Importance of soil organic matter for the diversity of microorganisms involved in the degradation of organic pollutants

No abstract is available for this paper.

• Publication year

  2014

• Venue

  The ISME Journal

• Publication date

  2014-01-16

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1038/ismej.2013.233PMID 24430482PMCID PMC4030228
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Molecular Microbial Ecology Manual

  2013cited by this paper
• Response of microbial communities to long-term fertilization depends on their microhabitat.

  2013influential reference
• Identification of Bacteria Utilizing Biphenyl, Benzoate, and Naphthalene in Long-Term Contaminated Soil

  2012influential reference
• Use of specific peaks obtained by diffuse reflectance Fourier transform mid‐infrared spectroscopy to study the composition of organic matter in a Haplic Chernozem

  2012cited by this paper
• Betaproteobacteria dominance and diversity shifts in the bacterial community of a PAH-contaminated soil exposed to phenanthrene.

  2012cited by this paper
• Root exudates modify bacterial diversity of phenanthrene degraders in PAH-polluted soil but not phenanthrene degradation rates.

  2011cited by this paper
• pH-Dependent sorption of acidic organic chemicals to soil organic matter.

  2009cited by this paper
• Biodegradation potential of the genus Rhodococcus.

  2009cited by this paper
• Comparison of DNA‐ and RNA‐based bacterial community structures in soil exposed to 2,4‐dichlorophenol

  2009cited by this paper
• Stable isotope probing reveals Trichosporon yeast to be active in situ in soil phenol metabolism

  2009cited by this paper
• An integrative approach of organic matter stabilization in temperate soils: Linking chemistry, physics, and biology

  2008cited by this paper
• The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

  2008cited by this paper
• MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0.

  2007cited by this paper
• Identification of in situ 2,4-dichlorophenoxyacetic acid-degrading soil microorganisms using DNA-stable isotope probing

  2007cited by this paper
• DNA stable-isotope probing

  2007cited by this paper
• Soil microbiological and biochemical properties affected by plant growth and different long-term fertilisation

  2006cited by this paper
• Long-term management impacts on soil C, N and physical fertility: Part II: Bad Lauchstadt static and extreme FYM experiments

  2006influential reference
• Distribution of the Mycobacterium community and polycyclic aromatic hydrocarbons (PAHs) among different size fractions of a long-term PAH-contaminated soil.

  2006cited by this paper
• Importance of Soil Organic Matter Fractions in Soil-Landscape and Regional Assessments of Pesticide Sorption and Leaching in Soil

  2006cited by this paper
• Phenol Degradation by Immobilized Cells of Arthrobacter citreus

  2006cited by this paper
• Effect of Elevated Tropospheric Ozone on the Structure of Bacterial Communities Inhabiting the Rhizosphere of Herbaceous Plants Native to Germany

  2005cited by this paper
• Low-temperature biodegradation of high amounts of phenol by Rhodococcus spp. and basidiomycetous yeasts.

  2005cited by this paper
• Stable isotope probing reveals the dominant role of Burkholderia species in aerobic degradation of PCBs.

  2005cited by this paper
• At Least 1 in 20 16S rRNA Sequence Records Currently Held in Public Repositories Is Estimated To Contain Substantial Anomalies

  2005cited by this paper
• Microbial biomass, enzyme activities and microbial community structure in two European long-term field experiments

  2005influential reference
• Fungal-specific PCR primers developed for analysis of the ITS region of environmental DNA extracts

  2005cited by this paper
• Chernozem—Soil of the Year 2005

  2005cited by this paper
• Biodegradation of phenol and phenol-related compounds by psychrophilic and cold-tolerant alpine yeasts.

  2005cited by this paper
• Soil organic matter fractions as early indicators for carbon stock changes under different land-use?

  2005cited by this paper
• Cultivation-independent in situ molecular analysis of bacteria involved in degradation of pentachlorophenol in soil.

  2005cited by this paper
• The AxML program family for maximum likelihood‐based phylogenetic tree inference

  2004cited by this paper
• Abbau chlorierter Benzole, Phenole und Cyclohexan-Derivate durch Benzol und Phenol verwertende Bodenbakterien unter aeroben Bedingungen

  2004cited by this paper
• Section 3 update: Microbial community analysis by PCR-single-strand conformation polymorphism (PCR-SSCP)

  2004cited by this paper
• ARB: a software environment for sequence data.

