Novel biotic stress responsive candidate gene based SSR (cgSSR) markers from rice

No abstract is available for this paper.

• Publication year

  2019

• Venue

  Euphytica

• Publication date

  2019-02-01

• Fields of study

  Agricultural and Food Sciences, Biology

• Identifiers
  DOI 10.1007/s10681-018-2329-6
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

• Oryza officinalis Complex

  2018cited by this paper
• Wild Relatives of Rice: A Valuable Genetic Resource for Genomics and Breeding Research

  2018cited by this paper
• Utilization of Cultivated and Wild Gene Pools of Rice for Resistance to Biotic Stresses

  2018cited by this paper
• agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update

  2017cited by this paper
• Development of SSR Markers and Assessment of Genetic Diversity in Medicinal Chrysanthemum morifolium Cultivars

  2016cited by this paper
• Development of genic SSR marker resource from RNA-Seq data in Dendrocalamus latiflorus

  2016cited by this paper
• Additional file 8: of Indica rice genome assembly, annotation and mining of blast disease resistance genes

  2016influential reference
• Tissue-specific expression of Arabidopsis NPR1 gene in rice for sheath blight resistance without compromising phenotypic cost.

  2016cited by this paper
• Moderate Genetic Diversity and Genetic Differentiation in the Relict Tree Liquidambar formosana Hance Revealed by Genic Simple Sequence Repeat Markers

  2016cited by this paper
• Development and validation of cross-transferable and polymorphic DNA markers for detecting alien genome introgression in Oryza sativa from Oryza brachyantha

  2016cited by this paper
• Development and Characterization of Genic SSR Markers from Indian Mulberry Transcriptome and Their Transferability to Related Species of Moraceae

  2016cited by this paper
• Association between QTLs and morphological traits toward sheath blight resistance in rice (Oryza sativa L.)

  2016cited by this paper
• Spatial Pattern of Natural Spread of Rice False Smut ( Ustilaginoidea virens ) Disease in Fields

  2015cited by this paper
• Differential expression profiling of the early response to Ustilaginoidea virens between false smut resistant and susceptible rice varieties

  2015cited by this paper
• Development and characterization of genic-SSR markers from different Asia lotus (Nelumbo nucifera) types by RNA-seq.

  2015cited by this paper
• Identification and analysis of novel salt responsive candidate gene based SSRs (cgSSRs) from rice (Oryza sativa L.)

  2015cited by this paper
• Expressed Sequence Tag-Simple Sequence Repeat (EST-SSR) Marker Resources for Diversity Analysis of Mango (Mangifera indica L.)

  2014cited by this paper
• Development of highly polymorphic simple sequence repeat markers using genome-wide microsatellite variant analysis in Foxtail millet [Setaria italica (L.) P. Beauv.]

  2014cited by this paper
• Development of genic SSR markers from transcriptome sequencing of pear buds

  2014cited by this paper
• Rice oxalate oxidase gene driven by green tissue-specific promoter increases tolerance to sheath blight pathogen (Rhizoctonia solani) in transgenic rice.

  2013cited by this paper
• Development and characterization of genic SSR markers for mungbean (Vigna radiata (L.) Wilczek)

  2013cited by this paper
• Yield Trends Are Insufficient to Double Global Crop Production by 2050

  2013cited by this paper
• Identification of candidate gene–based SSR markers for lysine and tryptophan metabolic pathways in maize (Zea mays)

  2012cited by this paper
• Allelic Analysis of Sheath Blight Resistance with Association Mapping in Rice

  2012cited by this paper
• Major Cereal Grains Production and Use around the World

  2011cited by this paper
• Current Status of Brown Planthopper (BPH) Resistance and Genetics

  2010cited by this paper
• The Future of Rice Genomics: Sequencing the Collective Oryza Genome

  2010cited by this paper
• Highly variable SSR markers suitable for rice genotyping using agarose gels

  2009cited by this paper
• Genic non-coding microsatellites in the rice genome: characterization, marker design and use in assessing genetic and evolutionary relationships among domesticated groups

  2009cited by this paper
• Identification of candidate gene-based markers (SNPs and SSRs) in the zinc and iron transporter sequences of maize (Zea mays L.)

  2008cited by this paper
• GGT 2.0: versatile software for visualization and analysis of genetic data.

  2008influential reference
• Unigene derived microsatellite markers for the cereal genomes

  2006cited by this paper
• Crop losses to pests

  2005influential reference
• Cross-species Transferability of Rice Microsatellites in its Wild Relatives and the Potential for Conservation Genetic Studies

  2005cited by this paper
• Development and mapping of EST-derived simple sequence repeat markers for hexaploid wheat.

