Three-stage continuous culture system with a self-generated anaerobia to study the regionalized metabolism of the human gut microbiota.

No abstract is available for this paper.

• Publication year

  2014

• Venue

  Journal of Microbiological Methods

• Publication date

  Unknown publication date

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1016/j.mimet.2013.11.015PMID 24333608
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Evaluation of microbial community reproducibility, stability and composition in a human distal gut chemostat model.

  2013cited by this paper
• The Human Gut Chip “HuGChip”, an Explorative Phylogenetic Microarray for Determining Gut Microbiome Diversity at Family Level

  2013cited by this paper
• Techniques used to characterize the gut microbiota: a guide for the clinician

  2012cited by this paper
• Advances and perspectives in in vitro human gut fermentation modeling.

  2012cited by this paper
• In vitro fermentation of potential prebiotic flours from natural sources: impact on the human colonic microbiota and metabolome.

  2012cited by this paper
• In Vitro Culture Conditions for Maintaining a Complex Population of Human Gastrointestinal Tract Microbiota

  2011cited by this paper
• Bacterial biogeography of the human digestive tract

  2011cited by this paper
• Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice

  2011cited by this paper
• In vitro maintenance of a human proximal colon microbiota using the continuous fermentation system P-ECSIM

  2011influential reference
• Incorporating a mucosal environment in a dynamic gut model results in a more representative colonization by lactobacilli

  2011cited by this paper
• The ECSIM Concept (Environmental Control System for Intestinal Microbiota) and Its Derivative Versions to Help Better Understand Human Gut Biology

  2011cited by this paper
• Enterotypes of the human gut microbiome

  2011cited by this paper
• Microbial Community Development in a Dynamic Gut Model Is Reproducible, Colon Region Specific, and Selective for Bacteroidetes and Clostridium Cluster IX

  2010cited by this paper
• Evaluating the microbial diversity of an in vitro model of the human large intestine by phylogenetic microarray analysis.

  2010cited by this paper
• A human gut microbial gene catalogue established by metagenomic sequencing

  2010cited by this paper
• Mechanisms of microbial hydrogen disposal in the human colon and implications for health and disease.

  2010cited by this paper
• Towards the human intestinal microbiota phylogenetic core.

  2009cited by this paper
• Tools for stools: the challenge of assessing human intestinal microbiota using molecular diagnostics

  2009cited by this paper
• The Effect of Diet on the Human Gut Microbiome: A Metagenomic Analysis in Humanized Gnotobiotic Mice

  2009cited by this paper
• Metabolism of the lignan macromolecule into enterolignans in the gastrointestinal lumen as determined in the simulator of the human intestinal microbial ecosystem.

  2008cited by this paper
• XCMS2: processing tandem mass spectrometry data for metabolite identification and structural characterization.

  2008cited by this paper
• HMDB: the Human Metabolome Database

  2007cited by this paper
• Models for intestinal fermentation: association between food components, delivery systems, bioavailability and functional interactions in the gut.

  2007cited by this paper
• A humanized gnotobiotic mouse model of host-archaeal-bacterial mutualism.

  2006cited by this paper
• XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification.

  2006cited by this paper
• The gut flora as a forgotten organ

  2006cited by this paper
• Diversity of the Human Intestinal Microbial Flora

  2005influential reference
• Colonization of Mucin by Human Intestinal Bacteria and Establishment of Biofilm Communities in a Two-Stage Continuous Culture System

  2005cited by this paper
• A novel galactooligosaccharide mixture increases the bifidobacterial population numbers in a continuous in vitro fermentation system and in the proximal colonic contents of pigs in vivo.

  2005cited by this paper
• Improved extraction of PCR-quality community DNA from digesta and fecal samples.

  2004influential reference
• Comparison of Different Primer Sets for Use in Automated Ribosomal Intergenic Spacer Analysis of Complex Bacterial Communities

  2004cited by this paper
• Protectants used in the cryopreservation of microorganisms.

  2003cited by this paper
• PAST: PALEONTOLOGICAL STATISTICAL SOFTWARE PACKAGE FOR EDUCATION AND DATA ANALYSIS

  2001cited by this paper
• KEGG: Kyoto Encyclopedia of Genes and Genomes

  2000cited by this paper
• A computer-controlled system to simulate conditions of the large intestine with peristaltic mixing, water absorption and absorption of fermentation products

  1999cited by this paper
• Polysaccharide degradation by human intestinal bacteria during growth under multi-substrate limiting conditions in a three-stage continuous culture system

  1998influential reference
• Validation of a Three-Stage Compound Continuous Culture System for Investigating the Effect of Retention Time on the Ecology and Metabolism of Bacteria in the Human Colon

  1998influential reference
• Development of a 5-step multi-chamber reactor as a simulation of the human intestinal microbial ecosystem

  1993influential reference
• Comparison of fermentation reactions in different regions of the human colon.

  1992cited by this paper
• Detection of Bifidobacteria by Using Propionic Acid as a Selective Agent

  1991cited by this paper
• Continuous culture of human faecal bacteria as an in vitro model for the colonic microflora.

  1990cited by this paper
• Studies on mixed populations of human intestinal bacteria grown in single-stage and multistage continuous culture systems

  1989influential reference
• Use of a three-stage continuous culture system to study the effect of mucin on dissimilatory sulfate reduction and methanogenesis by mixed populations of human gut bacteria

  1988cited by this paper
• [The fecal flora in man. I. Composition of the fecal flora of various age groups].

