Gene silencing in microalgae: mechanisms and biological roles.

No abstract is available for this paper.

• Publication year

  2015

• Venue

  Bioresource Technology

• Publication date

  2015-05-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1016/j.biortech.2014.10.119PMID 25466994
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Identification of AGO3-Associated miRNAs and Computational Prediction of Their Targets in the Green Alga Chlamydomonas reinhardtii

  2015cited by this paper
• New perspectives on the diversification of the RNA interference system: insights from comparative genomics and small RNA sequencing

  2014influential reference
• On the role of some ARGONAUTE proteins in meiosis and DNA repair in Arabidopsis thaliana

  2014cited by this paper
• Molecular mechanism of action of plant DRM de novo DNA methyltransferases.

  2014influential reference
• Dnmt1-independent CG methylation contributes to nucleosome positioning in diverse eukaryotes.

  2014influential reference
• Variations on a theme: Polycomb group proteins in plants.

  2014influential reference
• Cytosine DNA Methylation Is Found in Drosophila melanogaster but Absent in Saccharomyces cerevisiae, Schizosaccharomyces pombe, and Other Yeast Species

  2014cited by this paper
• Biogenesis, Turnover, and Mode of Action of Plant MicroRNAs[OPEN]

  2013influential reference
• Classification and comparison of small RNAs from plants.

  2013influential reference
• microRNAs in a multicellular green alga Volvox carteri

  2013influential reference
• Genome of the red alga Porphyridium purpureum

  2013cited by this paper
• Heat shock factor 1 counteracts epigenetic silencing of nuclear transgenes in Chlamydomonas reinhardtii

  2013cited by this paper
• Constraints to commercialization of algal fuels.

  2013cited by this paper
• Argonaute proteins: functional insights and emerging roles

  2013influential reference
• Gene Transfer from Bacteria and Archaea Facilitated Evolution of an Extremophilic Eukaryote

  2013cited by this paper
• Complementarity to an miRNA seed region is sufficient to induce moderate repression of a target transcript in the unicellular green alga Chlamydomonas reinhardtii.

  2013influential reference
• Advances in microalgae engineering and synthetic biology applications for biofuel production.

  2013influential reference
• Small Interfering RNA–Mediated Translation Repression Alters Ribosome Sensitivity to Inhibition by Cycloheximide in Chlamydomonas reinhardtii[W]

  2013cited by this paper
• Lipid metabolism in microalgae distinguishes itself.

  2013influential reference
• Evaluation of higher plant virus resistance genes in the green alga, Chlorella variabilis NC64A, during the early phase of infection with Paramecium bursaria chlorella virus-1.

  2013cited by this paper
• At the intersection of non-coding transcription, DNA repair, chromatin structure, and cellular senescence

  2013influential reference
• Algal biofuels: challenges and opportunities.

  2013cited by this paper
• Cyanophora paradoxa Genome Elucidates Origin of Photosynthesis in Algae and Plants

  2012cited by this paper
• Functional analysis of three type-2 DGAT homologue genes for triacylglycerol production in the green microalga Chlamydomonas reinhardtii.

  2012cited by this paper
• Dual binding of chromomethylase domains to H3K9me2-containing nucleosomes directs DNA methylation in plants.

  2012influential reference
• Solution Structure of MSL2 CXC Domain Reveals an Unusual Zn3Cys9 Cluster and Similarity to Pre-SET Domains of Histone Lysine Methyltransferases

  2012cited by this paper
• The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation

  2012cited by this paper
• Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage

  2012cited by this paper
• Decoding algal genomes: tracing back the history of photosynthetic life on Earth.

  2011influential reference
• Structure and Function of Histone H3 Lysine 9 Methyltransferases and Demethylases

  2011cited by this paper
• Phylogenetic analysis and classification of the Brassica rapa SET-domain protein family

  2011influential reference
• Differentiation of epigenetic modifications between transposons and genes.

  2011influential reference
• Regulation of chromatin by histone modifications

  2011influential reference
• Algal biodiesel economy and competition among bio-fuels.

  2011cited by this paper
• A dual flip-out mechanism for 5mC recognition by the Arabidopsis SUVH5 SRA domain and its impact on DNA methylation and H3K9 dimethylation in vivo.

  2011cited by this paper
• RNA-Mediated Silencing in Algae: Biological Roles and Tools for Analysis of Gene Function

  2011influential reference
• Genomic Analysis of Organismal Complexity in the Multicellular Green Alga Volvox carteri

  2010cited by this paper
• The Chlorella variabilis NC64A Genome Reveals Adaptation to Photosymbiosis, Coevolution with Viruses, and Cryptic Sex[C][W]

  2010cited by this paper
• The voyage of the microbial eukaryote.

