Computing Algebraic Functions with Biochemical Reaction Networks

No abstract is available for this paper.

• Publication year

  2009

• Venue

  Artificial Life

• Publication date

  Unknown publication date

• Fields of study

  Biology, Mathematics, Computer Science, Medicine

• Identifiers
  DOI 10.1162/artl.2009.15.1.15101PMID 18855568
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• In silico evolution of functional modules in biochemical networks.

  2006cited by this paper
• Mechanistic and modular approaches to modeling and inference of cellular regulatory networks

  2005cited by this paper
• Preliminary Studies on the In Silico Evolution of Biochemical Networks

  2004cited by this paper
• An autonomous molecular computer for logical control of gene expression

  2004cited by this paper
• Quantitative analysis of signaling networks.

  2004cited by this paper
• Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell.

  2003cited by this paper
• Motifs, modules and games in bacteria.

  2003cited by this paper
• Understanding complex signaling networks through models and metaphors.

  2003cited by this paper
• Bacterial chemotaxis and the question of gain

  2002cited by this paper
• Artificial Chemistries

  2002cited by this paper
• Systems Biology: A Brief Overview

  2002cited by this paper
• Artificial ChemistriesA Review

  2001cited by this paper
• Artificial Chemistries-A Review

  2001cited by this paper
• Receptor sensitivity in bacterial chemotaxis

  2001cited by this paper
• Control motifs for intracellular regulatory networks.

  2001cited by this paper
• The regulation of protein function by multisite phosphorylation--a 25 year update.

  2000cited by this paper
• Chemistry meets computing

  2000cited by this paper
• Emergent properties of networks of biological signaling pathways.

  1999cited by this paper
• Complexity in biological signaling systems.

  1999cited by this paper
• From molecular to modular cell biology

  1999cited by this paper
• TGF-beta signal transduction.

  1998cited by this paper
• Protein molecules as computational elements in living cells

  1995cited by this paper
• Protein molecules as computational elements in living cells

  1995cited by this paper
• Composite control of cell function: metabolic pathways behaving as single control units

  1995cited by this paper
• Computational functions in biochemical reaction networks.

  1994cited by this paper
• Intracellular signalling as a parallel distributed process.

  1990cited by this paper
• Applications of the theory of matrices

  1960cited by this paper

• Molecular Computation of Convolutional Neural Networks via Chemical Reaction Networks

  2025cites this paper
• Noise-robust training of artificial neural networks using chemical reaction networks

  2025cites this paper
• Input-to-state stability-based chemical reaction networks composition for molecular computations

  2025cites this paper
• NeuralCRNs: A Natural Implementation of Learning in Chemical Reaction Networks

  2024cites this paper
• Noise-robust chemical reaction networks training artificial neural networks

  2024cites this paper
• Maximum likelihood estimation of log-affine models using detailed-balanced reaction networks

  2024cites this paper
• Chemical mass-action systems as analog computers: Implementing arithmetic computations at specified speed

  2024cites this paper
• Design and Implementation of Pavlovian Associative Memory Based on DNA Neurons

  2024cites this paper
• Chemical relaxation oscillator designed to control molecular computation

  2023influential citation
• Automatic Implementation of Neural Networks Through Reaction Networks—Part I: Circuit Design and Convergence Analysis

  2023cites this paper
• Chemical Integration of ODEs using Idealized Abstract Solutions

  2023cites this paper
• Design and Simulation of a Multilayer Chemical Neural Network That Learns via Backpropagation

  2023influential citation
• A Theoretical Framework for Implementable Nucleic Acids Feedback Systems

  2023cites this paper
• On a model of online analog computation in the cell with absolute functional robustness: Algebraic characterization, function compiler and error control

  2023cites this paper
• Chemical Reaction Networks’ Programming for Solving Equations

  2022cites this paper
• Computing Arithmetic Functions Using Immobilised Enzymatic Reaction Networks

  2022cites this paper
• Reconfigurable Biochemical Circuit Synthesis from Biomachine Specification

  2022cites this paper
• Information Processing Using Networks of Chemical Oscillators

  2022cites this paper
• Catalyst-based biomolecular logic gates

  2022cites this paper
• Algebraic Biochemistry: A Framework for Analog Online Computation in Cells

  2022influential citation
• Design of Universal Chemical Relaxation Oscillator to Control Molecular Computation

  2022cites this paper
• Supervised Learning in a Multilayer, Nonlinear Chemical Neural Network

  2022cites this paper
• Computability, Complexity and Programming with Ordinary Differential Equations (Invited Talk)

