Global genetic capacity for mixotrophy in marine picocyanobacteria

No abstract is available for this paper.

• Publication year

  2016

• Venue

  The ISME Journal

• Publication date

  2016-05-03

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1038/ismej.2016.64PMID 27137127PMCID PMC5148188
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Tritagonist as a new term for uncharacterised microorganisms in environmental systems

  2015cited by this paper
• Structure and function of the global ocean microbiome

  2015influential reference
• Ecology and evolution of lanthipeptides in marine picocyanobacteria

  2015cited by this paper
• Open science resources for the discovery and analysis of Tara Oceans data

  2015cited by this paper
• Subsurface chlorophyll maximum layers: enduring enigma or mystery solved?

  2015cited by this paper
• Co-occurring Synechococcus ecotypes occupy four major oceanic regimes defined by temperature, macronutrients and iron

  2015influential reference
• Photoheterotrophy of bacterioplankton is ubiquitous in the surface oligotrophic ocean

  2015cited by this paper
• Stimulation of growth by proteorhodopsin phototrophy involves regulation of central metabolic pathways in marine planktonic bacteria

  2014cited by this paper
• Abundance, size, and activity of aerobic anoxygenic phototrophic bacteria in coastal waters of the West Antarctic Peninsula

  2014cited by this paper
• Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities.

  2014influential reference
• Strong Genome-Wide Selection Early in the Evolution of Prochlorococcus Resulted in a Reduced Genome through the Loss of a Large Number of Small Effect Genes

  2014cited by this paper
• R: A language and environment for statistical computing.

  2014cited by this paper
• Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes

  2013cited by this paper
• From the Cover: Prochlorococcus can use the Pro1404 transporter to take up glucose at nanomolar concentrations in the Atlantic Ocean

  2013cited by this paper
• The Pacific Ocean Virome (POV): A Marine Viral Metagenomic Dataset and Associated Protein Clusters for Quantitative Viral Ecology

  2013cited by this paper
• Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus

  2013cited by this paper
• Comparable light stimulation of organic nutrient uptake by SAR11 and Prochlorococcus in the North Atlantic subtropical gyre

  2012cited by this paper
• Mixotrophic basis of Atlantic oligotrophic ecosystems

  2012cited by this paper
• Global abundance of microbial rhodopsins

  2012cited by this paper
• MOCAT: A Metagenomics Assembly and Gene Prediction Toolkit

  2012influential reference
• Diversity and Distribution of Marine Synechococcus: Multiple Gene Phylogenies for Consensus Classification and Development of qPCR Assays for Sensitive Measurement of Clades in the Ocean

  2012cited by this paper
• Opinion Article

  2011cited by this paper
• A Holistic Approach to Marine Eco-Systems Biology

  2011cited by this paper
• RAPSearch: a fast protein similarity search tool for short reads

  2011cited by this paper
• ProPortal: a resource for integrated systems biology of Prochlorococcus and its phage

  2011cited by this paper
• Novel lineages of Prochlorococcus and Synechococcus in the global oceans

  2011cited by this paper
• A Semi-Quantitative, Synteny-Based Method to Improve Functional Predictions for Hypothetical and Poorly Annotated Bacterial and Archaeal Genes

  2011cited by this paper
• Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans

  2010cited by this paper
• Novel lineages of Prochlorococcus thrive within the oxygen minimum zone of the eastern tropical South Pacific.

  2010cited by this paper
• Catalytic promiscuity in the biosynthesis of cyclic peptide secondary metabolites in planktonic marine cyanobacteria

  2010cited by this paper
• Prochlorococcus: advantages and limits of minimalism.

  2010cited by this paper
• Taxonomic resolution, ecotypes and the biogeography of Prochlorococcus.

  2009cited by this paper
• Photoheterotrophy in marine prokaryotes

  2009cited by this paper
• Diel rhythmicity in amino acid uptake by Prochlorococcus.

