RNA-directed DNA methylation regulates parental genomic imprinting at several loci in Arabidopsis

No abstract is available for this paper.

• Publication year

  2013

• Venue

  Development

• Publication date

  2013-07-15

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1242/dev.092981PMID 23760956PMCID PMC3879202
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Comprehensive developmental profiles of gene activity in regions and subregions of the Arabidopsis seed

  2013cited by this paper
• Hypothesis: selection of imprinted genes is driven by silencing deleterious gene activity in somatic tissues.

  2012cited by this paper
• DNA methylation dynamics during sexual reproduction in Arabidopsis thaliana.

  2012cited by this paper
• Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA.

  2012cited by this paper
• Extensive, clustered parental imprinting of protein-coding and noncoding RNAs in developing maize endosperm

  2011cited by this paper
• An Atypical Epigenetic Mechanism Affects Uniparental Expression of Pol IV-Dependent siRNAs

  2011cited by this paper
• Role for piRNAs and Noncoding RNA in de Novo DNA Methylation of the Imprinted Mouse Rasgrf1 Locus

  2011cited by this paper
• Germline specification and function in plants.

  2011cited by this paper
• Parent-of-Origin Effects on Gene Expression and DNA Methylation in the Maize Endosperm[W]

  2011cited by this paper
• A Genome-Wide Survey of Imprinted Genes in Rice Seeds Reveals Imprinting Primarily Occurs in the Endosperm

  2011cited by this paper
• A Case-by-Case Evolutionary Analysis of Four Imprinted Retrogenes

  2011cited by this paper
• High-Resolution Analysis of Parent-of-Origin Allelic Expression in the Arabidopsis Endosperm

  2011cited by this paper
• Regulation of imprinted gene expression in Arabidopsis endosperm

  2011cited by this paper
• Genomic imprinting: the emergence of an epigenetic paradigm

  2011cited by this paper
• Function of the DEMETER DNA glycosylase in the Arabidopsis thaliana male gametophyte

  2011cited by this paper
• HMG domain containing SSRP1 is required for DNA demethylation and genomic imprinting in Arabidopsis.

  2011cited by this paper
• Genomic Analysis of Parent-of-Origin Allelic Expression in Arabidopsis thaliana Seeds

  2011cited by this paper
• Transduction of RNA‐directed DNA methylation signals to repressive histone marks in Arabidopsis thaliana

  2010cited by this paper
• Establishing, maintaining and modifying DNA methylation patterns in plants and animals

  2010cited by this paper
• Epigenetic Reprogramming in Plant and Animal Development

  2010cited by this paper
• Inaugural Article: Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors

  2010cited by this paper
• Retrotransposon silencing by DNA methylation contributed to the evolution of placentation and genomic imprinting in mammals

  2010cited by this paper
• Epigenetic resetting of a gene imprinted in plant embryos.

  2009cited by this paper
• Gamete-specific epigenetic mechanisms shape genomic imprinting.

  2009cited by this paper
• Genomic imprinting: employing and avoiding epigenetic processes.

  2009cited by this paper
• Uniparental expression of PolIV-dependent siRNAs in developing endosperm of Arabidopsis

  2009cited by this paper
• Epigenetic asymmetry in the zygote and mammalian development.

  2009cited by this paper
• DNA demethylation by DNA repair.

  2009cited by this paper
• A stepwise pathway for biogenesis of 24‐nt secondary siRNAs and spreading of DNA methylation

  2009cited by this paper
• The two male gametes share equal ability to fertilize the egg cell in Arabidopsis thaliana.

  2009cited by this paper
• Selective epigenetic control of retrotransposition in Arabidopsis

  2009cited by this paper
• Comparative Transcriptomics of Arabidopsis Sperm Cells1[C][W]

  2008cited by this paper
• Evolution and Control of Imprinted FWA Genes in the Genus Arabidopsis

  2008cited by this paper
• Retinoblastoma and Its Binding Partner MSI1 Control Imprinting in Arabidopsis

  2008cited by this paper
• F-Actin Organization and Pollen Tube Tip Growth in Arabidopsis Are Dependent on the Gametophyte-Specific Armadillo Repeat Protein ARO1[W]

  2008cited by this paper
• Analyzing real-time PCR data by the comparative CT method

  2008cited by this paper
• Epigenetic inheritance and reprogramming in plants and fission yeast.