  2010influential reference
• Establishing, maintaining and modifying DNA methylation patterns in plants and animals

  2010influential reference
• Desperately seeking microRNA targets

  2010cited by this paper
• Origin of the polycomb repressive complex 2 and gene silencing by an E(z) homolog in the unicellular alga Chlamydomonas

  2010influential reference
• Conservation and divergence of methylation patterning in plants and animals

  2010influential reference
• Lawrence Berkeley National Laboratory Lawrence Berkeley National Laboratory Title Genomic analysis of organismal complexity in the multicellular green alga

  2010cited by this paper
• Viral-encoded enzymes that target host chromatin functions.

  2010cited by this paper
• Genetic Engineering of Algae for Enhanced Biofuel Production

  2010influential reference
• Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation

  2010influential reference
• Origins and Mechanisms of miRNAs and siRNAs.

  2009influential reference
• Distinct and overlapping roles for two Dicer-like proteins in the RNA interference pathways of the ancient eukaryote Trypanosoma brucei

  2009cited by this paper
• Lipid productivity as a key characteristic for choosing algal species for biodiesel production

  2009cited by this paper
• Small silencing RNAs: an expanding universe

  2009influential reference
• MicroRNAs: Target Recognition and Regulatory Functions

  2009influential reference
• Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas

  2009cited by this paper
• Microalgal triacylglycerols as feedstocks for biofuel production: perspectives and advances.

  2008influential reference
• Glimpses of evolution: heterochromatic histone H3K9 methyltransferases left its marks behind

  2008influential reference
• Diversification of the Core RNA Interference Machinery in Chlamydomonas reinhardtii and the Role of DCL1 in Transposon Silencing

  2008influential reference
• Epigenetic transcriptional repression of cellular genes by a viral SET protein

  2008cited by this paper
• A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii.

  2007influential reference
• Maintenance DNA methyltransferase (Met1) and silencing of CpG-methylated foreign DNA in Volvox carteri

  2007cited by this paper
• miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii

  2007influential reference
• New nomenclature for chromatin-modifying enzymes.

  2007cited by this paper
• The Chlamydomonas Genome Reveals the Evolution of Key Animal and Plant Functions

  2007cited by this paper
• SET3p monomethylates histone H3 on lysine 9 and is required for the silencing of tandemly repeated transgenes in Chlamydomonas

  2007influential reference
• The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation

  2007cited by this paper
• On the origin and functions of RNA-mediated silencing: from protists to man

  2006influential reference
• Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.

  2006cited by this paper
• Evolutionary diversification of DNA methyltransferases in eukaryotic genomes.

  2005cited by this paper
• Eukaryotic cytosine methyltransferases.

  2005influential reference
• Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D

  2004cited by this paper
• Low temperature inhibits RNA silencing‐mediated defence by the control of siRNA generation

  2003cited by this paper
• Chloroplast DNA methylation and inheritance in Chlamydomonas.

  2001cited by this paper
• Temperature‐dependent gene silencing by an expressed inverted repeat in Drosophila

  2000cited by this paper
• Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

  2000cited by this paper
• Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans

  1998cited by this paper
• Epigenetic silencing of a foreign gene in nuclear transformants of Chlamydomonas.

  1997influential reference

• The Implication and Advancement of CRISPR Genome Editing in Microalgae and Cyanobacteria

  2025cites this paper
• Advances in epigenetics and epigenome editing in microalgae

  2025cites this paper
• Strain Improvement Through Genetic Engineering and Synthetic Biology for the Creation of Microalgae with Enhanced Lipid Accumulation, Stress Tolerance, and Production of High-value

  2025cites this paper
• Beyond Cutting: CRISPR-Driven Synthetic Biology Toolkit for Next-Generation Microalgal Metabolic Engineering

  2025cites this paper
• Expression of nisin inScenedesmus acutusand evaluation of its antimicrobial activity

  2025cites this paper
• Exploring MicroRNA's role in enhancing lipid biosynthesis in microalgae for green energy production

  2025cites this paper
• The outlooks and key challenges in renewable biomass feedstock utilization for value-added platform chemical via bioprocesses

  2024cites this paper
• Landscape of microalgae omics and metabolic engineering research for strain improvement: An overview

  2024cites this paper
• Site-specific gene knock-in and bacterial phytase gene expression in Chlamydomonas reinhardtii via Cas9 RNP-mediated HDR

  2023cites this paper
• Microalgae as a source of bioavailable heme

  2023cites this paper
• Molecular design of microalgae as sustainable cell factories.

  2023cites this paper
• Conserved functions of chromatin regulators in basal Archaeplastida.

