Affinity modification in a proteomic study of DNA repair ensembles

No abstract is available for this paper.

• Publication year

  2011

• Venue

  Russian journal of bioorganic chemistry

• Publication date

  2011-02-16

• Fields of study

  Biology, Medicine, Chemistry

• Identifiers
  DOI 10.1134/S1068162011010109PMID 21460885
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

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  1985cited by this paper
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  1985cited by this paper
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