Establishing the validity of domestication genes using DNA from ancient chickens

No abstract is available for this paper.

• Publication year

  2014

• Venue

  Proceedings of the National Academy of Sciences of the United States of America

• Publication date

  2014-04-21

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1073/pnas.1308939110PMID 24753608PMCID PMC4035994
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• The genomic signature of dog domestication reveals adaptation to a starch-rich diet

  2013cited by this paper
• A bountiful harvest: genomic insights into crop domestication phenotypes.

  2013cited by this paper
• Molecular consequences of animal breeding.

  2013cited by this paper
• Selkirk Rex: morphological and genetic characterization of a new cat breed.

  2012cited by this paper
• How selective sweeps in domestic animals provide new insight into biological mechanisms

  2012cited by this paper
• Chicken domestication: an updated perspective based on mitochondrial genomes

  2012cited by this paper
• Mutations in DMRT3 affect locomotion in horses and spinal circuit function in mice

  2012cited by this paper
• Rethinking dog domestication by integrating genetics, archeology, and biogeography

  2012cited by this paper
• Pig Domestication and Human-Mediated Dispersal in Western Eurasia Revealed through Ancient DNA and Geometric Morphometrics

  2012cited by this paper
• Investigating the Global Dispersal of Chickens in Prehistory Using Ancient Mitochondrial DNA Signatures

  2012cited by this paper
• Evolutionary genomics of dog domestication

  2012cited by this paper
• East Asian contributions to Dutch traditional and western commercial chickens inferred from mtDNA analysis.

  2011influential reference
• A Novel Unstable Duplication Upstream of HAS2 Predisposes to a Breed-Defining Skin Phenotype and a Periodic Fever Syndrome in Chinese Shar-Pei Dogs

  2011cited by this paper
• Handbook of the Birds of the World

  2010cited by this paper
• Re-evaluating the history of the wheat domestication gene NAM-B1 using historical plant material

  2010cited by this paper
• Mitochondrial DNA from 3000-year old chickens at the Teouma site, Vanuatu

  2010cited by this paper
• Whole-genome resequencing reveals loci under selection during chicken domestication

  2010cited by this paper
• New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0.

  2010cited by this paper
• Localization of Canine Brachycephaly Using an Across Breed Mapping Approach

  2010cited by this paper
• The IGF1 small dog haplotype is derived from Middle Eastern grey wolves

  2010cited by this paper
• Origin of Hungarian indigenous chicken breeds inferred from mitochondrial DNA D-loop sequences.

  2010cited by this paper
• Coat Color Variation at the Beginning of Horse Domestication

  2009cited by this paper
• Copy Number Variation in Intron 1 of SOX5 Causes the Pea-comb Phenotype in Chickens

  2009cited by this paper
• The Earliest Horse Harnessing and Milking

  2009cited by this paper
• Contrasting Mode of Evolution at a Coat Color Locus in Wild and Domestic Pigs

  2009cited by this paper
• An Expressed Fgf4 Retrogene Is Associated with Breed-Defining Chondrodysplasia in Domestic Dogs

  2009cited by this paper
• A cis-acting regulatory mutation causes premature hair graying and susceptibility to melanoma in the horse

  2008cited by this paper
• A Mutation in Hairless Dogs Implicates FOXI3 in Ectodermal Development

  2008cited by this paper
• Barking up the wrong tree: Modern northern European dogs fail to explain their origin

  2008cited by this paper
• Identification of the Yellow Skin Gene Reveals a Hybrid Origin of the Domestic Chicken

  2008influential reference
• Indo-European and Asian origins for Chilean and Pacific chickens revealed by mtDNA

  2008cited by this paper
• A Single IGF1 Allele Is a Major Determinant of Small Size in Dogs

  2007cited by this paper
• Radiocarbon and DNA evidence for a pre-Columbian introduction of Polynesian chickens to Chile

  2007influential reference
• Duplication of FGF3, FGF4, FGF19 and ORAOV1 causes hair ridge and predisposition to dermoid sinus in Ridgeback dogs

  2007cited by this paper
• Tracing genetic change over time using nuclear SNPs in ancient and modern cattle.

  2007cited by this paper
• Multiple maternal origins of chickens: out of the Asian jungles.

  2006influential reference
• A NAC Gene Regulating Senescence Improves Grain Protein, Zinc, and Iron Content in Wheat

  2006cited by this paper
• Recharacterization of ancient DNA miscoding lesions: insights in the era of sequencing-by-synthesis

  2006cited by this paper
• Assessing ancient DNA studies.

