Glu-Q-tRNAAsp synthetase coded by the yadB gene, a new paralog of aminoacyl-tRNA synthetase that glutamylates tRNAAsp anticodon

No abstract is available for this paper.

• Publication year

  2005

• Venue

  Biochimie

• Publication date

  2005-09-01

• Fields of study

  Biology

• Identifiers
  DOI 10.1016/J.BIOCHI.2005.03.007
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

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• An aminoacyl-tRNA synthetase-like protein encoded by the Escherichia coli yadB gene glutamylates specifically tRNAAsp.

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• A truncated aminoacyl-tRNA synthetase modifies RNA.

  2004influential reference
• Aminoacylation of the anticodon stem by a tRNA-synthetase paralog: relic of an ancient code?

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• The Escherichia coli YadB gene product reveals a novel aminoacyl-tRNA synthetase like activity.

  2004influential reference
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• Aminoacyl tRNA Synthetases

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• The complete genome sequence of Escherichia coli K-12.

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• Evolution of the Glx-tRNA synthetase family: the glutaminyl enzyme as a case of horizontal gene transfer.

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• Translation In Eukaryotes

  1991cited by this paper
• Enzymatic aminoacylation of an eight-base-pair microhelix with histidine.

  1990cited by this paper
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  1990cited by this paper
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  1990cited by this paper
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• The catalytic mechanism of the glutamyl-tRNA synthetase from Escherichia coli. Detection of an intermediate complex in which glutamate is activated.

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• Novel mechanism of post-transcriptional modification of tRNA. Insertion of bases of Q precursors into tRNA by a specific tRNA transglycosylase reaction.

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• Origin of the genetic code: a testable hypothesis based on tRNA structure, sequence, and kinetic proofreading.

  1978cited by this paper
• A co-evolution theory of the genetic code.

  1975cited by this paper
• 15. Aminoacyl-tRNA Synthetases

  1974cited by this paper

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