The complete mitochondrial genome sequence of the hornwort Phaeoceros laevis: retention of many ancient pseudogenes and conservative evolution of mitochondrial genomes in hornworts

No abstract is available for this paper.

• Publication year

  2010

• Venue

  Current Genetics

• Publication date

  2010-02-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1007/s00294-009-0279-1PMID 19998039
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Introducing the plant RNA editing prediction and analysis computer tool PREPACT and an update on RNA editing site nomenclature

  2010cited by this paper
• Small RNAs Originated from Pseudogenes: cis- or trans-Acting?

  2009cited by this paper
• Discovery of the rpl10 Gene in Diverse Plant Mitochondrial Genomes and Its Probable Replacement by the Nuclear Gene for Chloroplast RPL10 in Two Lineages of Angiosperms

  2009cited by this paper
• The complete mitochondrial genome sequence of the liverwort Pleurozia purpurea reveals extremely conservative mitochondrial genome evolution in liverworts

  2009cited by this paper
• The Complete Mitochondrial Genome Sequence of the Hornwort Megacerosaenigmaticus Shows a Mixed Mode of Conservative Yet Dynamic Evolution in Early Land Plant Mitochondrial Genomes

  2009cited by this paper
• The mitochondrial genome of the gymnosperm Cycas taitungensis contains a novel family of short interspersed elements, Bpu sequences, and abundant RNA editing sites.

  2008influential reference
• Phylogeny and evolution of charophytic algae and land plants

  2008cited by this paper
• Phylogeny and evolution of charophytic algae and land plants

  2008cited by this paper
• OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes

  2007cited by this paper
• Comparisons Among Two Fertile and Three Male-Sterile Mitochondrial Genomes of Maize

  2007influential reference
• Progress and challenges toward developing a phylogeny and classification of the hornworts

  2007cited by this paper
• Evolution of a pseudogene: exclusive survival of a functional mitochondrial nad7 gene supports Haplomitrium as the earliest liverwort lineage and proposes a secondary loss of RNA editing in Marchantiidae.

  2007cited by this paper
• The deepest divergences in land plants inferred from phylogenomic evidence

  2006cited by this paper
• The mitochondrial genome of the moss Physcomitrella patens sheds new light on mitochondrial evolution in land plants.

  2006cited by this paper
• Large-scale analysis of pseudogenes in the human genome.

  2004cited by this paper
• Ancestors of trans-splicing mitochondrial introns support serial sister group relationships of hornworts and mosses with vascular plants.

  2004cited by this paper
• Mitochondria of protists.

  2004cited by this paper
• Inferring Phylogeny Using Genomic Characters: A Case Study Using Land Plant Plastomes

  2004cited by this paper
• Molecular systematics of bryophytes

  2004cited by this paper
• The mitochondrial DNA of land plants: peculiarities in phylogenetic perspective

  2004influential reference
• Distribution of introns in the mitochondrial gene nad1 in land plants: phylogenetic and molecular evolutionary implications.

  2004cited by this paper
• The complete nucleotide sequence and RNA editing content of the mitochondrial genome of rapeseed (Brassica napus L.): comparative analysis of the mitochondrial genomes of rapeseed and Arabidopsis thaliana.

  2003influential reference
• RNA editing in hornwort chloroplasts makes more than half the genes functional.

  2003cited by this paper
• The Mitochondrial Genome of Chara vulgaris: Insights into the Mitochondrial DNA Architecture of the Last Common Ancestor of Green Algae and Land Plants Online version contains Web-only data. Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.013

  2003influential reference
• The chloroplast and mitochondrial genome sequences of the charophyte Chaetosphaeridium globosum: Insights into the timing of the events that restructured organelle DNAs within the green algal lineage that led to land plants

  2002cited by this paper
• Divergent Intron Conservation in the Mitochondrial nad2 Gene: Signatures for the Three Bryophyte Classes (Mosses, Liverworts, and Hornworts) and the Lycophytes

  2002cited by this paper
• Inaugural Article: Punctuated evolution of mitochondrial gene content: High and variable rates of mitochondrial gene loss and transfer to the nucleus during angiosperm evolution

  2002cited by this paper
• REPuter: the manifold applications of repeat analysis on a genomic scale.

  2001cited by this paper
• Dynamic evolution of plant mitochondrial genomes: mobile genes and introns and highly variable mutation rates.