  2020cites this paper
• On reaction network implementations of neural networks

  2020cites this paper
• PID and State Feedback Controllers Using DNA Strand Displacement Reactions

  2019influential citation
• Minimally Complex Nucleic Acid Feedback Control Systems for First Experimental Implementations

  2019cites this paper
• Biochemical Threshold Function Implementation with Zero-Order Ultrasensitivity

  2019influential citation
• E T ] 2 2 Ju n 20 19 A reaction network scheme which implements inference and learning for Hidden Markov Models

  2019cites this paper
• DNA Computing and Molecular Programming: 25th International Conference, DNA 25, Seattle, WA, USA, August 5–9, 2019, Proceedings

  2019influential citation
• A reaction network scheme for hidden Markov model parameter learning

  2019cites this paper
• Onnucleic acid feedback control systems

  2019cites this paper
• Robustness analysis of a nucleic acid controller for a dynamic biomolecular process using the structured singular value

  2019cites this paper
• CRN++: Molecular programming language

  2018cites this paper
• A reaction network scheme which implements the EM algorithm

  2018cites this paper
• Computing Mathematical Functions using DNA via Fractional Coding

  2018cites this paper
• Computing with biological switches and clocks

  2018cites this paper
• Control of neurite growth and guidance by an inhibitory cell-body signal

  2018cites this paper
• Designing Molecular Circuits for Approximate Maximum a Posteriori Demodulation of Concentration Modulated Signals

  2018cites this paper
• Synthesizing and tuning stochastic chemical reaction networks with specified behaviours

  2018cites this paper
• What Is Stress? A Systems Perspective.

  2018cites this paper
• Molecular Programming Language by

  2018influential citation
• Computing with chemical reaction networks: a tutorial

  2018cites this paper
• On the stability of nucleic acid feedback controllers

  2018cites this paper
• Design of an embedded inverse-feedforward biomolecular tracking controller for enzymatic reaction processes

  2017cites this paper
• Chemical reaction networks for computing logarithm

  2017cites this paper
• A Framework for Computing Discrete-Time Systems and Functions using DNA

  2017cites this paper
• Chemical Reaction Networks for Computing Polynomials.

  2017cites this paper
• Strong Turing Completeness of Continuous Chemical Reaction Networks and Compilation of Mixed Analog-Digital Programs

  2017cites this paper
• A Stochastic Molecular Scheme for an Artificial Cell to Infer Its Environment from Partial Observations

  2017cites this paper
• Programming discrete distributions with chemical reaction networks

  2016cites this paper
• Nondeterministic seedless oritatami systems and hardness of testing their equivalence

  2016cites this paper
• Programming dynamic nonlinear biomolecular devices using DNA strand displacement reactions

  2016cites this paper
• Proportional–Integral Degradation Control Allows Accurate Tracking of Biomolecular Concentrations With Fewer Chemical Reactions

  2016cites this paper
• Modeling and Modifying Response of Biochemical Processes for Biocomputing and Biosensing Signal Processing

  2016cites this paper
• Exploiting the dynamic properties of covalent modification cycle for the design of synthetic analog biomolecular circuitry

  2016cites this paper
• Biomolecular implementation of nonlinear system theoretic operators

  2016cites this paper
• Computing Polynomials by Chemical Reaction Networks

  2016cites this paper
• How plants manage food reserves at night: quantitative models and open questions

  2015cites this paper
• A Scheme for Molecular Computation of Maximum Likelihood Estimators for Log-Linear Models

  2015cites this paper
• Kinetic model for a threshold filter in an enzymatic system for bioanalytical and biocomputing applications.

  2014cites this paper
• Arabidopsis plants perform arithmetic division to prevent starvation at night

  2013cites this paper
• Modifying the rate of evolution using the learning process

  2013cites this paper
• Realistic parameters for simple models of the Belousov-Zhabotinsky reaction.

  2011cites this paper
• Zastosowanie algorytmów ewolucyjnych w obszarze badawczym Artificial Chemistry

  2011cites this paper
• Wizualizacja dynamiki roju cząstek z wykorzystaniem języka VRML

  2011cites this paper
• On chemical and self-healing networking protocols

  2011cites this paper
• Simulated Evolution of Mass Conserving Reaction Networks

  2008cites this paper
• Bionets Wp 2.2 – Paradigm Application and Mapping D2.2.8 Robustness and Evolvability of Artificial Polymer Chemistries in Online Evolution Document History

  year unknowncites this paper