  2005cited by this paper
• Rise and Fall of the Beringian Steppe Bison

  2004cited by this paper
• Early Allelic Selection in Maize as Revealed by Ancient DNA

  2003cited by this paper
• A regulatory mutation in IGF2 causes a major QTL effect on muscle growth in the pig

  2003cited by this paper
• PAUP*: Phylogenetic analysis using parsimony (*and other methods), Version 4.0b10

  2002cited by this paper
• Dynamics of Pleistocene Population Extinctions in Beringian Brown Bears

  2002cited by this paper
• MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.

  2002cited by this paper
• DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA.

  2001cited by this paper
• Identification and Characterization of a Mammalian Enzyme Catalyzing the Asymmetric Oxidative Cleavage of Provitamin A*

  2001cited by this paper
• Ancient DNA: Do It Right or Not at All

  2000cited by this paper
• Römische Tierhaltung und Tierzucht

  1998cited by this paper
• Reports from the Environmental Archaeology Unit, York 98/7, 23 pp. An assessment of biological remains from excavations at land north of the junction of Foredyke and River Hull, Kingswood, Kingston upon Hull (site code: FOR97)

  1998cited by this paper
• Römische Tierhaltung und Tierzucht : eine Synthese aus archäozoologischer Untersuchung und schriftlich-bildlicher Überlieferung

  1998cited by this paper
• Recensie van N. Benecke, Archäozoologische Studien zur Entwicklung der Haustierhaltung in Mitteleuropa und Südskandinavien von den Anfängen bis zum ausgehenden Mittelalter, Berlin, 1994

  1997cited by this paper
• Double muscling in cattle due to mutations in the myostatin gene.

  1997cited by this paper
• Microsatellite scoring errors associated with noninvasive genotyping based on nuclear DNA amplified from shed hair

  1997cited by this paper
• Archäozoologische Studien zur Entwicklung der Haustierhaltung : in Mitteleuropa und Südskandinavien von den Anfängen bis zum ausgehenden Mittelalter

  1994cited by this paper
• Michael Roaf, Atlas de la Mésopotamie et du Proche-Orient Ancien, Brepols, Turnhout, 1991. Édition française de Cultural Atlas of Mesopotamia and the Ancient Near East, Equinox, Oxford, 1990, traduit de l'anglais par Ph. Talon.

  1993cited by this paper
• Cultural Atlas of Mesopotamia and the Ancient Near East

  1990cited by this paper
• Die Tierwelt des alten Ägypten

  1988cited by this paper
• Did chickens go north? New evidence for domestication

  1988cited by this paper
• Der Lorenzberg bei Epfach : die Spätrömischen und frühmittelalterlichen Anlagen

  1969cited by this paper
• The poultry book : comprising the breading and management of profitable and ornamental poultry, their qualities and characteristics; to which is added "The standard of excellence in exhibition birds," authorized by the Poultry club /

  year unknowncited by this paper

• Population genomics elucidates the trajectory of chicken domestication from Asia to Japan

  2025cites this paper
• Genetic assessment and Identification of genes related to characterization of Guangdong local goose breeds based on modern and historical genomes

  2025cites this paper
• Unraveling the diversity and cultural heritage of fruit crops through paleogenomics

  2024cites this paper
• Signals of selection and ancestry in independently feral Gallus gallus populations

  2024cites this paper
• Significant genomic introgression from grey junglefowl (Gallus sonneratii) to domestic chickens (Gallus gallus domesticus)

  2024cites this paper
• Archaeological and molecular evidence for ancient chickens in Central Asia

  2024cites this paper
• The biocultural origins and dispersal of domestic chickens

  2022cites this paper
• The genomic history and global expansion of domestic donkeys

  2022cites this paper
• Domestication of poultry

  2022cites this paper
• Redefining the timing and circumstances of the chicken's introduction to Europe and north-west Africa

  2022cites this paper
• Effects of the domestic thyroid stimulating hormone receptor (TSHR) variant on the hypothalamic-pituitary-thyroid axis and behavior in chicken.

  2021cites this paper
• Ancient DNA analysis

  2021cites this paper
• The mammalian brain under domestication: Discovering patterns after a century of old and new analyses

  2021cites this paper
• In search of Estonia’s earliest chicken

  2021cites this paper
• The neural crest cell hypothesis: no unified explanation for domestication

  2021cites this paper
• Combined approaches identify known and novel genes associated with sheep litter size and non-seasonal breeding.