  2004cited by this paper
• Respiration of 13C-Labeled Substrates Added to Soil in the Field and Subsequent 16S rRNA Gene Analysis of 13C-Labeled Soil DNA

  2003cited by this paper
• Effects of organic matter heterogeneity on sorption and desorption of organic contaminants by soils and sediments

  2003cited by this paper
• The nature of soil organic matter affects sorption of pesticides. 1. Relationships with carbon chemistry as determined by 13C CPMAS NMR spectroscopy.

  2001cited by this paper
• OECD GUIDELINE FOR THE TESTING OF CHEMICALS Adsorption-Desorption Using a Batch Equilibrium Method

  2000cited by this paper
• Stable-isotope probing as a tool in microbial ecology

  2000cited by this paper
• Degradation of 2,4-D, 2,4-Dichlorophenol, and 4-Chlorophenol in Soil after Sorption on Humified and Nonhumified Organic Matter

  1999cited by this paper
• Degradation of Chlorobenzenes at Nanomolar Concentrations byBurkholderia sp. Strain PS14 in Liquid Cultures and in Soil

  1999cited by this paper
• Modeling Mass Transfer Processes in Soil Columns with Pore-Scale Heterogeneity

  1998cited by this paper
• A New Approach To Utilize PCR–Single-Strand-Conformation Polymorphism for 16S rRNA Gene-Based Microbial Community Analysis

  1998cited by this paper
• Turnover of soil organic matter (SOM) and long‐term balances — tools for evaluating sustainable productivity of soils

  1998cited by this paper
• Carbon, nitrogen, and sulfur pools in particle-size fractions as influenced by climate

  1998cited by this paper
• Mass transfer limitation of biotransformation: quantifying bioavailability

  1997cited by this paper
• Competitive Sorption between Atrazine and Other Organic Compounds in Soils and Model Sorbents

  1996cited by this paper
• Time-dependent isotherm shape of organic compounds in soil organic matter : Implications for sorption mechanism

  1996cited by this paper
• Land‐use effects on the composition of organic matter in particle‐size separates of soil: I. Lignin and carbohydrate signature

  1994cited by this paper
• Sorption of phenol by selected biopolymers: isotherms, energetics, and polarity.

  1994cited by this paper
• Unspecific degradation of halogenated phenols by the soil fungus Penicillium frequentans Bi 7/2

  1994cited by this paper
• Composition of organic matter in particle‐size fractions of an agricultural soil

  1993cited by this paper
• Catabolism of benzene compounds by ascomycetous and basidiomycetous yeasts and yeastlike fungi

  1993cited by this paper
• ITS primers with enhanced specificity for basidiomycetes ‐ application to the identification of mycorrhizae and rusts

  1993cited by this paper
• Physical Fractionation of Soil and Organic Matter in Primary Particle Size and Density Separates

  1992cited by this paper
• PCR protocols — A guide to methods and applications

  1990cited by this paper
• Basic local alignment search tool.

  1990cited by this paper
• Influence of sterilization methods on selected soil microbiological, physical, and chemical properties

  1989cited by this paper
• Microbial biomass measurements in forest soils: The use of the chloroform fumigation-incubation method in strongly acid soils

  1987cited by this paper
• Sorption kinetics of hydrophobic organic compounds to natural sediments and soils.

  1986cited by this paper
• Advances in Soil Science

  1986cited by this paper
• Limitations in the application of the fumigation technique for biomass estimations in amended soils.

  1985cited by this paper
• Chemical wastes and their biodegradation--an overview.

  1983cited by this paper
• Microbial degradation of chemical waste, an alternative to physical methods of waste disposal

  1983cited by this paper
• Semi-empirical estimation of sorption of hydrophobic pollutants on natural sediments and soils

  1981cited by this paper
• The effects of biocidal treatments on metabolism in soil—V: A method for measuring soil biomass

  1976cited by this paper
• [Degradation of chlorinated benzenes, phenols and cyclohexane derivatives by benzene and phenol utilizing soil bacteria under aerobic conditions (author's transl)].

  1974cited by this paper

• Abundance of Indigenous Soybean-Nodulating Rhizobia in Relation to Soil Properties and Cropping Patterns in a Midland Agro-Ecology of Southern Ethiopia

  2026cites this paper
• 100 Years of Soil Organic Matter Priming Research

  2025cites this paper
• Colonization Mechanism of Endophytes with Plants and Their Role in Pesticides Degradation.

