Correlation between the stability of tRNA tertiary structure and the catalytic efficiency of a tRNA‐modifying enzyme, archaeal tRNA‐guanine transglycosylase

No abstract is available for this paper.

• Publication year

  2015

• Venue

  Genes to Cells

• Publication date

  2015-11-02

• Fields of study

  Biology, Medicine, Chemistry

• Identifiers
  DOI 10.1111/gtc.12317PMID 26663416
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Major reorientation of tRNA substrates defines specificity of dihydrouridine synthases

  2015cited by this paper
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  2014cited by this paper
• A simple system for expression of proteins containing 3-azidotyrosine at a pre-determined site in Escherichia coli.

  2013cited by this paper
• Purification and comparison of native and recombinant tRNA-guanine transglycosylases from Methanosarcina acetivorans.

  2013cited by this paper
• Construction of Escherichia coli K-12 Strain Deficient in relA and spoT Using the λ Red Site-Specific Recombinase System

  2012cited by this paper
• Diversity of archaeosine synthesis in crenarchaeota.

  2012cited by this paper
• MODOMICS: a database of RNA modification pathways—2013 update

  2012cited by this paper
• Molecular basis of dihydrouridine formation on tRNA

  2011cited by this paper
• Structural basis of tRNA agmatinylation essential for AUA codon decoding

  2011cited by this paper
• Discovery and Characterization of an Amidinotransferase Involved in the Modification of Archaeal tRNA*♦

  2010cited by this paper
• The crystal structure of unmodified tRNAPhe from Escherichia coli

  2010cited by this paper
• Mechanism of Dihydrouridine Synthase 2 from Yeast and the Importance of Modifications for Efficient tRNA Reduction*

  2009cited by this paper
• Structural basis for translational fidelity ensured by transfer RNA lysidine synthetase

  2009cited by this paper
• Optimization of the hybridization-based method for purification of thermostable tRNAs in the presence of tetraalkylammonium salts

  2009cited by this paper
• tRNAdb 2009: compilation of tRNA sequences and tRNA genes

  2008cited by this paper
• The PUA domain − a structural and functional overview

  2007cited by this paper
• Mg2+ binding and archaeosine modification stabilize the G15 C48 Levitt base pair in tRNAs.

  2007cited by this paper
• Mass spectrometric identification and characterization of RNA-modifying enzymes.

  2007influential reference
• tRNA's wobble decoding of the genome: 40 years of modification.

  2007cited by this paper
• Snapshots of tRNA sulphuration via an adenylated intermediate

  2006cited by this paper
• Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

  2006cited by this paper
• Alternative tertiary structure of tRNA for recognition by a posttranscriptional modification enzyme.

  2003cited by this paper
• Highly conserved modified nucleosides influence Mg2+-dependent tRNA folding.

  2002cited by this paper
• The non-Watson-Crick base pairs and their associated isostericity matrices.

  2002cited by this paper
• Crystal structure of archaeosine tRNA-guanine transglycosylase.

  2002influential reference
• Faculty Opinions recommendation of Cocrystal structure of a tRNA Psi55 pseudouridine synthase: nucleotide flipping by an RNA-modifying enzyme.

  2002cited by this paper
• Identification of the tRNA-Dihydrouridine Synthase Family*

  2002cited by this paper
• tRNA Recognition of tRNA-guanine Transglycosylase from a Hyperthermophilic Archaeon, Pyrococcus horikoshii *

  2001influential reference
• Improvement of reading frame maintenance is a common function for several tRNA modifications

  2001cited by this paper
• Mapping pseudouridines in RNA molecules.

  2001cited by this paper
• Hypermodification of tRNA in Thermophilic Archaea

  2000cited by this paper
• Novel Predicted RNA-Binding Domains Associated with the Translation Machinery

  1999cited by this paper
• Applicability of urea in the thermodynamic analysis of secondary and tertiary RNA folding.

  1999cited by this paper
• How translational accuracy influences reading frame maintenance

  1999cited by this paper
• Conformational transitions of an unmodified tRNA: implications for RNA folding.

  1998cited by this paper
• Identification of a gene involved in the generation of 4-thiouridine in tRNA.

  1998cited by this paper
• Mg2+ binding and structural stability of mature and in vitro synthesized unmodified Escherichia coli tRNAPhe.

