De novo transcriptome assembly of fluorine accumulator tea plant Camellia sinensis with fluoride treatments

Tea plant (Camellia sinensis) is a typical fluoride (F) hyperaccumulator enriching most F in old leaves. There is association between the risk of fluorosis and excessive consumption of teas prepared using the old leaves. It is meaningful to develop methods for controlling F levels in tea leaves. We generated a comprehensive RNA-seq dataset from tea plants grown at various F levels for different durations by hydroponics, aiming at providing information on mechanism of F metabolism in tea plant. Besides raw reads of the RNA-seq dataset, we present assembled unigenes and aligned unigenes with annotations versus the Gene Ontology (GO) databases, Kyoto Encyclopaedia of Genes and Genomes (KEGG) databases, and Nonredundant (Nr) protein databases with low e-values. 69,488 unigenes were obtained in total, in which 40,894 were given Nr annotations. Design Type(s) transcription profiling by high throughput sequencing design • factorial design • sequence assembly objective Measurement Type(s) transcription profiling assay Technology Type(s) RNA sequencing Factor Type(s) Fluoride Measurement • experimental condition • Exposure Duration Sample Characteristic(s) Camellia sinensis • leaf Design Type(s) transcription profiling by high throughput sequencing design • factorial design • sequence assembly objective Measurement Type(s) transcription profiling assay Technology Type(s) RNA sequencing Factor Type(s) Fluoride Measurement • experimental condition • Exposure Duration Sample Characteristic(s) Camellia sinensis • leaf Machine-accessible metadata file describing the reported data (ISA-Tab format)

• Publication year

  2018

• Venue

  Scientific Data

• Publication date

  2018-09-25

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1038/sdata.2018.194PMID 30251991PMCID 6154286
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

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