  2023cites this paper
• Small RNAs >26 nt in length associate with AGO1 and are upregulated by nutrient deprivation in the alga Chlamydomonas

  2023cites this paper
• Accelerated Sunlight-Driven Conversion of Industrial Flue Gas into Biofuels by Microfluidic High-Throughput Screening Towards Improving Photosynthesis in Microalgae Under Fluctuating Light

  2022cites this paper
• Algal epigenetics: insights from DNA methylation in a symbiotic dinoflagellate

  2022cites this paper
• Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) technology and genetic engineering strategies for microalgae towards carbon neutrality: A critical review.

  2022cites this paper
• Marine microalgae as sustainable feedstock for multi-product biorefineries

  2022cites this paper
• The Histone Acetyltransferase HpGCN5 Involved in the Regulation of Abiotic Stress Responses and Astaxanthin Accumulation in Haematococcus pluvialis

  2022cites this paper
• Microalgal Biomass as Feedstock for Bacterial Production of PHA: Advances and Future Prospects

  2022cites this paper
• A novel class of long small RNAs associates with Argonaute1 and is up-regulated by nutrient deprivation in the alga Chlamydomonas

  2022cites this paper
• Genetic resources for microorganisms of current and potential use in aquaculture

  2021cites this paper
• New paradigm in diatom omics and genetic manipulation.

  2021cites this paper
• Seaweed-based biostimulant improves photosynthesis and effectively enhances growth and biofuel potential of a green microalga Chlorella variabilis

  2021cites this paper
• Agrobacterium tumefaciens-Mediated Nuclear Transformation of a Biotechnologically Important Microalga—Euglena gracilis

  2021cites this paper
• Resourceful treatment of harsh high-nitrogen rare earth element tailings (REEs) wastewater by carbonate activated Chlorococcum sp. microalgae.

  2021cites this paper
• Biological characteristics of energy conversion in carbon fixation by microalgae

  2021cites this paper
• Plasticity across levels: Relating epigenomic, transcriptomic, and phenotypic responses to osmotic stress in a halotolerant microalga

  2021influential citation
• Microalgae: A potential sustainable commercial source of sterols

  2020cites this paper
• Metabolic Engineering Strategies in Diatoms Reveal Unique Phenotypes and Genetic Configurations With Implications for Algal Genetics and Synthetic Biology

  2020cites this paper
• Epigenetic mechanisms leading to genetic flexibility during abiotic stress responses in microalgae: A review

  2020cites this paper
• Advances and challenges in genetic engineering of microalgae

  2020cites this paper
• A novel salt-inducible CrGPDH3 promoter of the microalga Chlamydomonas reinhardtii for transgene overexpression

  2019cites this paper
• miRNA-Mediated Regulation of Synthetic Gene Circuits in the Green Alga Chlamydomonas reinhardtii.

  2019cites this paper
• Loss of copy number and expression of transgene during meiosis in Pyropia tenera

  2019cites this paper
• Manipulation of Microalgal Lipid Production: A Genetic Engineering Aspect

  2019cites this paper
• INSIGHT INTO CRISPR SYSTEM IN EUKARYOTIC MICROALGAE, A REVIEW

  2019cites this paper
• Advances in Genetic Engineering of Microalgae

  2019cites this paper
• The effects of 5‐azacytidine and cadmium on global 5‐methylcytosine content and secondary metabolites in the freshwater microalgae Chlamydomonas reinhardtii and Scenedesmus quadricauda

  2019influential citation
• Genomic characterization reveals significant divergence within Chlorella sorokiniana (Chlorellales, Trebouxiophyceae)

  2018cites this paper
• Biohydrogen Production

  2018cites this paper
• An optimized method and a dominant selectable marker for genetic engineering of an industrially promising microalga—Pavlova lutheri

  2018cites this paper
• Isolation and Characterization of ARGONAUTE Mutants in Chlamydomonas.

  2017cites this paper
• Characterization of the Polycomb-Group Mark H3K27me3 in Unicellular Algae

  2017cites this paper
• Current status and perspectives of genome editing technology for microalgae

  2017cites this paper
• Natural selection and mechanistic regularity.

  2016cites this paper
• Argonaute3 is a key player in miRNA-mediated target cleavage and translational repression in Chlamydomonas.

  2016cites this paper
• Characterization of PyGUS gene silencing in the red macroalga, Pyropia yezoensis

  2016cites this paper
• Genetic Engineering: A Promising Tool to Engender Physiological, Biochemical, and Molecular Stress Resilience in Green Microalgae

  2016cites this paper
• Histone methyltransferases: novel targets for tumor and developmental defects.

  2015influential citation
• Evolution, functions, and mysteries of plant ARGONAUTE proteins.

  2015cites this paper
• Genetic Engineering Tools for Enhancing Lipid Production in Microalgae

  2015cites this paper
• Epigenetics and Evolution: Transposons and the Stochastic Epigenetic Modification Model

  2015cites this paper
• International Journal of Molecular Sciences the Potential for Microalgae as Bioreactors to Produce Pharmaceuticals

  year unknowncites this paper