  2008cited by this paper
• Predicting protein linkages in bacteria: Which method is best depends on task

  2008cited by this paper
• Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria

  2008cited by this paper
• Major bacterial contribution to the ocean reservoir of detrital organic carbon and nitrogen

  2008cited by this paper
• Glucose Uptake and Its Effect on Gene Expression in Prochlorococcus

  2008influential reference
• Abundant proteorhodopsin genes in the North Atlantic Ocean.

  2007cited by this paper
• Patterns and Implications of Gene Gain and Loss in the Evolution of Prochlorococcus

  2007cited by this paper
• The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families

  2007cited by this paper
• The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific

  2007cited by this paper
• Distinct distribution pattern of abundance and diversity of aerobic anoxygenic phototrophic bacteria in the global ocean.

  2007cited by this paper
• Role of the GlgX protein in glycogen metabolism of the cyanobacterium, Synechococcus elongatus PCC 7942.

  2007cited by this paper
• Differential microbial uptake of dissolved amino acids and amino sugars in surface waters of the Atlantic Ocean

  2007cited by this paper
• Global phylogeography of marine Synechococcus and Prochlorococcus reveals a distinct partitioning of lineages among oceanic biomes.

  2007cited by this paper
• Light-Stimulated Bacterial Production and Amino Acid Assimilation by Cyanobacteria and Other Microbes in the North Atlantic Ocean

  2007cited by this paper
• Influence of light and temperature on Prochlorococcus ecotype distributions in the Atlantic Ocean

  2007cited by this paper
• Distribution of planktonic aerobic anoxygenic photoheterotrophic bacteria in the northwest Atlantic

  2006cited by this paper
• Dimethylsulfoniopropionate Uptake by Marine Phytoplankton

  2006cited by this paper
• Niche Partitioning Among Prochlorococcus Ecotypes Along Ocean-Scale Environmental Gradients

  2006influential reference
• RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

  2006influential reference
• Alanine Dehydrogenase Activity Is Required for Adequate Progression of Phycobilisome Degradation during Nitrogen Starvation in Synechococcus elongatus PCC 7942

  2006cited by this paper
• Phosphate acquisition genes in Prochlorococcus ecotypes: Evidence for genome-wide adaptation

  2006cited by this paper
• Measurement of Prochlorococcus ecotypes using real-time polymerase chain reaction reveals different abundances of genotypes with similar light physiologies.

  2006cited by this paper
• High resolution genetic diversity studies of marine Synechococcus isolates using rpoC1-based restriction fragment length polymorphism

  2006cited by this paper
• Prochlorococcus Ecotype Abundances in the North Atlantic Ocean As Revealed by an Improved Quantitative PCR Method

  2006cited by this paper
• Genetic diversity of marine Synechococcus and co-occurring cyanophage communities: evidence for viral control of phytoplankton.

  2005cited by this paper
• TCDB: the Transporter Classification Database for membrane transport protein analyses and information

  2005cited by this paper
• New Insights into Metabolic Properties of Marine Bacteria Encoding Proteorhodopsins

  2005influential reference
• Role of the Escherichia coli glgX Gene in Glycogen Metabolism

  2005cited by this paper
• Computational approaches for the analysis of gene neighbourhoods in prokaryotic genomes

  2004cited by this paper
• Depth related amino acid uptake by Prochlorococcus cyanobacteria in the Southern Atlantic tropical gyre.

  2004cited by this paper
• Light Dependence of [3H]Leucine Incorporation in the Oligotrophic North Pacific Ocean

  2004cited by this paper
• The evolutionary development of the protein complement of photosystem 2.

  2004cited by this paper
• Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation

  2003influential reference
• High Rate of Uptake of Organic Nitrogen Compounds by Prochlorococcus Cyanobacteria as a Key to Their Dominance in Oligotrophic Oceanic Waters

  2003cited by this paper
• Interactive analysis and visualization of geoscience data with ocean data view

  2002cited by this paper
• Contribution of Aerobic Photoheterotrophic Bacteria to the Carbon Cycle in the Ocean

  2001cited by this paper
• Proteorhodopsin phototrophy in the ocean

  2001cited by this paper
• Closely related Prochlorococcus genotypes show remarkably different depth distributions in two oceanic regions as revealed by in situ hybridization using 16S rRNA-targeted oligonucleotides.