  2021cites this paper
• Origin of the domestic chicken from modern biological and zooarchaeological approaches

  2021cites this paper
• The earliest evidence of chicken in Italy

  2021cites this paper
• Ancient DNA analysis

  2021cites this paper
• Inferring the timing and strength of natural selection and gene migration in the evolution of chicken from ancient DNA data

  2021cites this paper
• Estimation of Natural Selection and Allele Age from Time Series Allele Frequency Data Using a Novel Likelihood-Based Approach

  2020cites this paper
• Were domestic camelids present on the prehispanic South American agricultural frontier? An ancient DNA study

  2020cites this paper
• Avian Physiology: Are Birds Simply Feathered Mammals?

  2020cites this paper
• Animal domestication in the era of ancient genomics

  2020cites this paper
• Analyses of mitogenomic markers shed light on the divergence, population dynamics, and demographic history of Pakistani chickens

  2020cites this paper
• 863 genomes reveal the origin and domestication of chicken

  2020cites this paper
• European and Asian contribution to the genetic diversity of mainland South American chickens

  2020cites this paper
• Ancient DNA

  2019cites this paper
• Structural and dynamic analysis of G558R mutation in chicken TSHR gene shows altered signal transduction and corroborates its role as a domestication gene.

  2019cites this paper
• Maximum likelihood estimation of natural selection and allele age from time series data of allele frequencies

  2019cites this paper
• The Promise of Paleogenomics Beyond Our Own Species.

  2019cites this paper
• Ancient Genomes Reveal Unexpected Horse Domestication and Management Dynamics

  2019cites this paper
• Beyond curse or blessing: the opportunities and challenges of aDNA analysis

  2019cites this paper
• Accumulation of genetic variants associated with immunity in the selective breeding of broilers

  2019cites this paper
• Morphological diversity of integumentary traits in fowl domestication: Insights from disparity analysis and embryonic development

  2019cites this paper
• Avian Genomics in Animal Breeding and the End of the Model Organism

  2019cites this paper
• No “doom” in chicken domestication?

  2019cites this paper
• Current status and future perspectives of archaeornithology: reconstructing the palaeoecology of avian species using zooarchaeological bird bones

  2019cites this paper
• Whole-Genome Resequencing of Red Junglefowl and Indigenous Village Chicken Reveal New Insights on the Genome Dynamics of the Species

  2018cites this paper
• Population Genomics of Animal Domestication and Breed Development

  2018cites this paper
• Biogeography

  2018cites this paper
• The broiler chicken as a signal of a human reconfigured biosphere

  2018cites this paper
• Sheep genome functional annotation reveals proximal regulatory elements contributed to the evolution of modern breeds

  2018cites this paper
• Complete mitogenomes of ancient Caribbean Guinea pigs (Cavia porcellus)

  2018cites this paper
• Inherited copy number variation in the chicken genome and association with breast muscle traits

  2018cites this paper
• A genetic perspective on the domestication continuum

  2018cites this paper
• Ancient DNA in Zooarchaeology: New Methods, New Questions and Settling Old Debates in Pacific Commensal Studies

  2018cites this paper
• Bridging Archaeology and Genetics

  2018cites this paper
• Population size may shape the accumulation of functional mutations following domestication

  2018cites this paper
• Paleogenomics of Animal Domestication

  2018cites this paper
• The palaeogenetics of cat dispersal in the ancient world

  2017cites this paper
• Inferring Allele Frequency Trajectories from Ancient DNA Indicates That Selection on a Chicken Gene Coincided with Changes in Medieval Husbandry Practices

  2017influential citation
• Harnessing ancient genomes to study the history of human adaptation

  2017cites this paper
• Mitochondrial DNA D‐loop haplogroup contributions to the genetic diversity of East European domestic chickens from Russia

  2017cites this paper
• Genetic evidence from mitochondrial DNA corroborates the origin of Tibetan chickens

  2017cites this paper
• Taming the Past: Ancient DNA and the Study of Animal Domestication.

