Genetic and physical mapping of Melampsora rust resistance genes in Populus and characterization of linkage disequilibrium and flanking genomic sequence.

No abstract is available for this paper.

• Publication year

  2004

• Venue

  New Phytologist

• Publication date

  2004-10-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1111/J.1469-8137.2004.01161.XPMID 33873470
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

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  2006cited by this paper
• Annotation of a 95-kb Populus deltoides genomic sequence reveals a disease resistance gene cluster and novel class I and class II transposable elements

  2004cited by this paper
• Large-scale heterospecific segregation distortion in Populus revealed by a dense genetic map

  2004cited by this paper
• Characterization of microsatellites revealed by genomic sequencing of Populus trichocarpa

  2004cited by this paper
• Pathogenic variation in Melampsora medusae leaf rust of poplars

  2004cited by this paper
• Plant innate immunity - direct and indirect recognition of general and specific pathogen-associated molecules.

  2004cited by this paper
• Poplar genomics is getting popular: the impact of the poplar genome project on tree research.

  2004cited by this paper
• Maximum-likelihood models for mapping genetic markers showing segregation distortion. 2. F2 populations

  2004cited by this paper
• Maximum-likelihood models for mapping genetic markers showing segregation distortion. 1. Backcross populations

  2004cited by this paper
• Genome-Wide Analysis of NBS-LRR–Encoding Genes in Arabidopsis Online version contains Web-only data. Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.009308.

  2003cited by this paper
• Osmotin and thaumatin from grape: a putative general defense mechanism against pathogenic fungi.

  2003cited by this paper
• Molecular markers closely linked to fusarium resistance genes in chickpea show significant alignments to pathogenesis-related genes located on Arabidopsis chromosomes 1 and 5

  2003cited by this paper
• Transgenic Tobacco Plants Constitutively Overexpressing a Rice Thaumatin-like Protein (PR-5) Show Enhanced Resistance to Alternaria alternata

  2003cited by this paper
• Understanding the functions of plant disease resistance proteins.

  2003cited by this paper
• Power of genome-wide linkage disequilibrium testing by using microsatellite markers

  2003cited by this paper
• Plant-based heterologous expression of Mal d 2, a thaumatin-like protein and allergen of apple (Malus domestica), and its characterization as an antifungal protein.

  2003cited by this paper
• Haplotype blocks and linkage disequilibrium in the human genome

  2003cited by this paper
• Comparative sequence analysis between orthologous regions of the Arabidopsis and Populus genomes reveals substantial synteny and microcollinearity

  2003cited by this paper
• Patterns of linkage disequilibrium in the human genome

  2002cited by this paper
• PCR Sampling of disease resistance-like sequences from a disease resistance gene cluster in soybean

  2002cited by this paper
• Epigenetic variation in Arabidopsis disease resistance.

  2002cited by this paper
• Engineering Pathogen Resistance in Crop Plants

  2002cited by this paper
• Linkage disequilibrium: what history has to tell us.

  2002cited by this paper
• Whole-Genome Shotgun Assembly and Analysis of the Genome of Fugu rubripes

  2002cited by this paper
• Linkage disequilibrium between microsatellite markers extends beyond 1 cM on chromosome 20 in Finns.

  2001cited by this paper
• The value of isolated populations

  2001cited by this paper
• Chromosomal rearrangements and speciation.

  2001cited by this paper
• Fine Mapping and Identification of Nucleotide Binding Site/Leucine-Rich Repeat Sequences at the MER Locus in Populus deltoides 'S9-2'.

  2001cited by this paper
• Suppressed recombination around the MXC3 locus, a major gene for resistance to poplar leaf rust

  2001cited by this paper
• Dense genetic linkage maps of three Populus species (Populus deltoides, P. nigra and P. trichocarpa) based on AFLP and microsatellite markers.

  2001cited by this paper
• Nonhost resistance to Phytophthora: novel prospects for a classical problem.

  2001cited by this paper
• The InterPro database, an integrated documentation resource for protein families, domains and functional sites

  2001cited by this paper
• A genetic map in the Mimulus guttatus species complex reveals transmission ratio distortion due to heterospecific interactions.

  2001cited by this paper
• Antifungal Proteins

  2001cited by this paper
• Strategies for the systematic sequencing of complex genomes

  2001cited by this paper
• Nonhost resistance and nonspecific plant defenses.

  2000cited by this paper
• The genetic architecture of resistance.