  2001cited by this paper
• Predicting protein function by genomic context: quantitative evaluation and qualitative inferences.

  2000cited by this paper
• Bacterial rhodopsin: evidence for a new type of phototrophy in the sea.

  2000cited by this paper
• Mixotrophy in planktonic protists: an overview

  2000cited by this paper
• Utilization of dissolved protein and amino acids in the northern Sargasso Sea

  1999cited by this paper
• Photophysiology of the marine cyanobacterium Prochlorococcus: Ecotypic differences among cultured isolates

  1999cited by this paper
• Prochlorococcus, a Marine Photosynthetic Prokaryote of Global Significance

  1999cited by this paper
• Niche-partitioning of Prochlorococcus populations in a stratified water column in the eastern North Atlantic Ocean.

  1999cited by this paper
• Conservation of gene order: a fingerprint of proteins that physically interact.

  1998cited by this paper
• Niche adaptation in ocean cyanobacteria

  1998cited by this paper
• Reconstructing ancestral character states: a critical reappraisal.

  1998cited by this paper
• Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes

  1998cited by this paper
• A consumer's guide to phytoplankton primary productivity models

  1997cited by this paper
• Laboratorary Experiments with a Mixotrophic Chrysophyte and Obligately Phagotrophic and Photographic Competitors

  1996cited by this paper
• Utilization of substitutable carbon and phosphorus sources by the mixotrophic chrysophyte Ochromonas sp.

  1996cited by this paper
• Cyanobacterial community structure as seen from RNA polymerase gene sequence analysis

  1994influential reference
• Purification of glucose-inducible outer membrane protein OprB of Pseudomonas putida and reconstitution of glucose-specific pores

  1991cited by this paper
• Ecophysiological and Trophic Implications of Light-Stimulated Amino Acid Utilization in Marine Picoplankton

  1991cited by this paper
• Circadian Rhythm in Amino Acid Uptake by Synechococcus RF-1.

  1991cited by this paper
• Growth of Thiobacillus novellus on mixed substrates (mixotrophic growth)

  1980cited by this paper
• Protein D1 — A glucose-inducible, pore-forming protein from the outer membrane of Pseudomonas aeruginosa

  1980cited by this paper
• Cyanobacteria grown under photoautotrophic, photoheterotrophic, and heterotrophic regimes: Sugar metabolism and carbon dioxide fixation

  1978cited by this paper
• Purification and properties of a debranching enzyme from Escherichia coli.

  1976cited by this paper
• Photoheterotrophy and chemoheterotrophy among unicellular blue-green algae

  1972cited by this paper

• Transformation of plasmid DNA into Prochlorococcus via electroporation

  2025cites this paper
• Dynamics of cell death due to N and P starvation across intra-clade diversity in Prochlorococcus

  2025cites this paper
• Priming the pump: Enhanced nitrite release in response to a nitrate pulse by nitrogen-limited Prochlorococcus

  2025cites this paper
• Research progress on cyanobacteria-bacteria interactions and their effects on carbon and nitrogen cycles

  2025cites this paper
• Wide-ranging organic nitrogen diets of freshwater picocyanobacteria

  2025cites this paper
• Mixotrophy in cyanobacteria.

  2024cites this paper
• Mixed and membrane-separated culturing of synthetic cyanobacteria-yeast consortia reveals metabolic cross-talk mimicking natural cyanolichens

  2024cites this paper
• Heterotrophic bacteria trigger transcriptome remodelling in the photosynthetic picoeukaryote Micromonas commoda

  2024cites this paper
• Nitrogen and phosphorus uptake kinetics in cultures of two novel picoplankton groups responsible for a recent bloom event in a subtropical estuary (Indian River Lagoon, Florida)

  2024cites this paper
• Draft Genome Sequences of Synechococcus sp. strains CCAP1479/9, CCAP1479/10, CCAP1479/13, CCY0621, and CCY9618: Five Freshwater Syn/Pro Clade Picocyanobacteria

  2023cites this paper
• Tychonema sp. BBK16 Characterisation: Lifestyle, Phylogeny and Related Phages

  2023cites this paper
• High-throughput profiling of metabolic responses to exogenous nutrients in Synechocystis sp. PCC 6803

  2023cites this paper
• The Mixoplankton Database (MDB) Diversity of photophagotrophic plankton in form, function, and distribution across the global ocean

  2023cites this paper
• The Mixoplankton Database (MDB) Diversity of photophagotrophic plankton in form, function, and distribution across the global ocean

  2023cites this paper
• Increased cyanophage infection at the bottom of the euphotic zone, especially in the fall.

