Saccharomyces cerevisiae SFP1: at the crossroads of central metabolism and ribosome biogenesis.

No abstract is available for this paper.

• Publication year

  2008

• Venue

  Microbiology

• Publication date

  2008-06-01

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1099/mic.0.2008/017392-0PMID 18524923
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Creating gene set activity profiles with time-series expression data

  2008cited by this paper
• Revisiting the role of yeast Sfp1 in ribosome biogenesis and cell size control: a chemostat study.

  2008cited by this paper
• New insights into the Saccharomyces cerevisiae fermentation switch: Dynamic transcriptional response to anaerobicity and glucose-excess

  2008influential reference
• Hxk2 Regulates the Phosphorylation State of Mig1 and Therefore Its Nucleocytoplasmic Distribution*

  2007cited by this paper
• The fluxes through glycolytic enzymes in Saccharomyces cerevisiae are predominantly regulated at posttranscriptional levels

  2007cited by this paper
• Hmo1 Is Required for TOR-Dependent Regulation of Ribosomal Protein Gene Transcription

  2007cited by this paper
• Sch9 is a major target of TORC1 in Saccharomyces cerevisiae.

  2007cited by this paper
• Exploiting combinatorial cultivation conditions to infer transcriptional regulation

  2007cited by this paper
• A systems biology approach to study glucose repression in the yeast Saccharomyces cerevisiae

  2007cited by this paper
• Stb3 Binds to Ribosomal RNA Processing Element Motifs That Control Transcriptional Responses to Growth in Saccharomyces cerevisiae*

  2007cited by this paper
• Metabolome dynamic responses of Saccharomyces cerevisiae to simultaneous rapid perturbations in external electron acceptor and electron donor.

  2007cited by this paper
• EDGE: extraction and analysis of differential gene expression

  2006cited by this paper
• Nutrient regulates Tor1 nuclear localization and association with rDNA promoter

  2006cited by this paper
• The transcriptional activity of RNA polymerase I is a key determinant for the level of all ribosome components.

  2006cited by this paper
• Novel Unsupervised Feature Filtering of Biological Data

  2006cited by this paper
• Prolonged selection in aerobic, glucose-limited chemostat cultures of Saccharomyces cerevisiae causes a partial loss of glycolytic capacity.

  2005cited by this paper
• Glucose sensing through the Hxk2-dependent signalling pathway.

  2005cited by this paper
• Continuous culture--making a comeback?

  2005cited by this paper
• Tor and Cyclic AMP-Protein Kinase A: Two Parallel Pathways Regulating Expression of Genes Required for Cell Growth

  2005influential reference
• SFP1 is involved in cell size modulation in respiro‐fermentative growth conditions

  2005cited by this paper
• Sfp1 is a stress- and nutrient-sensitive regulator of ribosomal protein gene expression.

  2004cited by this paper
• A dynamic transcriptional network communicates growth potential to ribosome synthesis and critical cell size.

  2004cited by this paper
• TOR regulates ribosomal protein gene expression via PKA and the Forkhead transcription factor FHL1.

  2004cited by this paper
• Mini review

  2004cited by this paper
• Growth Rate and Cell Size Modulate the Synthesis of, and Requirement for, G1-Phase Cyclins at Start

  2004cited by this paper
• Transcriptional regulatory code of a eukaryotic genome

  2004cited by this paper
• At the crossroads of growth control; making ribosomal RNA.

  2004cited by this paper
• The Genome-wide Transcriptional Responses of Saccharomyces cerevisiae Grown on Glucose in Aerobic Chemostat Cultures Limited for Carbon, Nitrogen, Phosphorus, or Sulfur*

  2003cited by this paper
• Overproduction of Threonine Aldolase Circumvents the Biosynthetic Role of Pyruvate Decarboxylase in Glucose-Limited Chemostat Cultures of Saccharomyces cerevisiae

  2003cited by this paper
• Sfp1 Plays a Key Role in Yeast Ribosome Biogenesis

  2003influential reference
• Glucose Regulation of Saccharomyces cerevisiae Cell Cycle Genes

  2003cited by this paper
• Reproducibility of Oligonucleotide Microarray Transcriptome Analyses

  2002cited by this paper
• Elucidating TOR Signaling and Rapamycin Action: Lessons from Saccharomyces cerevisiae

  2002cited by this paper
• Glucose-sensing and -signalling mechanisms in yeast.

  2002cited by this paper
• The genomics of yeast responses to environmental stress and starvation

  2002cited by this paper
• Making ribosomes.

  2002cited by this paper
• Systematic Identification of Pathways That Couple Cell Growth and Division in Yeast

  2002influential reference
• The role of hexose transport and phosphorylation in cAMP signalling in the yeast Saccharomyces cerevisiae.