  2000cited by this paper
• Plant Mitochondrial RNA Editing

  1999cited by this paper
• The gain of three mitochondrial introns identifies liverworts as the earliest land plants

  1998cited by this paper
• Trans-splicing group II introns in plant mitochondria: the complete set of cis-arranged homologs in ferns, fern allies, and a hornwort.

  1998cited by this paper
• An ancestral mitochondrial DNA resembling a eubacterial genome in miniature

  1997cited by this paper
• tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

  1997cited by this paper
• The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides

  1997cited by this paper
• The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

  1997cited by this paper
• The Plant Mitochondrial Genome: Physical Structure, Information Content, RNA Editing, and Gene Migration to the Nucleus

  1994cited by this paper
• The Hepaticae and Anthocerotae of North America.

  1993cited by this paper
• Gene organization deduced from the complete sequence of liverwort Marchantia polymorpha mitochondrial DNA. A primitive form of plant mitochondrial genome.

  1992cited by this paper
• Small repeated sequences and the structure of plant mitochondrial genomes.

  1992cited by this paper
• Basic local alignment search tool.

  1990cited by this paper
• The mitochondrial genome of

  1989cited by this paper
• Comparative organization of chloroplast genomes.

  1985cited by this paper
• Conservation of RNA secondary structures in two intron families including mitochondrial‐, chloroplast‐ and nuclear‐encoded members.

  1983cited by this paper
• A rapid DNA isolation procedure for small quantities of fresh leaf tissue

  1980cited by this paper

• Comprehensive analysis of the first complete mitogenome and plastome of a traditional Chinese medicine Viola diffusa

  2024cites this paper
• Recurrent evolutionary switches of mitochondrial cytochrome c maturation systems in Archaeplastida

  2024cites this paper
• Complete chloroplast genomes of Cerastium alpinum, C. arcticum and C. nigrescens: genome structures, comparative and phylogenetic analysis

  2023cites this paper
• Adaptive evolution of the enigmatic Takakia now facing climate change in Tibet.

  2023cites this paper
• Comparative analysis of mitochondrial genomes of two alpine medicinal plants of Gentiana (Gentianaceae)

  2023cites this paper
• Extensive RNA editing in tomato nuclear genes

  2022cites this paper
• New mitochondrial genomes of leptosporangiate ferns allow modeling the mitogenomic inflation syndrome across all land plant lineages

  2022cites this paper
• An empirical analysis of mtSSRs: could microsatellite distribution patterns explain the evolution of mitogenomes in plants?

  2021cites this paper
• The mitochondrial genomes of bryophytes

  2021influential citation
• The complete mitochondrial genome of Cycas debaoensis revealed unexpected static evolution in gymnosperm species

  2021cites this paper
• Gauging the trends of pseudogenes in plants

  2021cites this paper
• Haslea silbo, A Novel Cosmopolitan Species of Blue Diatoms

  2021cites this paper
• Plastid genomes and phylogenomics of liverworts (Marchantiophyta): conserved genome structure but highest relative plastid substitution rate in land plants.

  2021cites this paper
• A functional twintron, ‘zombie’ twintrons and a hypermobile group II intron invading itself in plant mitochondria

  2020cites this paper
• Recent literature on bryophytes — 123(4)

  2020cites this paper
• Plant organellar RNA editing: what 30 years of research has revealed.

  2020cites this paper
• The complete mitogenome sequence of the coral lily (Lilium pumilum) and the Lanzhou lily (Lilium davidii) in China

  2020cites this paper
• Phylogeny of Orthotrichum s.l. and Ulota s.l. (Orthotrichaceae, Bryophyta): Insights into stomatal evolution

  2020cites this paper
• Extensive variation in nucleotide substitution rate and gene/intron loss in mitochondrial genomes of Pelargonium.

  2020cites this paper
• Variation in protein gene and intron content among land plant mitogenomes.

  2020cites this paper
• Maternal Inheritance of U’s Triangle and Evolutionary Process of Brassica Mitochondrial Genomes

  2020cites this paper
• Why so Complex? The Intricacy of Genome Structure and Gene Expression, Associated with Angiosperm Mitochondria, May Relate to the Regulation of Embryo Quiescence or Dormancy—Intrinsic Blocks to Early Plant Life

  2020cites this paper
• The draft mitochondrial genome of Magnolia biondii and mitochondrial phylogenomics of angiosperms

  2020cites this paper
• Mitochondria in parasitic plants.