  2023cites this paper
• LATERAL ADVECTION OF PARTICULATE ORGANIC MATTER IN THE EASTERN INDIAN OCEAN

  2023cites this paper
• The Mixoplankton Database (MDB): Diversity of photo‐phago‐trophic plankton in form, function, and distribution across the global ocean

  2023cites this paper
• A year in the life of the Eastern Mediterranean: Monthly dynamics of phytoplankton and bacterioplankton in an ultra-oligotrophic sea

  2022cites this paper
• metaGOflow: a workflow for the analysis of marine Genomic Observatories shotgun metagenomics data

  2022cites this paper
• Production, homology modeling and mutagenesis studies on GlcH glucose transporter from Prochlorococcus sp. strain SS120.

  2022cites this paper
• Mixotrophy in depth

  2022cites this paper
• Single-cell measurements and modelling reveal substantial organic carbon acquisition by Prochlorococcus

  2022cites this paper
• Regulatory and metabolic adaptations in the nitrogen assimilation of marine picocyanobacteria.

  2022cites this paper
• Elucidating the picocyanobacteria salinity divide through ecogenomics of new freshwater isolates

  2022cites this paper
• Chitin utilization by marine picocyanobacteria and the evolution of a planktonic lifestyle

  2022cites this paper
• Variations of microbial communities and substrate regimes in the eastern Fram Strait between summer and fall.

  2022cites this paper
• Picocyanobacterial synechococcus in marine ecosystem: Insights from genetic diversity, global distribution, and potential function.

  2022cites this paper
• Novel functional insights into a modified sugar-binding protein from Synechococcus MITS9220

  2022cites this paper
• The “Dark Side” of Picocyanobacteria: Life as We Do Not Know It (Yet)

  2022cites this paper
• Deuterium in marine organic biomarkers: toward a new tool for quantifying aquatic mixotrophy

  2022cites this paper
• Compendium of 530 metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean

  2021cites this paper
• Seasonal dynamics of phytoplankton and bacterioplankton at the ultra-oligotrophic southeastern Mediterranean Sea

  2021cites this paper
• Metaproteomics reveals nutrient availability shaping distinct microbial community and metabolic niche in the nutrient-depleted and replete layers of an oligotrophic euphotic zone

  2021cites this paper
• Amino Acid Analog Induces Stress Response in Marine Synechococcus

  2021cites this paper
• Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities

  2021cites this paper
• Taxon-Specific Shifts in Bacterial and Archaeal Transcription of Dissolved Organic Matter Cycling Genes in a Stratified Fjord

  2021cites this paper
• Daily and Seasonal Rhythms of Marine Phages of Cyanobacteria

  2021cites this paper
• Influence of atmospheric deposition on biogeochemical cycles in an oligotrophic ocean system

  2021cites this paper
• Phototroph-heterotroph interactions during growth and long-term starvation across Prochlorococcus and Alteromonas diversity

  2021cites this paper
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  2021cites this paper
• Genomic and transcriptomic evidence for the diverse adaptations of subclusters 5.2 and 5.3 Synechococcus to mesoscale eddies.

  2021cites this paper
• Functional characterisation of substrate-binding proteins to address nutrient uptake in marine picocyanobacteria

  2021cites this paper
• Microbial Competition in the Subpolar Southern Ocean: An Fe–C Co-limitation Experiment

  2020cites this paper
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  2020cites this paper
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  2020cites this paper
• Coping with darkness: The adaptive response of marine picocyanobacteria to repeated light energy deprivation

  2020cites this paper
• Prochlorococcus Cells Rely on Microbial Interactions Rather than on Chlorotic Resting Stages To Survive Long-Term Nutrient Starvation

  2020cites this paper
• A new genomic taxonomy system for the Synechococcus collective.