  2001cited by this paper
• RPN4 is a ligand, substrate, and transcriptional regulator of the 26S proteasome: A negative feedback circuit

  2001cited by this paper
• Regulation of the G1 to S transition by the ubiquitin pathway

  2001cited by this paper
• Stress-controlled transcription factors, stress-induced genes and stress tolerance in budding yeast.

  2000cited by this paper
• Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae.

  2000cited by this paper
• A web site for the computational analysis of yeast regulatory sequences

  2000cited by this paper
• Regulation of ribosome biogenesis by the rapamycin-sensitive TOR-signaling pathway in Saccharomyces cerevisiae.

  1999cited by this paper
• Feasting, fasting and fermenting. Glucose sensing in yeast and other cells.

  1999cited by this paper
• The economics of ribosome biosynthesis in yeast.

  1999cited by this paper
• Control by Nutrients of Growth and Cell Cycle Progression in Budding Yeast, Analyzed by Double-Tag Flow Cytometry

  1998cited by this paper
• Regulation of Cell Size by Glucose Is Exerted via Repression of the CLN1 Promoter

  1998cited by this paper
• Ribosomal protein gene transcription in Saccharomyces cerevisiae shows a biphasic response to nutritional changes.

  1996cited by this paper
• Cyclins and the Wiring of the Yeast Cell Cycle

  1996cited by this paper
• Two glucose transporters in Saccharomyces cerevisiae are glucose sensors that generate a signal for induction of gene expression.

  1996cited by this paper
• Regulation of carbon metabolism in chemostat cultures of Saccharomyces cerevisiae grown on mixtures of glucose and ethanol

  1995cited by this paper
• Protein kinase A mediates growth-regulated expression of yeast ribosomal protein genes by modulating RAP1 transcriptional activity

  1994cited by this paper
• Quantitative flow cytometry: analysis of protein distributions in budding yeast. A mini-review.

  1993cited by this paper
• Effect of benzoic acid on metabolic fluxes in yeasts: A continuous‐culture study on the regulation of respiration and alcoholic fermentation

  1992cited by this paper
• Competition for glucose between the yeasts Saccharomyces cerevisiae and Candida utilis

  1989cited by this paper
• Structural heterogeneity in populations of the budding yeast Saccharomyces cerevisiae

  1983cited by this paper
• Control of the yeast cell cycle by protein synthesis.

  1982cited by this paper
• Experiments with the Chemostat on spontaneous mutations of bacteria.

  1950cited by this paper
• Article number: 49

  year unknowncited by this paper

• Expression of CMK2 is controlled by the general stress-response transcriptional factor Msn2 through a single STRE site in budding yeast.

  2025cites this paper
• The calcineurin-responsive transcription factor Crz1 regulates the expression of CMK2 via a sole CDRE site in its promoter in budding yeast

  2025cites this paper
• Kcs1 and Vip1: The Key Enzymes behind Inositol Pyrophosphate Signaling in Saccharomyces cerevisiae

  2024cites this paper
• Transcription Factors Mcm1 and Sfp1 May Affect [PSI+] Prion Phenotype by Altering the Expression of the SUP35 Gene

  2024cites this paper
• Mimicked Mixing-Induced Heterogeneities of Industrial Bioreactors Stimulate Long-Lasting Adaption Programs in Ethanol-Producing Yeasts

  2023cites this paper
• Adaptive Response of Saccharomyces Hosts to Totiviridae L-A dsRNA Viruses Is Achieved through Intrinsically Balanced Action of Targeted Transcription Factors

  2022influential citation
• Performing in spite of starvation: How Saccharomyces cerevisiae maintains robust growth when facing famine zones in industrial bioreactors

  2022cites this paper
• Mining transcriptomic data to identify Saccharomyces cerevisiae signatures related to improved and repressed ethanol production under fermentation

  2021cites this paper
• The Yeast eIF2 Kinase Gcn2 Facilitates H2O2-Mediated Feedback Inhibition of Both Protein Synthesis and Endoplasmic Reticulum Oxidative Folding during Recombinant Protein Production

  2021influential citation
• The yeast eIF2 kinase Gcn2 facilitates H2O2-mediated feedback inhibition of both protein synthesis and ER oxidative folding during recombinant protein production

  2021cites this paper
• ChEC-seq: a robust method to identify protein-DNA interactions genome-wide

  2021cites this paper
• Modeling and analysis of the macronutrient signaling network in budding yeast

  2020cites this paper
• HMGB proteins involved in TOR signaling as general regulators of cell growth by controlling ribosome biogenesis

  2018cites this paper
• Homeostasis in a feed forward loop gene regulatory motif.