  2008cited by this paper
• MATERNALLY EXPRESSED PAB C-TERMINAL, a Novel Imprinted Gene in Arabidopsis, Encodes the Conserved C-Terminal Domain of Polyadenylate Binding Proteins[W]

  2008cited by this paper
• Highly integrated single-base resolution maps of the epigenome in Arabidopsis.

  2008cited by this paper
• Tandem repeats upstream of the Arabidopsis endogene SDC recruit non-CG DNA methylation and initiate siRNA spreading.

  2008cited by this paper
• PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis

  2008cited by this paper
• Convergent evolution of genomic imprinting in plants and mammals.

  2007cited by this paper
• Heritable epigenetic mutation of a transposon‐flanked Arabidopsis gene due to lack of the chromatin‐remodeling factor DDM1

  2007cited by this paper
• Epigenetic asymmetry of imprinted genes in plant gametes

  2006cited by this paper
• Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis.

  2005cited by this paper
• Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation.

  2005cited by this paper
• RNA Polymerase IV Directs Silencing of Endogenous DNA

  2005cited by this paper
• FIE and CURLY LEAF polycomb proteins interact in the regulation of homeobox gene expression during sporophyte development.

  2004cited by this paper
• An evolutionary scenario for genomic imprinting of Impact lying between nonimprinted neighbors.

  2004cited by this paper
• One-Way Control of FWA Imprinting in Arabidopsis Endosperm by DNA Methylation

  2004cited by this paper
• Identification of new members of Fertilisation Independent Seed Polycomb Group pathway involved in the control of seed development in Arabidopsis thaliana

  2004cited by this paper
• The potential role of gene duplications in the evolution of imprinting mechanisms.

  2003cited by this paper
• Maintenance of CpG methylation is essential for epigenetic inheritance during plant gametogenesis

  2003cited by this paper
• What good is genomic imprinting: the function of parent-specific gene expression

  2003cited by this paper
• Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation.

  2003cited by this paper
• Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing.

  2002cited by this paper
• Reduced DNA methylation in Arabidopsis thaliana results in abnormal plant development.

  1996cited by this paper

• The role of imprinted gene ZmFIE1 during maize kernel development

  2025cites this paper
• Molecular characterization of capulet2 reveals the importance of ANAPHASE PROMOTING COMPLEX 6 maternal expression in endosperm development

  2025cites this paper
• Transcriptomic Signatures of Interspecific Brassica Hybrids Reveal the Molecular Basis of Viviparous Seed Development

  2025cites this paper
• Integrative Analysis of Omics Reveals RdDM Pathway Participation in the Initiation of Rice Microspore Embryogenesis Under Cold Treatment

  2025cites this paper
• Two imprinted genes primed by DME in the central cell and activated by WRKY10 in the endosperm.

  2024cites this paper
• Research progress of seed dormancy and germination regulation

  2024cites this paper
• Parental dialectic: Epigenetic conversations in endosperm.

  2024cites this paper
• Imprinting but not cytonuclear interactions determines seed size heterosis in Arabidopsis hybrids.

  2024cites this paper
• Small RNA-mediated DNA methylation during plant reproduction.

  2023cites this paper
• Paternal imprinting in Marchantia polymorpha.

  2023cites this paper
• Imprinting but not cytonuclear interactions affects parent-of-origin effect on seed size in Arabidopsis hybrids

  2023cites this paper
• Upstream regulator of genomic imprinting in rice endosperm is a small RNA-associated chromatin remodeler

  2023cites this paper
• Regulation of DNA Methylation During Plant Endosperm Development

  2022cites this paper
• Spatial and Temporal Regulation of Parent-of-Origin Allelic

  2022cites this paper
• Plant Small RNAs: Their Biogenesis, Regulatory Roles, and Functions.

  2022cites this paper
• Genomic imprinting regulates establishment and release of seed dormancy.

  2022cites this paper
• Canalization of genome-wide transcriptional activity in Arabidopsis thaliana accessions by MET1-dependent CG methylation

  2022cites this paper
• Dual role of specific promoter tandem repeats integrating epigenetic silencing with heat response.