  2020cites this paper
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  2020cites this paper
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  2020cites this paper
• Tara Oceans: towards global ocean ecosystems biology

  2020cites this paper
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  2020cites this paper
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  2020cites this paper
• Influence of atmospheric deposition on biogeochemical cycles in an oligotrophic ocean system

  2020cites this paper
• Phytoplankton in the Tara Ocean.

  2020influential citation
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  2020cites this paper
• Genomic, metabolic and phenotypic variability shapes ecological differentiation and intraspecies interactions of Alteromonas macleodii

  2020cites this paper
• Sampling bias misrepresents the biogeographical significance of constitutive mixotrophs across global oceans

  2019cites this paper
• Prokaryotic Population Dynamics and Viral Predation in a Marine Succession Experiment Using Metagenomics

  2019cites this paper
• Mixotrophic protists and a new paradigm for marine ecology: where does plankton research go now?

  2019cites this paper
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  2019cites this paper
• Glucose uptake in marine cyanobacteria: regulation, expression of the transporter and effects on the proteome and metabolome

  2019cites this paper
• Chemosynthetic symbiont with a drastically reduced genome serves as primary energy storage in the marine flatworm Paracatenula

  2019cites this paper
• Sulfur-Oxidizing Symbionts without Canonical Genes for Autotrophic CO2 Fixation

  2019cites this paper
• The mesopelagic anoxic Black Sea as an unexpected habitat for Synechococcus challenges our understanding of global “deep red fluorescence”

  2019cites this paper
• Genomic resolution of bacterial populations in saccharin and cyclamate degradation.

  2019cites this paper
• Fine metagenomic profile of the Mediterranean stratified and mixed water columns revealed by assembly and recruitment

  2018cites this paper
• Outer Membrane Iron Uptake Pathways in the Model Cyanobacterium Synechocystis sp. Strain PCC 6803

  2018cites this paper
• Mixotrophic metabolism by natural communities of unicellular cyanobacteria in the western tropical South Pacific Ocean

  2018cites this paper
• Single cell genomes of Prochlorococcus, Synechococcus, and sympatric microbes from diverse marine environments

  2018cites this paper
• Arctic marine microbial ecology during the Svalbard Polar Night

  2018cites this paper
• Differential expression of the glucose transporter gene glcH in response to glucose and light in marine picocyanobacteria

  2018cites this paper
• Microbial carbon dioxide fixation: new tricks for an old game.

  2018cites this paper
• Dissolved Organic Matter Influences N2 Fixation in the New Caledonian Lagoon (Western Tropical South Pacific)

  2018cites this paper
• Heterotroph Interactions Alter Prochlorococcus Transcriptome Dynamics during Extended Periods of Darkness

  2018cites this paper
• Evolution and physiology of the Paracatenula symbiosis

  2018cites this paper
• Dissolved Organic Nitrogen Production and Consumption in Eastern Tropical South Pacific Surface Waters

  2018cites this paper
• Glucose Uptake in Prochlorococcus: Diversity of Kinetics and Effects on the Metabolism

  2017influential citation
• A penalty on photosynthetic growth in fluctuating light

  2017cites this paper
• Multiplexed Microfluidics for the Study of Photosynthetic Microorganisms

  2017cites this paper
• Winter mixing impacts gene expression in marine microbial populations in the Gulf of Aqaba

  2017cites this paper
• Pigment diversity in marine Synechococcus sp. : molecular basis, evolution and ecological role

  2017cites this paper
• Nutrient recycling facilitates long-term stability of marine microbial phototroph-heterotroph interactions

  2017cites this paper
• Synechococcus in the Atlantic Gateway to the Arctic Ocean

  2016cites this paper
• mdRNA-Seq analysis of marine microbial communities from the northern Red Sea

  2016cites this paper