  2000cited by this paper
• Host effect on genetic variation of Marssonina brunnea pathogenic to poplars

  2000cited by this paper
• Structure, function and evolution of plant disease resistance genes.

  2000cited by this paper
• The families of pathogenesis-related proteins, their activities, and comparative analysis of PR-1 type proteins

  1999cited by this paper
• Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide‐binding superfamily

  1999cited by this paper
• Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide-binding superfamily.

  1999cited by this paper
• Prospects for whole-genome linkage disequilibrium mapping of common disease genes

  1999cited by this paper
• Genetic variation of the riparian pioneer tree species Populus nigra. II. Variation in susceptibility to the foliar rust Melampsora larici-populina

  1999cited by this paper
• Advances in Quantitative Trait Locus Mapping

  1999cited by this paper
• Consed: a graphical tool for sequence finishing.

  1998influential reference
• The Major Resistance Gene Cluster in Lettuce Is Highly Duplicated and Spans Several Megabases

  1998cited by this paper
• Combining evidence using p-values: application to sequence homology searches

  1998cited by this paper
• Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process.

  1998cited by this paper
• The Tomato Cf-5 Disease Resistance Gene and Six Homologs Show Pronounced Allelic Variation in Leucine-Rich Repeat Copy Number

  1998cited by this paper
• A Single Gene Cluster Controls Incompatibility and Partial Resistance to Various Melampsora larici-populina Races in Hybrid Poplars.

  1998cited by this paper
• Prediction of transmembrane alpha-helices in prokaryotic membrane proteins: the dense alignment surface method.

  1997cited by this paper
• Prediction of complete gene structures in human genomic DNA.

  1997cited by this paper
• Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

  1997cited by this paper
• The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

  1997cited by this paper
• Genetics of hybrid sterility and hybrid breakdown in an intersubspecific rice (Oryza sativa L.) population.

  1997cited by this paper
• Identification of AFLP molecular markers for resistance against Melampsora larici-populina in Populus

  1996cited by this paper
• Detection of a major gene for resistance to fusiform rust disease in loblolly pine by genomic mapping.

  1996cited by this paper
• Molecular genetics of rust resistance in poplars (Melampsora larici-populina Kleb/Populus sp.) by bulked segregant analysis in a 2 x 2 factorial mating design.

  1996cited by this paper
• Poplar diseases, consequences on growth and wood quality

  1996cited by this paper
• A major gene for resistance to Melampsora medusae f. sp. deltoidae in a hybrid poplar pedigree

  1996cited by this paper
• Quantitative trait loci conferring resistance in hybrid poplar to Septoriapopulicola, the cause of leaf spot

  1996cited by this paper
• Testing for linkage disequilibrium in genotypic data using the Expectation-Maximization algorithm

  1996cited by this paper
• Random amplified polymorphic DNA markers tightly linked to a gene for resistance to white pine blister rust in sugar pine.

  1995cited by this paper
• Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population.

  1995cited by this paper
• A Receptor Kinase-Like Protein Encoded by the Rice Disease Resistance Gene, Xa21

  1995cited by this paper
• Intra- and interspecific inheritance of some components of the resistance to leaf rust (Melampsora larici-populina Kleb.) in poplars

  1994cited by this paper
• Mortality among hybrid poplar clones in a stool bed following leaf rust caused by Melampsoramedusae f.sp. deltoidae

  1994cited by this paper
• Variability in the genus Populus in sensitivity to Melampsora rusts.

  1992cited by this paper
• Limitations of molecular-marker-aided selection in forest tree breeding

  1992cited by this paper
• Performing the exact test of Hardy-Weinberg proportion for multiple alleles.

  1992cited by this paper
• Present status of genetics of rust resistance in flax

  1991cited by this paper
• Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations.

  1991cited by this paper
• Variation in rust virulence and host resistance of Melampsora on black cottonwood

  1985cited by this paper
• Natural intersectional hybridization between North American species of Populus (Salicaceae) in sections Aigeiros and Tacamahaca. III. Paleobotany and evolution

  1984cited by this paper
• Principles of population genetics

  1981cited by this paper
• Genetic Variation and Heritability of Melampsora Leaf Rust Resistance in Eastern Cottonwood

