A phylogeny of Bromeliaceae (Poales, Monocotyledoneae) derived from an evaluation of nine supertree methods

No abstract is available for this paper.

• Publication year

  2013

• Venue

  Journal of Systematics and Evolution

• Publication date

  2013-11-01

• Fields of study

  Biology

• Identifiers
  DOI 10.1111/jse.12044
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

• R: A language and environment for statistical computing.

  2014cited by this paper
• The taxonomic name resolution service: an online tool for automated standardization of plant names

  2013cited by this paper
• SuperFine: fast and accurate supertree estimation.

  2012influential reference
• CircadiOmics: integrating circadian genomics, transcriptomics, proteomics and metabolomics

  2012influential reference
• Molecular phylogenetics of the Brazilian giant bromeliads (Alcantarea, Bromeliaceae): implications for morphological evolution and biogeography.

  2012cited by this paper
• A Morphological Cladistic Analysis of the Vriesea corcovadensis Group (Bromeliaceae: Tillandsiodeae), with Anatomical Descriptions: New Evidence of the Non-Monophyly of the Genus

  2012cited by this paper
• Phylogeny, adaptive radiation, and historical biogeography in Bromeliaceae: insights from an eight-locus plastid phylogeny.

  2011influential reference
• Comparative performance of supertree algorithms in large data sets using the soapberry family (Sapindaceae) as a case study.

  2011influential reference
• Morphometric analyses within the Tillandsia utriculata L. complex (Bromeliaceae) allow for the recognition of a new species, with notes on its phylogenetic position1

  2011cited by this paper
• Unique calcium oxalate "duplex" and "concretion" idioblasts in leaves of tribe Naucleeae (Rubiaceae).

  2011cited by this paper
• Phylogenetic Relationships of the Pseudobulbous Tillandsia species (Bromeliaceae) Inferred from Cladistic Analyses of ITS 2, 5.8S Ribosomal RNA Gene, and ETS Sequences

  2010cited by this paper
• Phylogenetics of Puya (Bromeliaceae): Placement, major lineages, and evolution of Chilean species.

  2010cited by this paper
• Robinson-Foulds Supertrees

  2010influential reference
• DendroPy: a Python library for phylogenetic computing

  2010cited by this paper
• The Supertree Tool Kit

  2010cited by this paper
• Phylogenetic estimation of the core Bromelioids with an emphasis on the genus Aechmea (Bromeliaceae).

  2010cited by this paper
• phangorn: phylogenetic analysis in R

  2010cited by this paper
• Complete generic-level phylogenetic analyses of palms (Arecaceae) with comparisons of supertree and supermatrix approaches.

  2009cited by this paper
• Phylogeny of Bromelioideae (Bromeliaceae) inferred from nuclear and plastid DNA loci reveals the evolution of the tank habit within the subfamily.

  2009influential reference
• THE AVERAGE CONSENSUS PROCEDURE: COMBINATION OF WEIGHTED TREES CONTAINING IDENTICAL OR OVERLAPPING SETS OF TAXA

  2009influential reference
• A simulation study comparing supertree and combined analysis methods using SMIDGen

  2009cited by this paper
• Mesquite: a modular system for evolutionary analysis. Version 2.6

  2009cited by this paper
• Morphological Phylogenetics of Quesnelia (Bromeliaceae, Bromelioideae)

  2009cited by this paper
• Phylogenetic analysis of Fosterella L.B. Sm. (Pitcairnioideae, Bromeliaceae) based on four chloroplast DNA regions.

  2009cited by this paper
• Trees from trees: construction of phylogenetic supertrees using clann.

  2009cited by this paper
• Morphological phylogenetics of Puya subgenus Puya (Bromeliaceae)

  2008cited by this paper
• Multi locus plastid phylogeny of Bromelioideae (Bromeliaceae) and the taxonomic utility of petal appendages and pollen characters

  2008cited by this paper
• Properties of supertree methods in the consensus setting.

  2007influential reference
• PHYLOGENY, ADAPTIVE RADIATION, AND HISTORICAL BIOGEOGRAPHY OF BROMELIACEAE INFERRED FROM ndhF SEQUENCE DATA

  2007influential reference
• PhySIC: a veto supertree method with desirable properties.

