Stochasticity of gene expression as a motor of epigenetics in bacteria: from individual to collective behaviors.

No abstract is available for this paper.

• Publication year

  2017

• Venue

  Research in Microbiology

• Publication date

  2017-07-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1016/j.resmic.2017.03.009PMID 28427910
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• A long-term epigenetic memory switch controls bacterial virulence bimodality

  2017cited by this paper
• Distinguishing between resistance, tolerance and persistence to antibiotic treatment

  2016cited by this paper
• What's Luck Got to Do with It: Single Cells, Multiple Fates, and Biological Nondeterminism.

  2016cited by this paper
• Defining heterogeneity within bacterial populations via single cell approaches

  2016cited by this paper
• Inhibitory interactions promote frequent bistability among competing bacteria

  2016cited by this paper
• Dynamics of epigenetic regulation at the single-cell level

  2016cited by this paper
• Stochastic activation of a DNA damage response causes cell-to-cell mutation rate variation

  2016cited by this paper
• REVIEW: PART OF A SPECIAL ISSUE ON DEVELOPMENTAL ROBUSTNESS AND SPECIES DIVERSITY Developmental mechanisms underlying variable, invariant and plastic phenotypes

  2016cited by this paper
• Figures and figure supplements Expression noise facilitates the evolution of gene regulation

  2015influential reference
• Quorum sensing triggers the stochastic escape of individual cells from Pseudomonas putida biofilms

  2015cited by this paper
• Pathogen Cell-to-Cell Variability Drives Heterogeneity in Host Immune Responses.

  2015cited by this paper
• Stochastic Switching of Cell Fate in Microbes.

  2015cited by this paper
• Selection on noise constrains variation in a eukaryotic promoter

  2015cited by this paper
• Phenotypic Diversity as a Mechanism to Exit Cellular Dormancy.

  2015cited by this paper
• A functional perspective on phenotypic heterogeneity in microorganisms

  2015cited by this paper
• Gene Regulation by H-NS as a Function of Growth Conditions Depends on Chromosomal Position in Escherichia coli

  2015cited by this paper
• Transcript level and sequence determinants of protein abundance and noise in Escherichia coli

  2014cited by this paper
• Cheating by type 3 secretion system-negative Pseudomonas aeruginosa during pulmonary infection

  2014cited by this paper
• Memory and Fitness Optimization of Bacteria under Fluctuating Environments

  2014cited by this paper
• Expression noise facilitates the evolution of gene regulation

  2014cited by this paper
• Mechanism of transcriptional bursting in bacteria.

  2014cited by this paper
• Macromolecular networks and intelligence in microorganisms

  2014cited by this paper
• Bacterial solutions to multicellularity: a tale of biofilms, filaments and fruiting bodies

  2014cited by this paper
• Dynamic Persistence of Antibiotic-Stressed Mycobacteria

  2013cited by this paper
• Memory and Modularity in Cell-Fate Decision Making

  2013influential reference
• Point-cycle bistability and stochasticity in a regulatory circuit for Bacillus subtilis competence.

  2013cited by this paper
• Stabilization of cooperative virulence by the expression of an avirulent phenotype

  2013influential reference
• Coupling Between Noise and Plasticity in E. coli

  2013cited by this paper
• Measuring mRNA copy number in individual Escherichia coli cells using single-molecule fluorescent in situ hybridization

  2013cited by this paper
• Microbial Scout Hypothesis, Stochastic Exit from Dormancy, and the Nature of Slow Growers

  2012cited by this paper
• Interplay between gene expression noise and regulatory network architecture.

  2012cited by this paper
• Correction: A Genome-Wide Analysis of Promoter-Mediated Phenotypic Noise in Escherichia coli

  2012cited by this paper
• A Genome-Wide Analysis of Promoter-Mediated Phenotypic Noise in Escherichia coli

  2012influential reference
• Regulatory consequences of gene translocation in bacteria

  2012cited by this paper
• GENERAL PROPERTIES OF THE TRANSCRIPTIONAL TIME-SERIES IN ESCHERICHIA COLI

  2011cited by this paper
• Central dogma at the single-molecule level in living cells

  2011cited by this paper
• The Cost of Virulence: Retarded Growth of Salmonella Typhimurium Cells Expressing Type III Secretion System 1

  2011cited by this paper
• Stochastic Pulse Regulation in Bacterial Stress Response

  2011cited by this paper
• Extracellular DNA in Biofilms

  2011cited by this paper
• Expression of the Type 1 Pneumococcal Pilus Is Bistable and Negatively Regulated by the Structural Component RrgA

  2011cited by this paper
• Aging in bacteria, immortality or not-a critical review.

  2010cited by this paper
• Regulation of phenotypic variability by a threshold-based mechanism underlies bacterial persistence

  2010cited by this paper
• Conflict between Noise and Plasticity in Yeast

  2010cited by this paper
• Regulatory mechanisms of exoribonuclease PNPase and regulatory small RNA on T3SS of Dickeya dadantii.

  2010cited by this paper
• Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

  2010influential reference
• Functional roles for noise in genetic circuits

  2010cited by this paper
• Fundamental limits on the suppression of molecular fluctuations

  2010cited by this paper
• Promoter architecture and the evolvability of gene expression

  2009cited by this paper
• Microbial awakenings

  2009cited by this paper
• A synchronized quorum of genetic clocks

  2009cited by this paper
• A Stochastic Single-Molecule Event Triggers Phenotype Switching of a Bacterial Cell

  2008cited by this paper
• Single-molecule approach to molecular biology in living bacterial cells.

