Annals of the New York Academy of Sciences Evolutionary Dynamics and Information Hierarchies in Biological Systems

No abstract is available for this paper.

• Publication year

  year unknown

• Venue

  Unknown venue

• Publication date

  Unknown publication date

• Fields of study

  Not labeled

• Identifiers

  No identifiers available.

• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

• Broad Conditions Favor the Evolution of Phase-Variable Loci

  2013cited by this paper
• Evolutionary Transitions and Top-Down Causation

  2012cited by this paper
• Recovering ensembles of chromatin conformations from contact probabilities

  2012cited by this paper
• Identification of ORC1/CDC6-Interacting Factors in Trypanosoma brucei Reveals Critical Features of Origin Recognition Complex Architecture

  2012cited by this paper
• The algorithmic origins of life

  2012cited by this paper
• Clustered mutations in yeast and in human cancers can arise from damaged long single-strand DNA regions.

  2012cited by this paper
• Robust 4C-seq data analysis to screen for regulatory DNA interactions

  2012cited by this paper
• Chromatin organization is a major influence on regional mutation rates in human cancer cells

  2012cited by this paper
• Mutational Processes Molding the Genomes of 21 Breast Cancers

  2012cited by this paper
• Short nucleosome repeats impose rotational modulations on chromatin fibre folding

  2012cited by this paper
• Dynamics of forced nucleosome unraveling and role of nonuniform histone-DNA interactions.

  2012cited by this paper
• Two Mechanisms Produce Mutation Hotspots at DNA Breaks in Escherichia coli

  2012cited by this paper
• Emergence of diversity in a model ecosystem.

  2012cited by this paper
• Identity and Function of a Large Gene Network Underlying Mutagenic Repair of DNA Breaks

  2012cited by this paper
• Clonal Interference in the Evolution of Influenza

  2012cited by this paper
• A Polycomb-based switch underlying quantitative epigenetic memory

  2011cited by this paper
• eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges

  2011cited by this paper
• Glycolytic Oscillations and Limits on Robust Efficiency

  2011cited by this paper
• Ecosystems with mutually exclusive interactions self-organize to a state of high diversity.

  2011cited by this paper
• Impact of a stress-inducible switch to mutagenic repair of DNA breaks on mutation in Escherichia coli

  2011cited by this paper
• Architecture, constraints, and behavior

  2011cited by this paper
• Dissecting chromatin interactions in living cells from protein mobility maps

  2010cited by this paper
• Two thymidine hydroxylases differentially regulate the formation of glucosylated DNA at regions flanking polymerase II polycistronic transcription units throughout the genome of Trypanosoma brucei

  2010cited by this paper
• Relationship between nucleosome positioning and DNA methylation

  2010cited by this paper
• A Toolbox Model of Evolution of Metabolic Pathways on Networks of Arbitrary Topology

  2010cited by this paper
• Transmission of Single HIV-1 Genomes and Dynamics of Early Immune Escape Revealed by Ultra-Deep Sequencing

  2010cited by this paper
• Bloodstream form trypanosome plasma membrane proteins: antigenic variation and invariant antigens

  2010cited by this paper
• Fitness flux and ubiquity of adaptive evolution

  2010cited by this paper
• Increased mortality and AIDS-like immunopathology in wild chimpanzees infected with SIVcpz

  2009cited by this paper
• Evidence for heteromorphic chromatin fibers from analysis of nucleosome interactions

  2009cited by this paper
• Chromatin organization marks exon-intron structure

  2009cited by this paper
• Multiscale analysis of dynamics and interactions of heterochromatin protein 1 by fluorescence fluctuation microscopy.

  2009cited by this paper
• A yeast-endonuclease-generated DNA break induces antigenic switching in Trypanosoma brucei

  2009cited by this paper
• A tale of tails: how histone tails mediate chromatin compaction in different salt and linker histone environments.

  2009cited by this paper
• Pericentric heterochromatin: dynamic organization during early development in mammals.

  2008cited by this paper
• The complex language of chromatin regulation during transcription

  2007cited by this paper
• Analysis of the VSG gene silent archive in Trypanosoma brucei reveals that mosaic gene expression is prominent in antigenic variation and is favored by archive substructure.

  2007cited by this paper
• Founder Effects in the Assessment of HIV Polymorphisms and HLA Allele Associations

  2007cited by this paper
• Theoretical analysis of epigenetic cell memory by nucleosome modification.

  2007cited by this paper
• Chimpanzee Reservoirs of Pandemic and Nonpandemic HIV-1

  2006cited by this paper
• A switch from high-fidelity to error-prone DNA double-strand break repair underlies stress-induced mutation.

  2005cited by this paper
• The Genome of the African Trypanosome Trypanosoma brucei

  2005cited by this paper
• The "robust yet fragile" nature of the Internet.

  2005cited by this paper
• Rapid evolution of the neutralizing antibody response to HIV type 1 infection

  2003cited by this paper
• Evidence of HIV-1 Adaptation to HLA-Restricted Immune Responses at a Population Level

  2002cited by this paper
• Using human immunodeficiency virus type 1 sequences to infer historical features of the acquired immune deficiency syndrome epidemic and human immunodeficiency virus evolution.

  2001cited by this paper
• An overview of the molecular phylogeny of lentiviruses

  2001cited by this paper
• Antigenic variation in trypanosomes: enhanced phenotypic variation in a eukaryotic parasite.

  2001cited by this paper
• Making contacts on a nucleic acid polymer.

  2001cited by this paper
• Modeling plasma virus concentration during primary HIV infection.

  2000cited by this paper
• Timing the ancestor of the HIV-1 pandemic strains.

  2000cited by this paper
• Quantitative comparison of DNA looping in vitro and in vivo: chromatin increases effective DNA flexibility at short distances

  1999cited by this paper
• Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase

  1995cited by this paper
• The Expensive-Tissue Hypothesis: The Brain and the Digestive System in Human and Primate Evolution

  1995cited by this paper
• Action at a distance: DNA-looping and initiation of transcription.

  1995cited by this paper
• Recombination in adaptive mutation.

  1994cited by this paper
• Frequent detection and isolation of cytopathic retroviruses (HTLV-III) from patients with AIDS and at risk for AIDS.

  1984cited by this paper
• Isolation of a T-lymphotropic retrovirus from a patient at risk for acquired immune deficiency syndrome (AIDS).

  1983cited by this paper
• Genetics

  1977cited by this paper
• Annals of the New York Academy of Sciences Genome Hyperevolution and the Success of a Parasite

  year unknowncited by this paper

• A Mutation Threshold for Cooperative Takeover

  2022cites this paper
• Integrating Evolutionary and Developmental Thinking Into a Scale-free Biology

  2020cites this paper
• Scale‐Free Biology: Integrating Evolutionary and Developmental Thinking

  2020cites this paper
• Comparative Genomics of Convergent Evolution

  2019cites this paper
• Comparative Genomics of Convergent Evolution

  2019cites this paper
• The theory of graceful extensibility: basic rules that govern adaptive systems

  2018influential citation
• Four concepts for resilience and the implications for the future of resilience engineering

  2015influential citation
• Convergent evolution and the search for biosignatures within the solar system and beyond

  2015cites this paper
• Top-Down Causation and the Rise of Information in the Emergence of Life

  2014cites this paper
• In Darwinian evolution, feedback from natural selection leads to biased mutations

  2013cites this paper
• Hierarchical Structures

  2012cites this paper