  2022cites this paper
• RNA Pol IV induces antagonistic parent-of-origin effects on Arabidopsis endosperm

  2022cites this paper
• Parental and Environmental Control of Seed Dormancy in Arabidopsis thaliana.

  2022cites this paper
• Spatial and temporal regulation of parent-of-origin allelic expression in the endosperm

  2022cites this paper
• RNA Pol IV has antagonistic parent-of-origin effects on Arabidopsis endosperm

  2021cites this paper
• Bypassing reproductive barriers in hybrid seeds using chemically induced epimutagenesis

  2021cites this paper
• DNA Methylation Level Changes in Transgenic Chinese Cabbage (Brassica rapa ssp. pekinensis) Plants and Their Effects on Corresponding Gene Expression Patterns

  2021cites this paper
• License to Regulate: Noncoding RNA Special Agents in Plant Meiosis and Reproduction

  2021cites this paper
• Chemically-induced epimutagenesis allows bypassing reproductive barriers in hybrid seeds

  2021cites this paper
• Divergence among rice cultivars reveals roles for transposition and epimutation in ongoing evolution of genomic imprinting

  2021cites this paper
• Dynamics of DNA Methylation and Its Functions in Plant Growth and Development

  2021cites this paper
• SDC mediates DNA methylation-controlled clock pace by interacting with ZTL in Arabidopsis

  2021cites this paper
• Maternal regulation of seed growth and patterning in flowering plants.

  2020cites this paper
• Genomic imprinting in plants—revisiting existing models

  2020cites this paper
• Loss of Small-RNA-Directed DNA Methylation in the Plant Cell Cycle Promotes Germline Reprogramming and Somaclonal Variation.

  2020cites this paper
• RNA-directed DNA Methylation

  2020cites this paper
• [Advances in research on the mechanism of DNA methylation in plants].

  2020influential citation
• Small RNA Function in Plants: From Chromatin to the Next Generation.

  2020cites this paper
• MethGET: web-based bioinformatics software for correlating genome-wide DNA methylation and gene expression

  2020cites this paper
• Methylation Changes in Response to Hypoxic Stress in Wheat Regulated by Methyltransferases

  2020cites this paper
• Does variable epigenetic inheritance fuel plant evolution?

  2020cites this paper
• Paternally Acting Canonical RNA-Directed DNA Methylation Pathway Genes Sensitize Arabidopsis Endosperm to Paternal Genome Dosage[OPEN]

  2019cites this paper
• Maternal small RNAs mediate spatial-temporal regulation of gene expression, imprinting, and seed development in Arabidopsis

  2019cites this paper
• Non-canonical RNA-directed DNA methylation participates in maternal and environmental control of seed dormancy

  2019cites this paper
• Regulation of Parent-of-Origin Allelic Expression in Arabidopsis thaliana endosperm

  2019influential citation
• Paternally-acting canonical RNA-directed DNA methylation pathway genes sensitize Arabidopsis endosperm to paternal genome dosage

  2019cites this paper
• Antiviral Resistance in Plants

  2019cites this paper
• Reverse Genetic Analysis of Antiviral Resistance Signaling and the Resistance Mechanism in Arabidopsis thaliana.

  2019cites this paper
• Epigenetics Regulates Reproductive Development in Plants

  2019cites this paper
• Endosperm and Seed Transcriptomes Reveal Possible Roles for Small RNA Pathways in Wild Tomato Hybrid Seed Failure

  2019cites this paper
• Regulation of Parent-of-Origin Allelic Expression in the Endosperm1[OPEN]

  2019cites this paper
• Dynamic DNA Methylation in Plant Growth and Development

  2018cites this paper
• DNA demethylase ROS1 negatively regulates the imprinting of DOGL4 and seed dormancy in Arabidopsis thaliana

  2018cites this paper
• FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development1[OPEN]

  2018cites this paper
• Small RNA pathways responsible for non-cell-autonomous regulation of plant reproduction

  2018cites this paper
• EARLY FLOWERING IN SHORT DAYS (EFS) regulates the seed size in Arabidopsis

  2018cites this paper
• Dynamics and function of DNA methylation in plants

  2018cites this paper
• Characterization of Imprinted Genes in Rice Reveals Conservation of Regulation and Imprinting with Other Plant Species1[OPEN]

  2018cites this paper
• Characterization of imprinted genes in rice reveals post-fertilization regulation and conservation at some loci of imprinting in plant species

  2017cites this paper
• Role of small RNAs in epigenetic reprogramming during plant sexual reproduction.

