The DnaA homolog of the hyperthermophilic eubacterium Thermotoga maritima forms an open complex with a minimal 149‐bp origin region in an ATP‐dependent manner

No abstract is available for this paper.

• Publication year

  2006

• Venue

  Genes to Cells

• Publication date

  2006-04-01

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1111/j.1365-2443.2006.00950.xPMID 16611245
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• DNA replication origins in the Schizosaccharomyces pombe genome.

  2005cited by this paper
• Origin recognition and the chromosome cycle

  2005cited by this paper
• Protein Associations in DnaA-ATP Hydrolysis Mediated by the Hda-Replicase Clamp Complex*

  2005cited by this paper
• Formation of an ATP-DnaA-specific Initiation Complex Requires DnaA Arginine 285, a Conserved Motif in the AAA+ Protein Family*

  2005cited by this paper
• Biochemical characterization of Cdc6/Orc1 binding to the replication origin of the euryarchaeon Methanothermobacter thermoautotrophicus.

  2004cited by this paper
• Identification of two origins of replication in the single chromosome of the archaeon Sulfolobus solfataricus.

  2004cited by this paper
• DiaA, a Novel DnaA-binding Protein, Ensures the Timely Initiation of Escherichia coli Chromosome Replication*

  2004cited by this paper
• Building a bacterial orisome: emergence of new regulatory features for replication origin unwinding

  2004cited by this paper
• Where does bacterial replication start? Rules for predicting the oriC region.

  2004cited by this paper
• Two discriminatory binding sites in the Escherichia coli replication origin are required for DNA strand opening by initiator DnaA-ATP.

  2004influential reference
• Evolutionary history and higher order classification of AAA+ ATPases.

  2004cited by this paper
• Structural basis of replication origin recognition by the DnaA protein.

  2003cited by this paper
• Common domains in the initiators of DNA replication in Bacteria, Archaea and Eukarya: combined structural, functional and phylogenetic perspectives.

  2003influential reference
• Distinct replication requirements for the two Vibrio cholerae chromosomes.

  2003cited by this paper
• Thymine‐rich single‐stranded DNA activates Mcm4/6/7 helicase on Y‐fork and bubble‐like substrates

  2003cited by this paper
• The origin recognition complex: from simple origins to complex functions.

  2002cited by this paper
• The bacterial replication initiator DnaA. DnaA and oriC, the bacterial mode to initiate DNA replication.

  2002influential reference
• A Nucleotide Switch in the Escherichia coli DnaA Protein Initiates Chromosomal Replication

  2002cited by this paper
• Mechanism of origin unwinding: sequential binding of DnaA to double‐ and single‐stranded DNA

  2001influential reference
• Hda, a novel DnaA‐related protein, regulates the replication cycle in Escherichia coli

  2001cited by this paper
• Limiting DNA replication to once and only once

  2000cited by this paper
• Phylogenetic Depth of the Bacterial Genera Aquifex and Thermotoga Inferred from Analysis of Ribosomal Protein, Elongation Factor, and RNA Polymerase Subunit Sequences

  2000influential reference
• Origin of replication of Thermotoga maritima.

  2000influential reference
• Bacterial mode of replication with eukaryotic-like machinery in a hyperthermophilic archaeon.

  2000cited by this paper
• Bidirectional migration of SeqA‐bound hemimethylated DNA clusters and pairing of oriC copies in Escherichia coli

  2000cited by this paper
• AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes.

  1999cited by this paper
• Identification of putative chromosomal origins of replication in Archaea

  1999cited by this paper
• Replication cycle‐coordinated change of the adenine nucleotide‐bound forms of DnaA protein in Escherichia coli

  1999cited by this paper
• Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima

  1999influential reference
• Clustered Adenine/Thymine Stretches Are Essential for Function of a Fission Yeast Replication Origin

  1999cited by this paper
• Structural elements of the Streptomyces oriC region and their interactions with the DnaA protein.

  1998influential reference
• Strand compositional asymmetry in bacterial and large viral genomes.

  1998cited by this paper
• The initiator function of DnaA protein is negatively regulated by the sliding clamp of the E. coli chromosomal replicase.

  1998cited by this paper
• Analyzing genomes with cumulative skew diagrams.

  1998cited by this paper
• Genes to cells: edited by Jun-ichi Tomizawa, Blackwell Science Ltd. Institutional: £218.00 (Europe), £242.00 (Rest of World), US$382.00 (USA and Canada). Individual: £65.00 (Europe), £72.00 (Rest of World), US$114.00 (USA and Canada) ISSN 1356 9597

  1997cited by this paper
• Coordinate binding of ATP and origin DNA regulates the ATPase activity of the origin recognition complex.

  1997cited by this paper
• Conformational transition of DnaA protein by ATP: structural analysis of DnaA protein, the initiator of Escherichia coli chromosome replication.

  1997cited by this paper
• Complexes at the replication origin of Bacillus subtilis with homologous and heterologous DnaA protein.

  1997cited by this paper
• Ordered and Sequential Binding of DnaA Protein to oriC, the Chromosomal Origin of Escherichia coli*

  1996influential reference
• Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter

  1995cited by this paper
• Interaction of the Initiator Protein DnaA of Escherichia coli with Its DNA Target (*)

  1995influential reference
• The mutant DnaAcos protein which overinitiates replication of the Escherichia coli chromosome is inert to negative regulation for initiation.