  2017cites this paper
• Mitochondrial DNA study in domestic chicken

  2017cites this paper
• Diurnal and photoperiodic changes in thyrotrophin‐stimulating hormone β expression and associated regulation of deiodinase enzymes (DIO2, DIO3) in the female juvenile chicken hypothalamus

  2017cites this paper
• The analysis of the mtDNA D-loop polymorphism for assessing the population diversity of the Pavlov chicken breed

  2017cites this paper
• Chapter 4. Tracing domestication and selection in animal genomes

  2017cites this paper
• The ecology of chickens: an examination of the introduction of the domestic chicken across Europe after the Bronze Age.

  2017cites this paper
• Avian Provocation: Roosters and Rime Royal in Fifteenth-Century Fable

  2017cites this paper
• Combined hybridization capture and shotgun sequencing for ancient DNA analysis of extinct wild and domestic dromedary camel

  2016cites this paper
• Holocene cultural history of Red jungle fowl (Gallus gallus) and its domestic descendant in East Asia

  2016cites this paper
• New perspectives on the ecology of early domestic fowl: An interdisciplinary approach

  2016cites this paper
• Biogeography of the Anthropocene

  2016cites this paper
• A Comparison of Genetic Variations among Native and some Local Chicken Populations in Turkey

  2016cites this paper
• Spotted phenotypes in horses lost attractiveness in the Middle Ages

  2016cites this paper
• New genetic and morphological evidence suggests a single hoaxer created ‘Piltdown man’

  2016cites this paper
• The Evolutionary Origin and Genetic Makeup of Domestic Horses

  2016cites this paper
• Chicken domestication : Effects of tameness on brain gene expression and DNA methylation

  2016cites this paper
• Research article, Biological Sciences - Anthropology, Genetics Of cats and men: the paleogenetic history of the dispersal of cats in the ancient world

  2016cites this paper
• Feralisation targets different genomic loci to domestication in the chicken

  2016cites this paper
• A domestication related mutation in the thyroid stimulating hormone receptor gene (TSHR) modulates photoperiodic response and reproduction in chickens.

  2016cites this paper
• Biology of stress in poultry with emphasis on glucocorticoids and the heterophil to lymphocyte ratio.

  2016cites this paper
• Genetic Diversity of NHE1, Receptor for Subgroup J Avian Leukosis Virus, in Domestic Chicken and Wild Anseriform Species

  2016cites this paper
• Major transitions in human evolution revisited: a tribute to ancient DNA.

  2015cites this paper
• Functional classification of 15 million SNPs detected from diverse chicken populations

  2015cites this paper
• Next-generation paleornithology: Technological and methodological advances allow new insights into the evolutionary and ecological histories of living birds

  2015cites this paper
• Genetic Diversity and Population Structure Analysis Between Indian Red Jungle Fowl and Domestic Chicken Using Microsatellite Markers

  2015cites this paper
• The Effect of a Mutation in the Thyroid Stimulating Hormone Receptor (TSHR) on Development, Behaviour and TH Levels in Domesticated Chickens

  2015cites this paper
• Core questions in domestication research

  2015cites this paper
• It's more than stamp collecting: how genome sequencing can unify biological research.

  2015cites this paper
• The future of ancient DNA: Technical advances and conceptual shifts

  2015cites this paper
• Maternal genealogical patterns of chicken breeds sampled in Europe.

  2015cites this paper
• Earliest economic exploitation of chicken outside East Asia: Evidence from the Hellenistic Southern Levant

  2015cites this paper
• Third Report on Chicken Genes and Chromosomes 2015

  2015cites this paper
• Evidence of long-term gene flow and selection during domestication from analyses of Eurasian wild and domestic pig genomes

  2015cites this paper
• A Next Generation Semiconductor Based Sequencing Approach for the Identification of Meat Species in DNA Mixtures

  2015cites this paper
• Genetic loci inherited from hens lacking maternal behaviour both inhibit and paradoxically promote this behaviour

  2015cites this paper
• Speciation and domestication in Suiformes: a genomic perspective

  2015cites this paper
• Current perspectives and the future of domestication studies

  2014cites this paper
• Global diversity and genetic contributions of chicken populations from African, Asian and European regions.

  2014cites this paper
• No evidence against Polynesian dispersal of chickens to pre-Columbian South America

  2014cites this paper
• The Evolution of Animal Domestication

  2014cites this paper
• Early Holocene chicken domestication in northern China

  2014cites this paper
• Effects of domestication related genes on behaviour, physiology and gene expression in chickens

  2014cites this paper
• Chicken project gets off the ground

  2014cites this paper