  2020cites this paper
• Interchangeable parts: The evolutionarily dynamic tRNA population in plant mitochondria.

  2020cites this paper
• Evolutionary Trends in the Mitochondrial Genome of Archaeplastida: How Does the GC Bias Affect the Transition from Water to Land?

  2020cites this paper
• Extensive shifts from cis to trans splicing of gymnosperm mitochondrial introns.

  2020cites this paper
• Mitochondrial genomes of the early land plant lineage liverworts (Marchantiophyta): conserved genome structure, and ongoing low frequency recombination

  2019cites this paper
• Organellomic data sets confirm a cryptic consensus on (unrooted) land-plant relationships and provide new insights into bryophyte molecular evolution.

  2019cites this paper
• Mitochondrial genome from Andreaea wangiana reveals structural conservatism and a trend of size reduction in mosses

  2019cites this paper
• The mitochondrial genomes of Bazzania tridens and Riccardia planiflora further confirm conservative evolution of mitogenomes in liverworts

  2019cites this paper
• The Amount of RNA Editing Sites in Liverwort Organellar Genes Is Correlated with GC Content and Nuclear PPR Protein Diversity

  2019cites this paper
• Towards a plant model for enigmatic U-to-C RNA editing: the organelle genomes, transcriptomes, editomes and candidate RNA editing factors in the hornwort Anthoceros agrestis.

  2019cites this paper
• Complete sequence of kenaf (Hibiscus cannabinus) mitochondrial genome and comparative analysis with the mitochondrial genomes of other plants

  2018cites this paper
• Complete mitochondrial genome sequence of the “copper moss” Mielichhoferia elongata reveals independent nad7 gene functionality loss

  2018influential citation
• Genome-wide organellar analyses from the hornwort Leiosporoceros dussii show low frequency of RNA editing

  2018cites this paper
• The complete mitochondrial genome of the early flowering plant Nymphaea colorata is highly repetitive with low recombination

  2018cites this paper
• Assembly and comparative analysis of the complete mitochondrial genome sequence of Sophora japonica ‘JinhuaiJ2’

  2018cites this paper
• Correction: Complete mitochondrial genome sequence of the “copper moss” Mielichhoferia elongata reveals independent nad7 gene functionality loss

  2018cites this paper
• Complete mitochondrial genome sequence of Anthoceros angustus: conservative evolution of the mitogenomes in hornworts

  2018cites this paper
• Complete mitochondrial genomes from the ferns Ophioglossum californicum and Psilotum nudum are highly repetitive with the largest organellar introns.

  2017cites this paper
• The extraordinary variation of the organellar genomes of the Aneura pinguis revealed advanced cryptic speciation of the early land plants

  2017cites this paper
• Cyanobacteria in Terrestrial Symbiotic Systems

  2017cites this paper
• Comparative Analysis of Four Calypogeia Species Revealed Unexpected Change in Evolutionarily-Stable Liverwort Mitogenomes

  2017cites this paper
• RNA Editing and Its Molecular Mechanism in Plant Organelles

  2016cites this paper
• Ginkgo and Welwitschia Mitogenomes Reveal Extreme Contrasts in Gymnosperm Mitochondrial Evolution.

  2016cites this paper
• Monilophyte mitochondrial rps1 genes carry a unique group II intron that likely originated from an ancient paralog in rpl2

  2016cites this paper
• In silico study in mitochondrial and chloroplast genomes of plants

  2016cites this paper
• Organellar phylogenomics of an emerging model system: Sphagnum (peatmoss).