  2004cited by this paper
• A comprehensive survey of human Y-chromosomal microsatellites.

  2004cited by this paper
• Microsatellites within genes: structure, function, and evolution.

  2004cited by this paper
• Identification of five new blast resistance genes in the highly blast-resistant rice variety IR64 using a QTL mapping strategy

  2003cited by this paper
• Transferability of microsatellite and sequence tagged site markers in Oryza species.

  2003cited by this paper
• In silico analysis on frequency and distribution of microsatellites in ESTs of some cereal species.

  2002influential reference
• Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat

  2002cited by this paper
• Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential.

  2001cited by this paper
• Diversity of microsatellites derived from genomic libraries and GenBank sequences in rice (Oryza sativa L.)

  2000cited by this paper
• Selection against frameshift mutations limits microsatellite expansion in coding DNA.

  2000cited by this paper
• False smut: a threat to rice growers in Assam.

  1992cited by this paper
• The neighbor-joining method: a new method for reconstructing phylogenetic trees.

  1987cited by this paper
• Construction of a genetic linkage map in man using restriction fragment length polymorphisms.

  1980cited by this paper

• Multi-dimensional trait improvement of two unique semi-dwarf Indica rice varieties through combinatorial introgression of five bacterial blight resistance genes and sd1 alleles

  2026cites this paper
• A robust 1K-core marker set for wild germplasm management and targeted pre-breeding of rice: development and applications

  2026cites this paper
• Genetic diversity and phylogenetic relationships among Piper species using gene-based cross-transferable simple sequence repeat (SSR) markers

  2025influential citation
• Genome-wide association mapping for rapid and uniform germination traits associated with direct-seeded adaptation in rice

  2025cites this paper
• Comparative analysis of simple sequence repeats and synteny across ten Oryza species: Implications for stress response and genetic diversity

  2025cites this paper
• Discovering New QTNs and Candidate Genes Associated with Rice-Grain-Related Traits within a Collection of Northeast Core Set and Rice Landraces

  2024cites this paper
• Streamlining of Simple Sequence Repeat Data Mining Methodologies and Pipelines for Crop Scanning

  2024cites this paper
• Comparative Field Evaluation and Transcriptome Analysis Reveals that Chromosome Doubling Enhances Sheath Blight Resistance in Rice

  2024cites this paper
• cgSSR marker based trait associations for Sitotroga cerealella (Olivier) resistance in stored paddy rice

  2024cites this paper
• Durable Resistance of Rice to Major and Emerging Diseases: Present Status

  2023cites this paper
• Genetic Characterization of the Partial Disease Resistance of Rice to Bacterial Panicle Blight and Sheath Blight by Combined QTL Linkage and QTL-seq Analyses

  2023cites this paper
• Gene based markers improve precision of genome-wide association studies and accuracy of genomic predictions in rice breeding

  2023cites this paper
• Time-Course Transcriptome Analysis Identifies Rewiring patterns of Transcriptional Regulatory Networks in Rice under Rhizoctonia solani infection.

  2022cites this paper
• Understanding natural genetic variation for grain phytic acid content and functional marker development for phytic acid-related genes in rice

  2022cites this paper
• Genetic Dissection of Grain Size Traits Through Genome-Wide Association Study Based on Genic Markers in Rice

  2022cites this paper
• Unravelling genetic architecture and development of core set from elite rice lines using yield-related candidate gene markers

  2022cites this paper
• Genome-wide association analysis for plant type characters and yield using cgSSR markers in rice (Oryza sativa L.)

  2022cites this paper
• The core set of sequence-tagged microsatellite sites markers between halophytic wild rice Oryza coarctata and Oryza sativa complex

  2021cites this paper
• Comparative transcriptome profiling reveals the basis of differential sheath blight disease response in tolerant and susceptible rice genotypes

  2021cites this paper
• TeaMiD: a comprehensive database of simple sequence repeat markers of tea

  2020cites this paper
• Stable quantitative trait locus (QTL) for sheath blight resistance from rice cultivar CR 1014

  2020cites this paper
• Genetic Engineering and Genome Editing Strategies to Enhance Diseases Resistance of Rice Plants: A Review of Progress and Future Prospects

  2020cites this paper
• Characteristics of Microsatellites Mined from Transcriptome Data and the Development of Novel Markers in Paeonia lactiflora

  2020cites this paper
• Understanding sheath blight resistance in rice: the road behind and the road ahead

  2019cites this paper