  2008cited by this paper
• Supporting Online Material Materials and Methods Figs. S1 to S8 Tables S1 to S4 References a Stochastic Single-molecule Event Triggers Phenotype Switching of a Bacterial Cell

  2008cited by this paper
• Induction and relaxation dynamics of the regulatory network controlling the type III secretion system encoded within Salmonella pathogenicity island 1.

  2008cited by this paper
• Asymmetric segregation of protein aggregates is associated with cellular aging and rejuvenation

  2008cited by this paper
• Self-destructive cooperation mediated by phenotypic noise

  2008cited by this paper
• Network motifs: theory and experimental approaches

  2007cited by this paper
• Phenotypic variation in bacteria: the role of feedback regulation

  2006cited by this paper
• An excitable gene regulatory circuit induces transient cellular differentiation

  2006cited by this paper
• Transcriptional regulation by the numbers: models.

  2005cited by this paper
• Stochasticity in gene expression: from theories to phenotypes

  2005cited by this paper
• Biofilm diversity as a test of the insurance hypothesis.

  2005cited by this paper
• Noise in Gene Expression: Origins, Consequences, and Control

  2005cited by this paper
• Bacterial Persistence as a Phenotypic Switch

  2004cited by this paper
• Transcriptional Regulation by the Numbers 1: Models

  2004cited by this paper
• Phase and Antigenic Variation in Bacteria

  2004cited by this paper
• Self-generated diversity produces "insurance effects" in biofilm communities.

  2004cited by this paper
• Regulation of noise in the expression of a single gene

  2002cited by this paper
• Stochastic Gene Expression in a Single Cell

  2002cited by this paper
• Autoamplification of a Two-Component Regulatory System Results in “Learning” Behavior

  2001cited by this paper
• A synthetic oscillatory network of transcriptional regulators

  2000cited by this paper
• On the Relation Between the Logical Structure of Systems and Their Ability to Generate Multiple Steady States or Sustained Oscillations

  1981cited by this paper
• A model for the statistical fluctuations of protein numbers in a microbial population.

  1978cited by this paper
• Stochastic model of linear, continuous protein synthesis in bacterial populations.

  1977cited by this paper
• Non-genetic individuality: chance in the single cell

  1976cited by this paper
• ENZYME INDUCTION AS AN ALL-OR-NONE PHENOMENON.

  1957cited by this paper
• Induced synthesis of enzymes in bacteria analyzed at the cellular level.

  1953cited by this paper
• The FASEB Journal • FJ Express Full-Length Article Many expressed genes in bacteria and yeast are transcribed only once per cell cycle

  year unknowncited by this paper

• Unveiling hidden variables in stressed bacteria.

  2026cites this paper
• Bacterial chromatin remodeling associated with transcription-induced domains at pathogenicity Islands

  2025cites this paper
• Bridging phage production models and practical applications to control antibiotic-resistant bacteria.

  2025cites this paper
• The macrophage-bacterium mismatch in persister formation.

  2024cites this paper
• Chronic arsenic exposure induces malignant transformation of human HaCaT cells through both deterministic and stochastic changes in transcriptome expression.

  2024cites this paper
• Peeling off the layers from microbial dark matter (MDM): recent advances, future challenges, and opportunities

  2024cites this paper
• Spatially localised expression of the glutamate decarboxylase gadB in Escherichia coli O157:H7 microcolonies in hydrogel matrices

  2023cites this paper
• RsaL-driven negative regulation promotes heterogeneity in Pseudomonas aeruginosa quorum sensing

  2023cites this paper
• Spatially localized expression of glutamate decarboxylase gadB in Escherichia coli O157:H7 microcolonies in hydrogel matrix

  2023cites this paper
• Design and validation of a dual-fluorescence reporter system to monitor bacterial gene expression in the gut environment

  2023cites this paper
• Genetic, physiological, and cellular heterogeneities of bacterial pathogens in food matrices: Consequences for food safety.

  2022cites this paper
• Contribution of omics to biopreservation: Toward food microbiome engineering

  2022cites this paper
• Xenorhabdus nematophila bacteria shift from mutualistic to virulent Lrp-dependent phenotypes within the receptacles of Steinernema carpocapsae insect-infective stage nematodes.

  2020cites this paper
• Challenges of unculturable bacteria: environmental perspectives

  2020cites this paper
• For the Greater (Bacterial) Good: Heterogeneous Expression of Energetically Costly Virulence Factors

  2020cites this paper
• Rate-limiting Steps in Transcription Initiation are Key Regulatory Mechanisms of Escherichia coli Gene Expression Dynamics

  2020cites this paper
• The route to transcription initiation determines the mode of transcriptional bursting in E. coli

  2020cites this paper
• Bacillus subtilis Nucleoid-Associated Protein YlxR Is Involved in Bimodal Expression of the Fructoselysine Utilization Operon (frlBONMD-yurJ) Promoter

  2020cites this paper
• Evolutionary Stability of Salmonella Combat with the Gut Microbiota: How the Environment Fosters Heterogeneity in Exploitative and Interference Competition.

  2019cites this paper
• One for All, but Not All for One: Social Behavior during Bacterial Diseases.

  2019cites this paper
• Tipping-point analysis uncovers critical transition signals from gene expression profiles

  2019cites this paper
• Transcriptional variation in malaria parasites: why and how.

  2019cites this paper
• Phenotypic Heterogeneity in Bacterial Quorum Sensing Systems.

  2019cites this paper
• Noise in bacterial gene expression.

  2019cites this paper
• Nectar yeasts: a natural microcosm for ecology

  2018cites this paper
• Buffering and Amplifying Transcriptional Noise During Cell Fate Specification

  2018cites this paper
• Bacterial-Chromatin Structural Proteins Regulate the Bimodal Expression of the Locus of Enterocyte Effacement (LEE) Pathogenicity Island in Enteropathogenic Escherichia coli

  2017cites this paper