  2007influential reference
• SYSTEMATICS OF BROMELIOIDEAE (BROMELIACEAE)¯EVIDENCE FROM MOLECULAR AND ANATOMICAL STUDIES

  2007cited by this paper
• Monophyly and Phylogenetic Relationships in Lymania (Bromeliaceae: Bromelioideae) Based on Morphology and Chloroplast DNA Sequences

  2007cited by this paper
• Total Evidence, Average Consensus and Matrix Representation with Parsimony: What a Difference Distances Make

  2006cited by this paper
• RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

  2006influential reference
• Extending the Limits of Supertree Methods

  2006cited by this paper
• Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion

  2006influential reference
• A complete phylogeny of the whales, dolphins and even‐toed hoofed mammals (Cetartiodactyla)

  2005cited by this paper
• Clann: investigating phylogenetic information through supertree analyses

  2005cited by this paper
• Analysis and visualization of tree space.

  2005influential reference
• Molecular phylogeny of Bromelioideae and its implications on biogeography and the evolution of CAM in the family

  2005cited by this paper
• Phylogenetic relationships in subfamily Tillandsioideae (Bromeliaceae) based on DNA sequence data from seven plastid regions.

  2005cited by this paper
• The shape of supertrees to come: tree shape related properties of fourteen supertree methods.

  2005cited by this paper
• Everything You always wanted to Know about the Average Consensus, and More

  2004influential reference
• PRAP-computation of Bremer support for large data sets.

  2004cited by this paper
• Multiple origins of crassulacean acid metabolism and the epiphytic habit in the Neotropical family Bromeliaceae.

  2004influential reference
• MUSCLE: multiple sequence alignment with high accuracy and high throughput.

  2004cited by this paper
• Inconsistencies in arguments for the supertree approach: supermatrices versus supertrees of Crocodylia.

  2004cited by this paper
• Some Desiderata for Liberal Supertrees

  2004influential reference
• Cladistic Relationships of Aechmea (Bromeliaceae, Bromelioideae) and Allied Genera

  2004cited by this paper
• PAUP* [Phylogenetic Analysis Using Parsimony (and Other Methods)]

  2004cited by this paper
• New uses for old phylogenies

  2004cited by this paper
• Performance of flip supertree construction with a heuristic algorithm.

  2004cited by this paper
• Rainbow: a toolbox for phylogenetic supertree construction and analysis

  2004influential reference
• Phylogenetic Supertrees: Combining Information To Reveal The Tree Of Life

  2004cited by this paper
• An update of the angiosperm phylogeny group classification for the orders and families of flowering plants : APGII

  2003cited by this paper
• Novel versus unsupported clades: assessing the qualitative support for clades in MRP supertrees.

  2003cited by this paper
• Supertrees are a necessary not-so-evil: a comment on Gatesy et al.

  2003cited by this paper
• An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants : APG II THE ANGIOSPERM PHYLOGENY GROUP *

  2003cited by this paper
• Building supertrees: an empirical assessment using the grass family (Poaceae).

  2002cited by this paper
• The (Super)Tree of Life: Procedures, Problems, and Prospects

  2002cited by this paper
• Building Supertrees: An Empirical Assessment Using the Grass Family (Poaceae)

  2002cited by this paper
• Modified Mincut Supertrees

  2002influential reference
• SEABIRD SUPERTREES: COMBINING PARTIAL ESTIMATES OF PROCELLARIIFORM PHYLOGENY

  2002cited by this paper
• Assessment of the Accuracy of Matrix Representation with Parsimony Analysis Supertree Construction

  2001cited by this paper
• War and peace in phylogenetics: a rejoinder on total evidence and consensus.

  2001influential reference
• Assessment of the accuracy of matrix representation with parsimony analysis supertree construction.

  2001cited by this paper
• Simple but fundamental limitations on supertree and consensus tree methods.

