Building an automated classification of DNA-binding protein domains

No abstract is available for this paper.

• Publication year

  2002

• Venue

  European Conference on Computational Biology

• Publication date

  2002-10-01

• Fields of study

  Biology, Medicine, Computer Science

• Identifiers
  DOI 10.1093/bioinformatics/18.suppl_2.s192PMID 12386003
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• PDP: protein domain parser

  2003cited by this paper
• Protein fold similarity estimated by a probabilistic approach based on Cα-Cα distance comparison

  2002cited by this paper
• The natural history of protein domains.

  2002cited by this paper
• Protein fold similarity estimated by a probabilistic approach based on C(alpha)-C(alpha) distance comparison.

  2002cited by this paper
• Classification of proteins based on the properties of the ligand‐binding site: The case of adenine‐binding proteins

  2002cited by this paper
• A fully automatic evolutionary classification of protein folds: Dali Domain Dictionary version 3

  2001influential reference
• 3Dee: a database of protein structural domains

  2001cited by this paper
• Identification of homology in protein structure classification

  2001influential reference
• Protein structural domains: Analysis of the 3Dee domains database

  2001cited by this paper
• Assigning genomic sequences to CATH

  2000influential reference
• An overview of the structures of protein-DNA complexes

  2000influential reference
• The Protein Data Bank

  2000cited by this paper
• Protein structure alignment by incremental combinatorial extension (CE) of the optimal path.

  1998cited by this paper
• SCOP: a structural classification of proteins database

  1998influential reference
• SSAP: sequential structure alignment program for protein structure comparison.

  1996cited by this paper
• SCOP: a structural classification of proteins database for the investigation of sequences and structures.

  1995influential reference
• Cluster Analysis for Applications

  1973cited by this paper
• Electronic Reprint Biological Crystallography the Protein Data Bank Biological Crystallography the Protein Data Bank

  year unknowncited by this paper
• in the protein

  year unknowncited by this paper

• Artificial Neural Network Models for Large-Scale Data

  2019cites this paper
• Data Mining for Social Network Analysis Using a CLIQUE Algorithm

  2019cites this paper
• The Today Tendency of Sentiment Classification

  2018cites this paper
• ENGLISH SENTIMENT CLASSIFICATION USING A GOWER-2 COEFFICIENT AND A GENETIC ALGORITHM WITH A FITNESS-PROPORTIONATE SELECTION IN A PARALLEL NETWORK ENVIRONMENT

  2018cites this paper
• THE BAG-OF-WORDS VECTORS AND A SOKAL & SNEATH-IV COEFFICIENT USED FOR A K-MEANS ALGORITHM OF ENGLISH SENTIMENT CLASSIFICATION IN A PARALLEL SYSTEM

  2018cites this paper
• A CO-TRAINING MODEL USING A FUZZY C-MEANS ALGORITHM, A K-MEANS ALGORITHM AND THE SENTIMENT LEXICONS - BASED MULTI-DIMENSIONAL VECTORS OF AN OTSUKA COEFFICIENT FOR ENGLISH SENTIMENT CLASSIFICATION

  2018cites this paper
• THE BINARY BITS AND THE SENTIMENT LEXICONS BASED ON AN YULE’S SIGMA COEFFICIENT USED FOR SENTIMENT CLASSIFICATION IN ENGLISH

  2018cites this paper
• English Sentiment Classification using Only the Sentiment Lexicons with a JOHNSON Coefficient in a Parallel Network Environment

  2018influential citation
• Characterization of facilitated diffusion of tumor suppressor p53 along DNA using single-molecule fluorescence imaging

  2017cites this paper
• An updated version of NPIDB includes new classifications of DNA–protein complexes and their families

  2015cites this paper
• Criteria for an updated Classification of Human transcription factor DNA-binding Domains

  2013cites this paper
• Re-visiting protein-centric two-tier classification of existing DNA-protein complexes

  2012cites this paper
• Identify DNA-binding proteins with optimal Chou's amino acid composition.

  2012cites this paper
• Bioinformatic analysis of the protein/DNA interface

  2011cites this paper
• A Clustering-Driven LDAP Framework

  2011cites this paper
• Genomic repertoires of DNA-binding transcription factors across the tree of life

  2010cites this paper
• Dissection, residue conservation, and structural classification of protein‐DNA interfaces

  2009cites this paper
• DNA-Prot: Identification of DNA Binding Proteins from Protein Sequence Information using Random Forest

  2009cites this paper
• A Structure-Based Clustering on LDAP Directory Information

  2008cites this paper
• Computational technique for improvement of the position-weight matrices for the DNA/protein binding sites

  2005cites this paper
• A structure-based method for identifying DNA-binding proteins and their sites of DNA-interaction

  2005cites this paper
• Benchmark probes for grid assessment

  2004cites this paper