  2017cites this paper
• Effect of Feeding Conditions on the Methylation Status of Fatp1 Gene in Chicken Breast Muscle

  2017cites this paper
• A Small RNA Pathway Mediates Allelic Dosage in Endosperm.

  2017cites this paper
• DNA methylation and imprinting in plants: machinery and mechanisms

  2017influential citation
• Epigenetic processes in flowering plant reproduction

  2017cites this paper
• A small RNA pathway mediates global allelic dosage in endosperm

  2017cites this paper
• Arabidopsis LORELEI, a Maternally Expressed Imprinted Gene, Promotes Early Seed Development1[OPEN]

  2017cites this paper
• DNA Methylation in Eukaryotes: Regulation and Function

  2017cites this paper
• Genomic Imprinting in the Endosperm Is Systematically Perturbed in Abortive Hybrid Tomato Seeds

  2016cites this paper
• Epigenetic inheritance in apomictic dandelions

  2016cites this paper
• Maternal Gametophyte Effects on Seed Development in Maize

  2016cites this paper
• Update on Plant Gene Imprinting Endosperm and Imprinting , Inextricably Linked 1 [ OPEN ]

  2016cites this paper
• Endosperm and Imprinting, Inextricably Linked1[OPEN]

  2016cites this paper
• Analysis of Argonaute-Chromatin Interactions in Human Somatic Cells

  2016cites this paper
• DNA Methylation and Demethylation in Plant Immunity.

  2016cites this paper
• Going mobile: non-cell-autonomous small RNAs shape the genetic landscape of plants.

  2015cites this paper
• The Application of Next Generation Sequencing Techniques to Plant Epigenomics

  2015cites this paper
• Nuclear Functions in Plant Transcription, Signaling and Development

  2015cites this paper
• Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm

  2015influential citation
• The expanding world of small RNAs in plants

  2015cites this paper
• Evolution and function of genomic imprinting in plants

  2015cites this paper
• Imprinting in plants as a mechanism to generate seed phenotypic diversity

  2015cites this paper
• Setting the Stage for the Next Generation: Epigenetic Reprogramming During Sexual Plant Reproduction

  2015cites this paper
• The Role of DNA Methylation in Transposable Element Silencing and Genomic Imprinting

  2015influential citation
• Genomic imprinting in plants: what makes the functions of paternal and maternal genes different in endosperm formation?

  2014cites this paper
• DNA methylation as a system of plant genomic immunity.

  2014cites this paper
• Accessible DNA and Relative Depletion of H3K9me2 at Maize Loci Undergoing RNA-Directed DNA Methylation[W][OPEN]

  2014cites this paper
• Epigenetics Connects the Genome to Its Environment

  2014cites this paper
• Dynamic parent-of-origin effects on small interfering RNA expression in the developing maize endosperm

  2014influential citation
• Natural epigenetic polymorphisms lead to intraspecific variation in Arabidopsis gene imprinting

  2014cites this paper
• Transgenerational Epigenetic Inheritance : Myths and Mechanisms

  2014cites this paper
• Overproduction of stomatal lineage cells in Arabidopsis mutants defective in active DNA demethylation

  2014cites this paper
• Transgenerational epigenetic inheritance: myths and mechanisms.

  2014cites this paper
• Sustainable harvest: managing plasticity for resilient crops

  2014cites this paper
• Seed evolution: parental conflicts in a multi-generational household

  2014cites this paper
• Heat-Induced Release of Epigenetic Silencing Reveals the Concealed Role of an Imprinted Plant Gene

  2014cites this paper
• RNA-directed DNA methylation: an epigenetic pathway of increasing complexity

  2014cites this paper
• Genome dosage and parent of origin effects in a ploidy series of Arabidopsis thaliana

  2013cites this paper
• Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA.

  2012cites this paper
• Article Reference Heat-induced Release of Epigenetic Silencing Reveals the Concealed Role of an Imprinted Plant Gene Heat-induced Release of Epigenetic Silencing Reveals the Concealed Role of an Imprinted Plant Gene

  year unknowncites this paper