  2018cites this paper
• Adenylyl cyclase-associated protein 1: Structure, regulation, and participation in cellular processes

  2018cites this paper
• Disruption of the transcription factors Thi2p and Nrm1p alleviates the post-glucose effect on xylose utilization in Saccharomyces cerevisiae

  2018cites this paper
• Mechanisms Through Which Lithocholic Acid and Caloric Restriction Delay Yeast Chronological Aging

  2018cites this paper
• Condition-Specific Modeling of Biophysical Parameters Advances Inference of Regulatory Networks

  2018cites this paper
• Impact of Fungal MAPK Pathway Targets on the Cell Wall

  2018cites this paper
• Dynamic regulation of pathways by down-regulating competing enzymes

  2017cites this paper
• Investigation of platinum drug mode of action and resistance using yeast and human neuroblastoma cells as model systems

  2017cites this paper
• Explicit Modeling of RNA Stability Improves Large-Scale Inference of Transcription Regulation

  2017cites this paper
• Sfp1 and Rtg3 reciprocally modulate carbon source‐conditional stress adaptation in the pathogenic yeast Candida albicans

  2017cites this paper
• Caloric restriction extends yeast chronological lifespan via a mechanism linking cellular aging to cell cycle regulation, maintenance of a quiescent state, entry into a non-quiescent state and survival in the non-quiescent state

  2017cites this paper
• Investigating the effect of carbon source on rabies virus glycoprotein production in Pichia pastoris by a transcriptomic approach

  2017cites this paper
• TIF-IA: An oncogenic target of pre-ribosomal RNA synthesis.

  2016cites this paper
• SFP1‐mediated prion‐dependent lethality is caused by increased Sup35 aggregation and alleviated by Sis1

  2016cites this paper
• A Systems Approach for Dissecting Integrated Signaling Pathways: TORC1 and Ras/PKA Regulation of Glucose Induced Growth Control in S. cerevisiae

  2015cites this paper
• Sphingolipids regulate telomere clustering by affecting the transcription of genes involved in telomere homeostasis

  2015cites this paper
• Use of chemostat cultures mimicking different phases of wine fermentations as a tool for quantitative physiological analysis

  2014cites this paper
• Transcriptional response to the [ISP(+) ] prion of Saccharomyces cerevisiae differs from that induced by the deletion of its structural gene, SFP1.

  2014cites this paper
• Mapping functional transcription factor networks from gene expression data

  2013cites this paper
• Computational Approaches for Reconstruction of Time-Varying Biological Networks from Omics Data

  2013cites this paper
• The essence of yeast quiescence.

  2012cites this paper
• Cell size control in yeast.

  2012cites this paper
• Overexpression of Far1, a cyclin-dependent kinase inhibitor, induces a large transcriptional reprogramming in which RNA synthesis senses Far1 in a Sfp1-mediated way.

  2012cites this paper
• NETGEM: Network Embedded Temporal GEnerative Model for gene expression data

  2011cites this paper
• SUP35 expression is enhanced in yeast containing [ISP+], a prion form of the transcriptional regulator Sfp1

  2011cites this paper
• Are prions part of the dark matter of the cell?

  2011cites this paper
• Yeast cell size control: an interplay among ribosome biogenesis, protein synthesis and MAPK routes

  2011cites this paper
• The renaissance of continuous culture in the post-genomics age

  2010cites this paper
• The multifarious and dynamic regulation of the living cell

  2010cites this paper
• Stb3 Plays a Role in the Glucose-Induced Transition from Quiescence to Growth in Saccharomyces cerevisiae

  2010cites this paper
• TORC1 Signaling in Budding Yeast

  2010cites this paper
• Nutrient control of eukaryote cell growth: a systems biology study in yeast

  2010influential citation
• Distinguishing Direct versus Indirect Transcription Factor-DNA Interactions

  2010cites this paper
• Non-Mendelian determinant [ISP+] in yeast is a nuclear-residing prion form of the global transcriptional regulator Sfp1

  2010cites this paper
• Cross-species common regulatory network inference without requirement for prior gene affiliation

  2010cites this paper
• A metabolomic investigation of genes important in the production of flavour compounds by Saccharomyces cerevisiae

  2010cites this paper
• Increased expression of the oxidative pentose phosphate pathway and gluconeogenesis in anaerobically growing xylose-utilizing Saccharomyces cerevisiae

  2009cites this paper
• Dynamic response of Saccharomyces cerevisiae to fermentative growth conditions

  2009cites this paper
• Protein-dna binding: discovering motifs and distinguishing direct from indirect interactions

  2009cites this paper
• Molecular networks and system-level properties.

  2009cites this paper
• A Rab escort protein integrates the secretion system with TOR signaling and ribosome biogenesis.

  2009cites this paper
• interactions Distinguishing direct versus indirect transcription factor-DNA

  2009cites this paper
• Distinguishing direct versus indirect transcription factor-DNA interactions.

  2009cites this paper
• Bulyk interactions DNA − Distinguishing direct versus indirect transcription factor Material Supplemental

  2009cites this paper
• interactionsdirect versus indirect transcription factor-DNA

  2009cites this paper