  1973cited by this paper

• Cultivation of the Oligo-Mouse-Microbiota OMM12 in the peristaltic mixed tubular bioreactor PETR

  2025cites this paper
• Non-stochastic reassembly of a metabolically cohesive gut consortium shaped by N-acetyl-lactosamine-enriched fibers

  2024cites this paper
• Cellular and Microbial In Vitro Modelling of Gastrointestinal Cancer

  2024influential citation
• Effect of Operational Parameters on the Cultivation of the Gut Microbiome in Continuous Bioreactors Inoculated with Feces: A Systematic Review

  2023cites this paper
• Organic vegetable juice supplement alleviates hyperlipidemia in diet‐induced obese mice and modulates microbial community in continuous colon simulation system

  2023cites this paper
• PETR: A novel peristaltic mixed tubular bioreactor simulating human colonic conditions

  2023influential citation
• An in vitro platform for study of the human gut microbiome under an oxygen gradient

  2023cites this paper
• Isolation and characterization of a novel human intestinal Enterococcus faecium FUA027 capable of producing urolithin A from ellagic acid

  2022cites this paper
• Colonic drug delivery: Formulating the next generation of colon-targeted therapeutics.

  2022cites this paper
• Competition for nutrients increases invasion resistance during assembly of microbial communities

  2022cites this paper
• Beyond mitochondria: alternative energy-producing pathways from all strata of life.

  2021cites this paper
• Technological tools and strategies for culturing human gut microbiota in engineered in vitro models

  2021cites this paper
• Omic Approaches Coupled to Gastrointestinal Dynamic Modelling to Assess Food Bioactivity

  2021cites this paper
• Metabolic analysis of regionally distinct gut microbial communities using an in vitro platform.

  2020cites this paper
• Towards understanding the modulation potential of dietary fibers on intestinal microbiota using human and a novel murine intestinal fermentation model

  2019cites this paper
• Stepwise Development of an in vitro Continuous Fermentation Model for the Murine Caecal Microbiota

  2019cites this paper
• Laboratory Simulators of the Colon Microbiome

  2019cites this paper
• Using bioreactors to study the effects of drugs on the human microbiota.

  2018cites this paper
• Establishing a mucosal gut microbial community in vitro using an artificial simulator

  2018cites this paper
• Effects of fermented milk treatment on microbial population and metabolomic outcomes in a three-stage semi-continuous culture system.

  2018cites this paper
• Archaebiotics: Archaea as Pharmabiotics for Treating Chronic Disease in Humans?

  2017cites this paper
• Colonic Transit Time Is a Driven Force of the Gut Microbiota Composition and Metabolism: In Vitro Evidence

  2017influential citation
• Environmental Pollutant Benzo[a]Pyrene Impacts the Volatile Metabolome and Transcriptome of the Human Gut Microbiota

  2017cites this paper
• Functional amplification and preservation of human gut microbiota

  2017cites this paper
• In vitro rumen fermentation of soluble and non-soluble polymeric carbohydrates in relation to ruminal acidosis

  2017cites this paper
• Product accumulation and its control during microbial carbohydrate Fermentations by Rumen- and other mixed microbial consortia

  2017cites this paper
• Lotus Seed Resistant Starch Regulates Gut Microbiota and Increases Short-Chain Fatty Acids Production and Mineral Absorption in Mice.

  2017cites this paper
• Modeling Effects of Diet on Human Gut Microbiota

  2016cites this paper
• Preparation of a standardised faecal slurry for ex-vivo microbiota studies which reduces inter-individual donor bias.

  2016cites this paper
• Engineering Human Microbiota: Influencing Cellular and Community Dynamics for Therapeutic Applications.

  2016cites this paper
• Development of human colonic microbiota in the computer-controlled dynamic SIMulator of the GastroIntestinal tract SIMGI

  2015cites this paper
• Impact de traitements antibiotiques sur la flore digestive du porcelet : Etude in vivo et développement d'une approche en système de fermentation in vitro

  2015influential citation
• Insights on the human microbiome and its xenobiotic metabolism: what is known about its effects on human physiology?

  2015cites this paper
• Survie et pathogénicité des EHEC dans l'environnement digestif : Interactions avec le microbiote et l'épithélium intestinal. : Influence de l'administration de levures probiotiques.

  2015cites this paper
• THÈSE / UNIVERSITÉ DE RENNES 1 sous le sceau de l'Université Européenne de Bretagne pour le grade de DOCTEUR DE L'UNIVERSITÉ DE RENNES 1 Mention : Biologie et Sciences de la Santé

  2015cites this paper
• Pathways and functions of gut microbiota metabolism impacting host physiology.

  2015cites this paper
• Molecular methods for studying methanogens of the human gastrointestinal tract: current status and future directions

  2015cites this paper
• Archaea and the human gut: new beginning of an old story.

  2014cites this paper
• Etude en systèmes digestifs artificiels de la survie et de la pathogénicité des Escherichia Coli entérohémorragiques (EHEC). Influence de la matrice alimentaire et de l'administration de souches probiotiques.

  2014cites this paper
• Adaptation of a Single-Stage Chemostat System to Model Functional Aspects of the Human Distal Gut Microbiota

  2014cites this paper