Using estimative reaction free energy to predict splice sites and their flanking competitors.

No abstract is available for this paper.

• Publication year

  2008

• Venue

  Gene

• Publication date

  2008-11-15

• Fields of study

  Biology, Medicine, Computer Science

• Identifiers
  DOI 10.1016/j.gene.2008.07.038PMID 18761064
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• One parameter to describe the mechanism of splice sites competition.

  2008influential reference
• BMC Bioinformatics BioMed Central Review

  2007cited by this paper
• Precise physical models of protein–DNA interaction from high-throughput data

  2007cited by this paper
• Accurate splice site prediction using support vector machines

  2007cited by this paper
• Using the principle of entropy maximization to infer genetic interaction networks from gene expression patterns

  2006cited by this paper
• Identification of Alternative 5 Splice Sites Based on the Mechanism of Splice Site Competition

  2006influential reference
• An approach of encoding for prediction of splice sites using SVM.

  2006cited by this paper
• Characterization and prediction of alternative splice sites.

  2006influential reference
• SpliceMachine: predicting splice sites from high-dimensional local context representations

  2005cited by this paper
• Human-mouse comparative analysis reveals that branch-site plasticity contributes to splicing regulation.

  2005cited by this paper
• Gene and alternative splicing annotation with AIR.

  2005cited by this paper
• ASD: a bioinformatics resource on alternative splicing

  2005cited by this paper
• ASD: the Alternative Splicing Database

  2004cited by this paper
• Genome-Wide Survey of Human Alternative Pre-mRNA Splicing with Exon Junction Microarrays

  2003cited by this paper
• Prediction and statistical analysis of alternatively spliced exons.

  2003cited by this paper
• Maximum Entropy Modeling of Short Sequence Motifs with Applications to RNA Splicing Signals

  2003cited by this paper
• Alternative splicing and proteome diversity in plants: the tip of the iceberg has just emerged.

  2003cited by this paper
• Splice site prediction with quadratic discriminant analysis using diversity measure.

  2003cited by this paper
• Defining a 5' splice site by functional selection in the presence and absence of U1 snRNA 5' end.

  2002cited by this paper
• A genomic view of alternative splicing

  2002cited by this paper
• Additivity in protein-DNA interactions: how good an approximation is it?

  2002cited by this paper
• Alternative splicing: increasing diversity in the proteomic world.

  2001cited by this paper
• A computational analysis of sequence features involved in recognition of short introns

  2001cited by this paper
• Genome-wide detection of alternative splicing in expressed sequences of human genes

  2001cited by this paper
• Alternative pre-mRNA splicing: the logic of combinatorial control.

  2000cited by this paper
• Analysis of canonical and non-canonical splice sites in mammalian genomes.

  2000cited by this paper
• An RNA switch at the 5' splice site requires ATP and the DEAD box protein Prp28p.

  1999cited by this paper
• Alternative splicing of pre-mRNA: developmental consequences and mechanisms of regulation.

  1998cited by this paper
• The maximum information principle and the evolution of nucleotide sequences.

  1995cited by this paper
• Selection of DNA binding sites by regulatory proteins. II. The binding specificity of cyclic AMP receptor protein to recognition sites.

  1988cited by this paper
• Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters.

  1987cited by this paper
• Information Theory and Statistical Mechanics

  1957cited by this paper

• Identification of TATA and TATA-less promoters in plant genomes by integrating diversity measure, GC-Skew and DNA geometric flexibility.

  2011cites this paper
• Increment of diversity with quadratic discriminant analysis – an efficient tool for sequence pattern recognition in bioinformatics

  2010cites this paper
• On the Law of Directionality of Genome Evolution

  2008cites this paper