  1975cited by this paper
• Genetics of Hybrid Sterility and Hybrid Breakdown in an Intersubspecific Rice ( O y a sativa L.) Population

  year unknowncited by this paper

• Stomatal traits covary with leaf mycobiome diversity and composition

  2025cites this paper
• Advanced Breeding for Biotic Stress Resistance in Poplar

  2022cites this paper
• Toward the identification of molecular markers associated with phytochemical traits in the Iranian sumac (Rhus coriaria L.) population

  2021cites this paper
• The relationship between structural properties and activation of RAW264.7 and natural killer (NK) cells by sulfated polysaccharides extracted from Astragalus membranaceus roots

  2020cites this paper
• CRISPR/Cas9 Gene Editing: An Unexplored Frontier for Forest Pathology

  2020cites this paper
• Host plant genetic control of associated fungal and insect species in a Populus hybrid cross

  2020cites this paper
• Potential of Genome-Wide Association Studies and Genomic Selection to Improve Productivity and Quality of Commercial Timber Species in Tropical Rainforest, a Case Study of Shorea platyclados

  2020cites this paper
• Identification of Genes Underlying the Resistance to Melampsora larici-populina in an R Gene Supercluster of the Populus deltoides Genome.

  2020cites this paper
• Application of Genomics to Plant Breeding

  2016cites this paper
• The Populus Genome Initiative

  2016influential citation
• Natural infectious behavior of the urediniospores of Melampsora larici-populina on poplar leaves

  2015cites this paper
• Patterns of genetic diversity and differentiation in resistance gene clusters of two hybridizing European Populus species

  2015influential citation
• DNA Markers in Tree Improvement of Tropical Plantation Species

  2014cites this paper
• Association mapping for morphological and physiological traits in Populus simonii

  2014cites this paper
• Association mapping for resin yield in Pinus roxburghii Sarg. using microsatellite markers

  2014cites this paper
• Conservation genomics

  2014cites this paper
• Melampsora larici-populina, the main rust pathogen, causes loss in biomass production of black cottonwood plantations in the south of China

  2013cites this paper
• Association Analysis Identifies Melampsora ×columbiana Poplar Leaf Rust Resistance SNPs

  2013cites this paper
• Short rotation Populus: a bibliography of North American literature, 1989-2011

  2013cites this paper
• Association Mapping For Drought Tolerance In Wheat (Triticum Aestivum L.)

  2013cites this paper
• Architecture génétique des caractères cibles pour la culture du peuplier en taillis à courte rotation

  2013cites this paper
• Evaluation of Ceiba Pentandra for stem dieback disease resistance and characterization by molecular markers

  2013cites this paper
• The obscure events contributing to the evolution of an incipient sex chromosome in Populus: a retrospective working hypothesis

  2012cites this paper
• High-density genetic linkage maps with over 2,400 sequence-anchored DArT markers for genetic dissection in an F2 pseudo-backcross of Eucalyptus grandis × E. urophylla

  2012cites this paper
• 3 Association Mapping in Plant Genomes

  2012cites this paper
• Identification of quantitative trait loci and candidate genes for cadmium tolerance in Populus.

  2012cites this paper
• Association Mapping in Plant Genomes

  2012cites this paper
• Association mapping: A step forward to discovering new alleles for crop improvement

  2012cites this paper
• Identification of quantitative trait loci and candidate genes for c admium tolerance in Populus

  2012cites this paper
• Qualitative and quantitative resistances to leaf rust finely mapped within two nucleotide-binding site leucine-rich repeat (NBS-LRR)-rich genomic regions of chromosome 19 in poplar.

  2011cites this paper
• Identification of quantitative trait loci affecting ectomycorrhizal symbiosis in an interspecific F1 poplar cross and differential expression of genes in ectomycorrhizas of the two parents: Populus deltoides and Populus trichocarpa

  2011cites this paper
• Genome-wide analysis of eukaryote thaumatin-like proteins (TLPs) with an emphasis on poplar

  2011cites this paper
• Caractérisation de R1 et Rus : deux loci de résistance à la rouille foliaire sur le chromosome 19 du peuplier

  2011cites this paper
• The Populus genome sequence.

  2011cites this paper
• A genomic map enriched for markers linked to Avr1 in Cronartium quercuum f.sp. fusiforme.

  2011cites this paper
• Genetic mapping of linkage group XIX and identification of sex-linked SSR markers in a Populus tremula × Populus tremuloides cross

  2011cites this paper
• QTL mapping of resistance to leaf rust in Salix

  2011cites this paper
• Genetic mapping of rust resistance loci in biomass willow

  2011cites this paper
• Innate immunity: has poplar made its BED?