  2000influential reference
• Molecular Phylogenetics of Bromeliaceae: Evidence from trnL(UAA) Intron Sequences of the Chloroplast Genome

  2000cited by this paper
• Multiple Comparisons of Log-Likelihoods with Applications to Phylogenetic Inference

  1999cited by this paper
• The Parsimony Ratchet, a New Method for Rapid Parsimony Analysis

  1999cited by this paper
• Disk-Covering, a Fast-Converging Method for Phylogenetic Tree Reconstruction

  1999cited by this paper
• Phylogenetic supertrees: Assembling the trees of life.

  1998influential reference
• Examination of subfamilial phylogeny in Bromeliaceae using comparative sequencing of the plastid locus ndhF.

  1997influential reference
• Estimating Phylogenies from Lacunose Distance Matrices: Additive is Superior to Ultrametric Estimation

  1996influential reference
• On combining cladograms

  1996cited by this paper
• A Modification to Baum and Ragan's Method for Combining Phylogenetic Trees

  1995cited by this paper
• A comment on Baum's method for combining phylogenetic trees

  1993cited by this paper
• Phylogenetic inference based on matrix representation of trees.

  1992cited by this paper
• Kubitzki, K. (ed.), The Families and Genera of Vascular Plants

  1992cited by this paper
• Combining trees as a way of combining data sets for phylogenetic inference, and the desirability of combining gene trees

  1992cited by this paper
• Subfamilial Phylogenetic Relationships of the Bromeliaceae: Evidence from Chloroplast DNA Restriction Site Variation

  1990cited by this paper
• Consensus supertrees: The synthesis of rooted trees containing overlapping sets of labeled leaves

  1986cited by this paper
• Optimal algorithms for comparing trees with labeled leaves

  1985cited by this paper
• Congruence Between Morphometric and Allozyme Data for Menidia Species: A Reappraisal

  1980cited by this paper

• New insights into the classification, diversification, and evolutionary dynamics of bromeliads

  2024cites this paper
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  2019cites this paper
• Between Spines and Molecules: A Total Evidence Phylogeny of the Brazilian Endemic Genus Encholirium (Pitcairnioideae, Bromeliaceae)

  2019cites this paper
• Systematics of Vriesea (Bromeliaceae): phylogenetic relationships based on nuclear gene and partial plastome sequences

  2019cites this paper
• Does nomenclatural stability justify para/polyphyletic taxa? A phylogenetic classification in the xeric clade Pitcairnioideae (Bromeliaceae)

  2019cites this paper
• Diversity and Classification of Flowering Plants: Amborellales, Nymphaeales, Austrobaileyales, Magnoliids, Monocots, and Ceratophyllales

  2019cites this paper
• Bat pollination in Bromeliaceae

  2019cites this paper
• Reconstruction of ancestral genome size in Pitcairnioideae (Bromeliaceae): what can genome size tell us about the evolutionary history of its five genera?

  2018cites this paper
• Polyphyly and morphological convergence in Atlantic Forest species of Aechmea subgenus Chevaliera (Bromeliaceae)

  2018cites this paper
• Concerted anatomical change associated with crassulacean acid metabolism in the Bromeliaceae.

  2018cites this paper
• Functional types in the Bromeliaceae: relationships with drought resistance traits and bioclimatic distributions

  2017cites this paper
• Taxonomic revision of Bromeliaceae subfam. Tillandsioideae based on a multi-locus DNA sequence phylogeny and morphology

  2016cites this paper
• Advances in and perspectives on evolution in Bromeliaceae

  2016cites this paper
• Think tank: water relations of Bromeliaceae in their evolutionary context

  2016cites this paper
• Morphoanatomy of the ovary and ovule in Bromeliaceae subfamily Tillandsioideae and its systematic relevance

  2016cites this paper
• Trade-off between soluble protein production and nutritional storage in Bromeliaceae.

  2016cites this paper
• Overview of the systematics and diversity of Poales in the Neotropics with emphasis on the Brazilian flora

  2015cites this paper
• Photosynthetic pathways in Bromeliaceae: phylogenetic and ecological significance of CAM and C3 based on carbon isotope ratios for 1893 species

  2015cites this paper
• An Updated Overview of Taxonomy and Phylogenetic History of Tillandsioideae Genera (Bromeliaceae: Poales)

  2013cites this paper