Genealogy of families of SINEs in cetaceans and artiodactyls: the presence of a huge superfamily of tRNA(Glu)-derived families of SINEs.

No abstract is available for this paper.

• Publication year

  1999

• Venue

  Molecular biology and evolution

• Publication date

  1999-08-01

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1093/OXFORDJOURNALS.MOLBEV.A026194PMID 10474901
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

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  2009influential reference
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• SINEs and LINEs share common 3' sequences: a review.

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  1997cited by this paper
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  1997cited by this paper
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  1996cited by this paper
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  1994cited by this paper
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• Reconstruction and analysis of human alu genes

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• Hind Limbs of Eocene Basilosaurus: Evidence of Feet in Whales

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• Basic local alignment search tool.

  1990cited by this paper
• Successive waves of fixation of B1 variants in rodent lineage history

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• A fundamental division in the Alu family of repeated sequences.

  1988cited by this paper
• Sources and evolution of human Alu repeated sequences.

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• Nonviral retroposons: genes, pseudogenes, and transposable elements generated by the reverse flow of genetic information.

  1986cited by this paper
• Origins of repeated DNA.

  1985cited by this paper
• Molecular evolution: Origins of repeated DNA

  1985cited by this paper
• Alu sequences are processed 7SL RNA genes

  1984cited by this paper
• SINEs and LINEs: highly repeated short and long interspersed sequences in mammalian genomes.

  1982cited by this paper
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  1980cited by this paper
• An abundant cytoplasmic 7S RNA is complementary to the dominant interspersed middle repetitive DNA sequence family in the human genome.

  1980cited by this paper
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  1977cited by this paper
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