Annual patterns of presence and activity of marine bacteria monitored by 16S rDNA–16S rRNA fingerprints in the coastal NW Mediterranean Sea

No abstract is available for this paper.

• Publication year

  2009

• Venue

  Aquatic Microbial Ecology

• Publication date

  2009-02-18

• Fields of study

  Biology, Environmental Science

• Identifiers
  DOI 10.3354/AME01264
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

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  2004cited by this paper
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  2000cited by this paper
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  2000cited by this paper
• Seasonal and Spatial Variability of Bacterial and Archaeal Assemblages in the Coastal Waters near Anvers Island, Antarctica

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  1998cited by this paper
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  1998cited by this paper
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  1998cited by this paper
• 16S rDNA sequence diversity of a culture-accessible part of an anaerobic digestor bacterial community.

  1998cited by this paper
• Nonradioactive method to study genetic profiles of natural bacterial communities by PCR-single-strand-conformation polymorphism

  1996cited by this paper
• Single-cell RNA content of natural marine planktonic bacteria measured by hybridization with multiple 16S rRNA-targeted fluorescent probes

  1994cited by this paper
• Comparison of Nucleic Acid Hybridization and Fluorometry for Measurement of the Relationship between RNA/DNA Ratio and Growth Rate in a Marine Bacterium

  1993cited by this paper
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  1992cited by this paper
• Genetic diversity in Sargasso Sea bacterioplankton

  1990cited by this paper
• Phylogenetic stains: ribosomal RNA-based probes for the identification of single cells.

  1989cited by this paper
• Effect of Growth Rate and Starvation-Survival on Cellular DNA, RNA, and Protein of a Psychrophilic Marine Bacterium

  1989cited by this paper
• CANOCO - a FORTRAN program for canonical community ordination by [partial] [etrended] [canonical] correspondence analysis, principal components analysis and redundancy analysis (version 2.1)

  1988cited by this paper
• Estimating the population size for capture-recapture data with unequal catchability.

  1987influential reference
• Role of ribosome degradation in the death of starved Escherichia coli cells

  1986cited by this paper
• The Ecological Role of Water-Column Microbes in the Sea*

  1983cited by this paper
• Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli.

  1981cited by this paper

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  2018cites this paper
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  2017cites this paper
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  2015cites this paper
• Temporal dynamics of active Archaea in oxygen-depleted zones of two deep lakes.

  2015cites this paper
• Understanding harmful algae in stratified systems: Review of progress and future directions

  2014cites this paper
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  2014cites this paper
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  2014cites this paper
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  2014cites this paper
• Gene Mining for Environmental Studies and Applications: Examples from Marine Organisms

  2014cites this paper
• Effects of temperature and fertilization on the structure of total versus active bacterial communities from sub-Antarctic seawater exposed to crude oil and diesel fuel

  2013cites this paper
• Seasonal dynamics of bacterial community structure and composition in cold and hot drinking water derived from surface water reservoirs.

  2013cites this paper
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  2013cites this paper
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  2013cites this paper
• M Macroinvertebrate Ecotoxicity Testing ( MET )

  2013cites this paper
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  2012cites this paper
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  2011cites this paper
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  2010cites this paper
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  2010influential citation
• Short‐term changes in the composition of active marine bacterial assemblages in response to diesel oil pollution

  2010cites this paper
• Genome characteristics of a generalist marine bacterial lineage

  2010cites this paper
• From Structure to Function: the Ecology of Host-Associated Microbial Communities

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  year unknowncites this paper