  2016cites this paper
• Potential of Microsatellites Markers for the Genetic Analysis of Bryophytes

  2016cites this paper
• Chloroplast and Mitochondrial Genomes of Tomato

  2016cites this paper
• The genome of the model species Anthoceros agrestis

  2016cites this paper
• Comparative evolutionary analysis of organellar genomic diversity in green plants

  2016cites this paper
• Simple sequence repeats in bryophyte mitochondrial genomes

  2016cites this paper
• Reverse U-to-C editing exceeds C-to-U RNA editing in some ferns – a monilophyte-wide comparison of chloroplast and mitochondrial RNA editing suggests independent evolution of the two processes in both organelles

  2016cites this paper
• Rapid evolutionary divergence of Gossypium barbadense and G. hirsutum mitochondrial genomes

  2015cites this paper
• Evolution of the KCS gene family in plants: the history of gene duplication, sub/neofunctionalization and redundancy

  2015cites this paper
• Variable Frequency of Plastid RNA Editing among Ferns and Repeated Loss of Uridine-to-Cytidine Editing from Vascular Plants

  2015cites this paper
• Organellar genomes of the four-toothed moss, Tetraphis pellucida

  2014cites this paper
• A Systematic Revision of North American Tolypella A. Braun (Charophyceae, Charophyta)

  2014cites this paper
• Comparative analysis of 11 Brassicales mitochondrial genomes and the mitochondrial transcriptome of Brassica oleracea.

  2014cites this paper
• 350 my of mitochondrial genome stasis in mosses, an early land plant lineage.

  2014influential citation
• Loss/retention and evolution of NBS-encoding genes upon whole genome triplication of Brassica rapa.

  2014cites this paper
• Architecture and evolution of a minute plant genome

  2013cites this paper
• Evolution of Plant Mitochondrial Intron-Encoded Maturases: Frequent Lineage-Specific Loss and Recurrent Intracellular Transfer to the Nucleus

  2013influential citation
• Evolution of mitochondrial gene content: loss of genes, tRNAs and introns between Gossypium harknessii and other plants

  2013cites this paper
• Tracing the Evolution of Streptophyte Algae and Their Mitochondrial Genome

  2013cites this paper
• Plant mitochondrial genome peculiarities evolving in the earliest vascular plant lineages

  2013cites this paper
• Conservative and Dynamic Evolution of Mitochondrial Genomes in Early Land Plants

  2012cites this paper
• The mitochondrial genome of Malus domestica and the import-driven hypothesis of mitochondrial genome expansion in seed plants.

  2012cites this paper
• Sequenced Mitochondrial Genomes of Bryophytes

  2012cites this paper
• A Primary Survey on Bryophyte Species Reveals Two Novel Classes of Nucleotide-Binding Site (NBS) Genes

  2012cites this paper
• Seed Plant Mitochondrial Genomes: Complexity Evolving

  2012cites this paper
• Exclusive conservation of mitochondrial group II intron nad4i548 among liverworts and its use for phylogenetic studies in this ancient plant clade.

  2012cites this paper
• Plant Mitochondrial Genome Diversity: The Genomics Revolution

  2012cites this paper
• The Mitochondrial Genome of the Lycophyte Huperzia squarrosa: The Most Archaic Form in Vascular Plants

  2012influential citation
• Comparison of Mitochondrial Genomes of Bryophytes

  2012cites this paper
• The Organelle Genomes of Hassawi Rice (Oryza sativa L.) and Its Hybrid in Saudi Arabia: Genome Variation, Rearrangement, and Origins

  2012cites this paper
• Making next-generation sequencing work for you: approaches and practical considerations for marker development and phylogenetics

  2012cites this paper
• Deep sequencing of Ptilidium (Ptilidiaceae) suggests evolutionary stasis in liverwort plastid genome structure

  2011cites this paper
• Mitochondrial Genome Evolution in the Plant Lineage

  2011influential citation
• An efficient procedure for plant organellar genome assembly, based on whole genome data from the 454 GS FLX sequencing platform

  2011cites this paper
• Amino Acid Compositional Shifts During Streptophyte Transitions to Terrestrial Habitats

  2011cites this paper
• The Mitochondrial Genomes of the Early Land Plants Treubia lacunosa and Anomodon rugelii: Dynamic and Conservative Evolution

  2011influential citation
• Extreme RNA Editing in Coding Islands and Abundant Microsatellites in Repeat Sequences of Selaginella moellendorffii Mitochondria: The Root of Frequent Plant mtDNA Recombination in Early Tracheophytes

  2011cites this paper
• Complex mutation and weak selection together determined the codon usage bias in bryophyte mitochondrial genomes.

  2010cites this paper
• Exploring non-coding mitochondrial DNA sequences in bryophyte molecular evolution

  2010cites this paper
• Lineage-specific group II intron gains and losses of the mitochondrial rps3 gene in gymnosperms.

  2010influential citation