  2011cites this paper
• Découverte et caractérisation des petites protéines sécrétées chez les rouilles foliaires du peuplier (melampsora spp.)

  2010cites this paper
• High-density linkage mapping and evolution of paralogs and orthologs in Salix and Populus

  2010cites this paper
• Exploratory analysis of pathogen resistance responsible genetic elements in two eudicots from whole genome sequence

  2010cites this paper
• The Populus Genome and Comparative Genomics

  2010cites this paper
• Nucleotide Polymorphism, Linkage Disequilibrium and Complex Trait Dissection in Populus

  2010cites this paper
• [A review of the genomic and gene cloning studies in trees].

  2010cites this paper
• Fine mapping, physical mapping and development of diagnostic markers for the Rrs2 scald resistance gene in barley

  2009cites this paper
• Prokaryotic expression analysis of an NBS-type PtDRG01 gene isolated from Populus tomentosa Carr.

  2009cites this paper
• The genetic regulation of gene expression, transcriptional networks, and leaf development in the perennial model plant Populus

  2009cites this paper
• Poplar and Pathogen Interactions: Insights from Populus Genome-Wide Analyses of Resistance and Defense Gene Families and Gene Expression Profiling

  2009cites this paper
• Genetic linkage mapping in aspen (Populus tremula L. and Populus tremuloides Michx.)

  2009influential citation
• Exploration de la diversité des résistances génétiques à la maladie sud-américaine des feuilles de l'hévéa (Microcyclus ulei) par cartographie et génétique d'association au sein de populations naturelles

  2008cites this paper
• Biotechnology and the domestication of forest trees Wout Boerjan

  2008cites this paper
• Genome-wide identification of NBS resistance genes in Populus trichocarpa

  2008cites this paper
• [Research progress of single nucleotide polymorphisms in forest trees.].

  2008cites this paper
• Métodos de avaliação da ferrugem do álamo e eficiência de fungicidas no seu controle

  2008cites this paper
• Estimating genetic flow between exotic and native poplar species in Québec

  2008cites this paper
• Characterization of resistance gene analogs with a nucleotide binding site isolated from a triploid white poplar.

  2008cites this paper
• Application of Association Mapping to Understanding the Genetic Diversity of Plant Germplasm Resources

  2008cites this paper
• Populus trichocarpa MONOPTEROS/AUXIN RESPONSE FACTOR5 ( ARF5 ) genes: comparative structure, sub-functionalization, and Populus - Arabidopsis microsynteny

  2007cites this paper
• Gene-assisted selection: applications of association genetics for forest tree breeding

  2007influential citation
• Transcript Profiling of Poplar Leaves upon Infection with Compatible and Incompatible Strains of the Foliar Rust Melampsora larici-populina1[W]

  2007cites this paper
• Poplar leaf rusts: model pathogens for a model tree

  2007cites this paper
• The transcriptional response of hybrid poplar (Populus trichocarpa x P. deltoides) to infection by Melampsora medusae leaf rust involves induction of flavonoid pathway genes leading to the accumulation of proanthocyanidins.

  2007cites this paper
• Populus: a model system for plant biology.

  2007cites this paper
• Population management: potential impacts of advances in genomics

  2007cites this paper
• Crop Platforms for cell wall biorefining : lignocellulose feedstocks

  2007cites this paper
• ISSR Marker and ITS Sequence Study of Melampsora Larici-populina

  2006cites this paper
• A framework for community and ecosystem genetics: from genes to ecosystems

  2006cites this paper
• A pioneer perspective on adaptation. Functional genomics of environmental adaptation in Populus: the 12th New Phytologist Symposium, Gatlinburg, TN, USA, October 2004.

  2005cites this paper
• Phenotypic variation in growth and biomass distribution for two advanced-generation pedigrees of hybrid poplar

  2005cites this paper
• Biotechnology and the domestication of forest trees.

  2005cites this paper
• Genetic architecture of qualitative and quantitative Melampsora larici-populina leaf rust resistance in hybrid poplar: genetic mapping and QTL detection.

  2005cites this paper
• Chapter Five – Molecular Biology and Biochemistry of Induced Insect Defense in Populus

  2005cites this paper
• Poplar genomics comes of age.

  2004cites this paper
• Comparative sequence analysis between orthologous regions of the Arabidopsis and Populus genomes reveals substantial synteny and microcollinearity

  2003cites this paper