  1994cited by this paper
• Opening of the replication origin of Escherichia coli by DnaA protein with protein HU or IHF.

  1992cited by this paper
• Opposed actions of regulatory proteins, DnaA and IciA, in opening the replication origin of Escherichia coli.

  1992cited by this paper
• Structure and function of DnaA and the DnaA‐box in eubacteria: evolutionary relationships of bacterial replication origins

  1991influential reference
• A novel protein binds a key origin sequence to block replication of an E. coli minichromosome.

  1990cited by this paper
• Bending of DNA by gene-regulatory proteins: construction and use of a DNA bending vector.

  1989cited by this paper
• The dnaA initiator protein binds separate domains in the replication origin of Escherichia coli.

  1989cited by this paper
• A model for initiation at origins of DNA replication.

  1988influential reference
• ATP activates dnaA protein in initiating replication of plasmids bearing the origin of the E. coli chromosome.

  1987influential reference
• Bacterial evolution

  1987cited by this paper
• Histonelike proteins of bacteria.

  1987cited by this paper

• Dual chromosomal origins of replication (oriC) in the genomes of the Halomonadaceae – a prediction study

  2025cites this paper
• DUF-721 and N-terminal extension of the helicase loader DciA bind ssDNA to promote replicative DnaB helicase loading in Caulobacter crescentus

  2025cites this paper
• Thermotoga maritima oriC involves a DNA unwinding element with distinct modules and a DnaA-oligomerizing region with a novel directional binding mode

  2023influential citation
• Single-stranded DNA recruitment mechanism in replication origin unwinding by DnaA initiator protein and HU, an evolutionary ubiquitous nucleoid protein

  2023cites this paper
• Ori-Finder 2022: A Comprehensive Web Server for Prediction and Analysis of Bacterial Replication Origins

  2022cites this paper
• Evidence for a chromosome origin unwinding system broadly conserved in bacteria

  2021cites this paper
• Identification of the Unwinding Region in the Clostridioides difficile Chromosomal Origin of Replication

  2020cites this paper
• Identification of a basal system for unwinding a bacterial chromosome origin

  2019cites this paper
• A novel mode of DnaA–DnaA interaction promotes ADP dissociation for reactivation of replication initiation activity

  2019cites this paper
• Control of bacterial chromosome replication by non-coding regions outside the origin

  2017cites this paper
• Regulatory dynamics in the ternary DnaA complex for initiation of chromosomal replication in Escherichia coli

  2017cites this paper
• Targeting the Bacterial Orisome in the Search for New Antibiotics

  2017cites this paper
• The bacterial DnaA-trio replication origin element specifies ssDNA initiator binding

  2016cites this paper
• Genome-Scale Modeling of Thermophilic Microorganisms.

  2016cites this paper
• The Arg Fingers of Key DnaA Protomers Are Oriented Inward within the Replication Origin oriC and Stimulate DnaA Subcomplexes in the Initiation Complex*

  2015cites this paper
• Beyond DnaA: the role of DNA topology and DNA methylation in bacterial replication initiation.

  2014cites this paper
• oriC-encoded instructions for the initiation of bacterial chromosome replication

  2014influential citation
• Loading mechanisms of ring helicases at replication origins

  2012influential citation
• Differentiation of the DnaA-oriC Subcomplex for DNA Unwinding in a Replication Initiation Complex*

  2012cites this paper
• AT-rich region and repeated sequences - the essential elements of replication origins of bacterial replicons.

  2012cites this paper
• Stable nucleotide binding to DnaA requires a specific glutamic acid residue within the AAA+ box II motif.

  2012cites this paper
• Identification of a replication initiation protein of the pVV8 plasmid from Thermus thermophilus HB8

  2012cites this paper
• Control of the replication initiator DnaA by an anti‐cooperativity factor

  2011cites this paper
• Highly organized DnaA–oriC complexes recruit the single-stranded DNA for replication initiation

  2011cites this paper
• AIMS AND SCOPE

  2011cites this paper
• DnaA structure, function, and dynamics in the initiation at the chromosomal origin.

  2009cites this paper
• Localized melting of duplex DNA by Cdc6/Orc1 at the DNA replication origin in the hyperthermophilic archaeon Pyrococcus furiosus

  2009cites this paper
• Roles for the AAA+ motifs of DnaA in the initiation of DNA replication.

  2008cites this paper
• A Common Mechanism for the ATP-DnaA-dependent Formation of Open Complexes at the Replication Origin*

  2008cites this paper
• The interaction of DiaA and DnaA regulates the replication cycle in E. coli by directly promoting ATP DnaA-specific initiation complexes.

  2007cites this paper
• Mechanism for the TtDnaA–Tt-oriC cooperative interaction at high temperature and duplex opening at an unusual AT-rich region in Thermoanaerobacter tengcongensis

  2007cites this paper
• Regulation of the initiation of chromosomal replication in bacteria.

  2007cites this paper
• Index

  2006cites this paper
• The exceptionally tight affinity of DnaA for ATP/ADP requires a unique aspartic acid residue in the AAA+ sensor 1 motif

  2006cites this paper