Ecological transcriptomics – a non‐lethal sampling approach for endangered fire salamanders

No abstract is available for this paper.

• Publication year

  2015

• Venue

  Methods in Ecology and Evolution

• Publication date

  2015-12-01

• Fields of study

  Biology, Environmental Science

• Identifiers
  DOI 10.1111/2041-210X.12431
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

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  2002cited by this paper
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  2000cited by this paper
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  1990cited by this paper
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