  1998cited by this paper
• Slight sequence variations of a common fold explain the substrate specificities of tRNA‐guanine transglycosylases from the three kingdoms

  1997cited by this paper
• Biosynthesis of Archaeosine, a Novel Derivative of 7-Deazaguanosine Specific to Archaeal tRNA, Proceeds via a Pathway Involving Base Replacement on the tRNA Polynucleotide Chain*

  1997influential reference
• Synthesis and studies on the effect of 2-thiouridine and 4-thiouridine on sugar conformation and RNA duplex stability.

  1997cited by this paper
• The spoU gene of Escherichia coli, the fourth gene of the spoT operon, is essential for tRNA (Gm18) 2'-O-methyltransferase activity.

  1997cited by this paper
• Posttranscriptional modification of tRNA in psychrophilic bacteria

  1997cited by this paper
• Conformational flexibility in RNA: the role of dihydrouridine.

  1996cited by this paper
• Enzymatic formation of modified nucleosides in tRNA: dependence on tRNA architecture.

  1996cited by this paper
• Purification, cloning, and properties of the tRNA psi 55 synthase from Escherichia coli.

  1995cited by this paper
• Posttranscriptionally modified nucleosides in transfer RNA: their locations and frequencies.

  1995cited by this paper
• Stabilization of RNA stacking by pseudouridine.

  1995cited by this paper
• An unusual RNA tertiary interaction has a role for the specific aminoacylation of a transfer RNA.

  1993cited by this paper
• Conformational rigidity of specific pyrimidine residues in tRNA arises from posttranscriptional modifications that enhance steric interaction between the base and the 2'-hydroxyl group.

  1992cited by this paper
• Biochemical and physical characterization of an unmodified yeast phenylalanine transfer RNA transcribed in vitro.

  1988cited by this paper
• Purification, structure, and properties of Escherichia coli tRNA pseudouridine synthase I.

  1988cited by this paper
• Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates.

  1987cited by this paper
• Purification and thermal stability of several amino acid-specific tRNAs from an extreme thermophile, Thermus thermophilus HB8.

  1980cited by this paper
• CD and NMR studies on the conformational thermostability of 2-thioribothymidine found in the T psi C loop of thermophile tRNA.

  1979cited by this paper
• Crystal structure of yeast phenylalanine transfer RNA. I. Crystallographic refinement.

  1978cited by this paper
• Structlre of transfer RNA molecules containing the long variable loop.

  1976cited by this paper
• Crystallographic refinement of yeast phenylalanine transfer RNA at 2-5A resolution.

  1976cited by this paper
• The structural geometry of co-ordinated base changes in transfer RNA.

  1974cited by this paper
• Three-Dimensional Tertiary Structure of Yeast Phenylalanine Transfer RNA

  1974cited by this paper
• Structure of yeast phenylalanine tRNA at 3 Å resolution

  1974cited by this paper
• Isolation of mutants of Escherichia coli lac king 5-methyluracil in transfer ribonucleic acid or 1-methylguanine in ribosomal RNA.

  1970cited by this paper
• Detailed Molecular Model for Transfer Ribonucleic Acid

  1969cited by this paper
• The isolation and fractionation of soluble ribonucleic acid

  1962cited by this paper

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  2025cites this paper
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  2025cites this paper
• Transfer RNA Recognition Mechanism of Thermoplasma acidophilum Trm56, a SPOUT tRNA Methyltransferase that Possesses an Unusually Long C-terminal Region

  2025cites this paper
• ArcS from Thermococcus kodakarensis transfers L-lysine to preQ0 nucleoside derivatives as minimum substrate RNAs

  2024cites this paper
• Differential redox sensitivity of tRNA dihydrouridylation

  2024cites this paper
• RNA modifying enzymes shape tRNA biogenesis and function

  2024cites this paper
• RudS: bacterial desulfidase responsible for tRNA 4-thiouridine de-modification

  2024cites this paper
• Beyond the Anticodon: tRNA Core Modifications and Their Impact on Structure, Translation and Stress Adaptation

  2024influential citation
• Transfer RNA Modification Enzymes with a Thiouridine Synthetase, Methyltransferase and Pseudouridine Synthase (THUMP) Domain and the Nucleosides They Produce in tRNA

  2023cites this paper
• The diverse structural modes of tRNA binding and recognition

  2023influential citation
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  2023cites this paper
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  2022cites this paper
• Dihydrouridine in the Transcriptome: New Life for This Ancient RNA Chemical Modification.

  2022cites this paper
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  2022cites this paper
• Partially modified tRNAs for the study of tRNA maturation and function.

  2021cites this paper
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  2020cites this paper
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  2020cites this paper
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  2020cites this paper
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  2019cites this paper
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  2019cites this paper
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  2019cites this paper
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  2018cites this paper
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  2018cites this paper
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