Iterative non-sequential protein structural alignment.

No abstract is available for this paper.

• Publication year

  2008

• Venue

  Computational systems bioinformatics. Computational Systems Bioinformatics Conference

• Publication date

  Unknown publication date

• Fields of study

  Biology, Medicine, Computer Science

• Identifiers
  DOI 10.1142/9781848162648_0016PMID 19642279
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Indexing protein structures using suffix trees.

  2008influential reference
• Comparative Analysis of Protein Structure Alignments

  2007influential reference
• A Parameterized Algorithm for Protein Structure Alignment

  2006cited by this paper
• A substitution matrix for structural alphabet based on structural alignment of homologous proteins and its applications

  2006cited by this paper
• TM-align: a protein structure alignment algorithm based on the TM-score

  2005cited by this paper
• Chaining algorithms for multiple genome comparison

  2005cited by this paper
• Non-sequential structure-based alignments reveal topology-independent core packing arrangements in proteins

  2005influential reference
• Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures.

  2005influential reference
• FAST: A novel protein structure alignment algorithm

  2004influential reference
• Approximate protein structural alignment in polynomial time.

  2004cited by this paper
• Flexible structure alignment by chaining aligned fragment pairs allowing twists

  2003influential reference
• CTSS: a robust and efficient method for protein structure alignment based on local geometrical and biological features

  2003cited by this paper
• LGA: a method for finding 3D similarities in protein structures

  2003cited by this paper
• Protein structure alignment using environmental profiles.

  2000influential reference
• Structure Comparison and Structure Patterns

  2000cited by this paper
• HMMSTR: a hidden Markov model for local sequence-structure correlations in proteins.

  2000cited by this paper
• Comprehensive assessment of automatic structural alignment against a manual standard, the scop classification of proteins

  1998cited by this paper
• Protein structure alignment by incremental combinatorial extension (CE) of the optimal path.

  1998cited by this paper
• CATH--a hierarchic classification of protein domain structures.

  1997cited by this paper
• SSAP: sequential structure alignment program for protein structure comparison.

  1996cited by this paper
• Using Iterative Dynamic Programming to Obtain Accurate Pairwise and Multiple Alignments of Protein Structures

  1996influential reference
• Surprising similarities in structure comparison.

  1996cited by this paper
• SARFing the PDB.

  1996influential reference
• SCOP: a structural classification of proteins database for the investigation of sequences and structures.

  1995cited by this paper
• Structural similarity of DNA-binding domains of bacteriophage repressors and the globin core.

  1993influential reference
• Protein structure comparison by alignment of distance matrices.

  1993influential reference
• Matrix computations

  1983cited by this paper
• The NP-Completeness Column: An Ongoing Guide

  1982cited by this paper
• A solution for the best rotation to relate two sets of vectors

  1976cited by this paper
• A general method applicable to the search for similarities in the amino acid sequence of two proteins.

  1970cited by this paper
• Electronic Reprint Biological Crystallography the Protein Data Bank Biological Crystallography the Protein Data Bank

  year unknowncited by this paper

• Topology-independent and global protein structure alignment through an FFT-based algorithm

  2019cites this paper
• Descriptor based protein structure representation using triangular spatial relationships in 3-D

  2017cites this paper
• Fast and accurate non-sequential protein structure alignment using a new asymmetric linear sum assignment heuristic

  2016cites this paper
• Structural bioinformatics Fast and accurate non-sequential protein structure alignment using a new asymmetric linear sum assignment heuristic

  2016cites this paper
• MICAN : a protein structure alignment algorithm that can handle Multiple-chains, Inverse alignments, Cα only models, Alternative alignments, and Non-sequential alignments

  2013cites this paper
• SAS-Pro: Simultaneous Residue Assignment and Structure Superposition for Protein Structure Alignment

  2012cites this paper
• On Complexity of Protein Structure Alignment Problem under Distance Constraint

  2012cites this paper
• A Journey in Pattern Mining

  2012cites this paper
• Data Integration via Constrained Clustering: An Application to Enzyme Clustering

  2011cites this paper
• Utilizando agrupamento com restrições e agrupamento espectral para integração de dados de enzimas

  2011cites this paper
• Efficient protein alignment algorithm for protein search

  2010cites this paper
• A novel priority based data mining algorithm using improved K-means clustering for detecting protein sequence from dataset

  2010cites this paper
• Non-sequential and flexible protein structure alignment

  2009influential citation