Molecular detection and in silico characterization of cold shock protein coding gene (cspA) from cold adaptive Pseudomonas koreensis

No abstract is available for this paper.

• Publication year

  2019

• Venue

  Journal of Plant Biochemistry and Biotechnology

• Publication date

  2019-03-27

• Fields of study

  Biology, Environmental Science

• Identifiers
  DOI 10.1007/s13562-019-00500-8
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

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  2010cited by this paper
• PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes

  2010influential reference
• The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments.

  2009cited by this paper
• Comparative proteome analysis of psychrophilic versus mesophilic bacterial species: Insights into the molecular basis of cold adaptation of proteins

  2009cited by this paper
• QMEAN server for protein model quality estimation

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• Classifying RNA-Binding Proteins Based on Electrostatic Properties

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• Coping with Our Cold Planet

  2008cited by this paper
• Psychrophilic microorganisms: challenges for life

  2006cited by this paper
• Prediction of protein subcellular localization

  2006influential reference
• Recent developments in bacterial cold-shock response.

  2004cited by this paper
• Comparative Genomics of Four Pseudomonas Species

  2004cited by this paper
• Changes in Escherichia coli transcriptome during acclimatization at low temperature.

  2003cited by this paper
• CASTp: Computed Atlas of Surface Topography of proteins

  2003cited by this paper
• SWISS-MODEL: an automated protein homology-modeling server

  2003cited by this paper
• Annotating nucleic acid-binding function based on protein structure.

  2003cited by this paper
• Multiple Sequence Alignment Using ClustalW and ClustalX

  2003influential reference
• PDBsum: summaries and analyses of PDB structures

  2001cited by this paper
• Cold tolerance of Pseudomonas sp. 30-3 isolated from oil-contaminated soil, Antarctica

  2001cited by this paper
• Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence.

  2000cited by this paper
• Protein identification and analysis tools in the ExPASy server.

  1999cited by this paper
• Cold-shock response and cold-shock proteins.

  1999cited by this paper
• Codon usage and lateral gene transfer in Bacillus subtilis.

  1999cited by this paper
• Cold shock and adaptation

  1998cited by this paper
• Amelioration of Bacterial Genomes: Rates of Change and Exchange

  1997cited by this paper
• A family of cold shock proteins in Bacillus subtilis is essential for cellular growth and for efficient protein synthesis at optimal and low temperatures

  1997cited by this paper
• VERIFY3D: assessment of protein models with three-dimensional profiles.

  1997cited by this paper
• Differential mRNA stability of the cspA gene in the cold‐shock response of Escherichia coli

  1996cited by this paper
• Mutational analysis of the putative nucleic acid‐binding surface of the cold‐shock domain, CspB, revealed an essential role of aromatic and basic residues in binding of single‐stranded DNA containing the Y‐box motif

  1995cited by this paper
• Occurrence and expression of cspA, a cold shock gene, in Antarctic psychrotrophic bacteria.

  1994cited by this paper
• Crystal structure of CspA, the major cold shock protein of Escherichia coli.

  1994cited by this paper
• Verification of protein structures: Patterns of nonbonded atomic interactions

  1993cited by this paper
• Universal nucleic acid-binding domain revealed by crystal structure of the B. subtilis major cold-shock protein

  1993cited by this paper
• The rapid generation of mutation data matrices from protein sequences

  1992cited by this paper
• Evidence for horizontal gene transfer in Escherichia coli speciation.

  1991cited by this paper
• Major cold shock protein of Escherichia coli.

  1990cited by this paper
• Correlation between stability of a protein and its dipeptide composition: a novel approach for predicting in vivo stability of a protein from its primary sequence.

  1990cited by this paper
• Basic local alignment search tool.

  1990cited by this paper
• Short protocols in molecular biology : a compendium of methods from Current protocols in molecular biology

  1989cited by this paper
• Calculation of protein extinction coefficients from amino acid sequence data.

  1989cited by this paper
• A simple method for displaying the hydropathic character of a protein.

  1982cited by this paper
• Thermostability and aliphatic index of globular proteins.

  1980cited by this paper
• Electronic Reprint Biological Crystallography the Protein Data Bank Biological Crystallography the Protein Data Bank

  year unknowninfluential reference

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• Prevention and control strategies for psychrophilic Pseudomonas fluorescens in food: A review.

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• Pseudomonas From Extreme Environments: Physiological and Molecular Adaptations

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• Psychrotrophic Microbes: Biodiversity, Adaptation, and Implications

  2021cites this paper
• Microbial Adaptations Under Low Temperature

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• Microbes for Cold Stress Resistance in Plants: Mechanism, Opportunities, and Challenges

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• Psychrophilic Pseudomonas helmanticensis proteome under simulated cold stress

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• Molecular insights into the ecology of a psychrotolerant Pseudomonas syringae.

  2020cites this paper
• Draft genome sequence of a cold-adapted phosphorous-solubilizing Pseudomonas koreensis P2 isolated from Sela Lake, India

  2019cites this paper