  2025cites this paper
• Insights Into the Enhanced Biodegradation of Pyrene Under Glucose Co-Metabolism

  2025cites this paper
• Soil Organic Carbon and Nitrogen Fractions as Affected by the Co-Incorporation of Rice and Chinese Milk Vetch Residues in Paddy Fields

  2025cites this paper
• Microbial aerobic degradation of highly chlorinated pollutants in liquid media since 1967: A review of taxonomy and degradation efficiencies.

  2025cites this paper
• Algal diversity: A key driver of nitrogen immobilization by phototrophic biofilms at soil-water interfaces in paddy fields.

  2025cites this paper
• Transformations of 6PPD and 6PPD-quinone in soil under redox-driven conditions: Kinetics, product identification, and environmental implications.

  2025cites this paper
• Enhancing the Proton Exchange Membrane in Tubular Air-Cathode Microbial Fuel Cells through a Hydrophobic Polymer Coating on a Hydrogel

  2024cites this paper
• Pyraclostrobin repeated treatment altered the degradation behavior in soil and negatively affected soil bacterial communities and functions.

  2024cites this paper
• Investigating Soil Organic Matter Complexation using Spectral Induced Polarization

  2024cites this paper
• Toxic metal pollution and associated health risk in nonferrous metal smelting soil containing clay minerals.

  2024cites this paper
• Effects of Irrigation with Slightly Algae-Contaminated Water on Soil Moisture, Nutrient Redistribution, and Microbial Community

  2024cites this paper
• Ecological responses and functional significance of paddy crust in the southern Chinese environment.

  2024cites this paper
• Isolation and characterization of Rhizobium from non-leguminous potato plants: New frontiers in Rhizobium research

  2024cites this paper
• Soil carbon sequestration in paddy field and its simultaneous mineralization to supply available nutrients for the crops are affected by no-tillage with straw management: A meta-analysis

  2023cites this paper
• Heavy metal-resistant rhizobacteria fosters to alleviate the cadmium toxicity in Arabidopsis by upregulating the plant physiological responses

  2023cites this paper
• Digital mapping of cultivated land soil organic matter in hill-mountain and plain regions

  2023cites this paper
• Spatial and seasonal controls on dissolved organic matter composition in shallow aquifers under the rapidly developing City of Patna, India.

  2023cites this paper
• Effects of Biochar Amendment on Nitrous Oxide Emission, Bacterial and Fungal Community Composition in a Tobacco-Planting Soil

  2023cites this paper
• Role of microbial iron reduction in arsenic metabolism from soil particle size fractions in simulated human gastrointestinal tract.

  2023cites this paper
• Earthworms enhance the bioremediation of tris(2-butoxyethyl) phosphate-contaminated soil by releasing degrading microbes.

  2023cites this paper
• Spatio-Temporal Variation and Its Driving Forces of Soil Organic Carbon along an Urban–Rural Gradient: A Case Study of Beijing

  2022cites this paper
• ¿La palma aceitera (Elaeis guineensis) genera un impacto negativo sobre el suelo? Una revisión

  2022cites this paper
• Soil plastisphere: Exploration methods, influencing factors, and ecological insights.

  2022cites this paper
• Pesticide residues degradation strategies in soil and water: a review

  2021cites this paper
• Land Suitability Assessment for Cassava var. Jarak Towo, Using Determinant Factors as the Strategy Fundament in Hilly Area Jatiyoso-Indonesia

  2021cites this paper
• Soil Organic Carbon Enrichment Triggers In Situ Nitrogen Interception by Phototrophic Biofilms at the Soil-Water Interface: From Regional Scale to Microscale.

  2021cites this paper
• Effect of Environmental Factors on Soil Nutrient Loss under Conditions of Mining Disturbance in a Coalfield

  2021cites this paper
• K Fertilizers Reduce the Accumulation of Cd in Panax notoginseng (Burk.) F.H. by Improving the Quality of the Microbial Community

  2020cites this paper
• DNA Stable-Isotope Probing Delineates Carbon Flows from Rice Residues into Soil Microbial Communities Depending on Fertilization

  2020cites this paper
• Distinct regulation of microbial processes in the immobilization of labile carbon in different soils

  2020cites this paper
• The fractions transformation and dissipation mechanism of Dechlorane Plus in the rhizosphere of soil-plant system.

  2020cites this paper
• Effect of dibutyl phthalate on microbial function diversity and enzyme activity in wheat rhizosphere and non-rhizosphere soils.

  2020cites this paper
• Culture-independent analysis of linuron-mineralizing microbiota and functions in on-farm biopurification systems via DNA-Stable Isotope Probing: comparison with enrichment culture.

  2020cites this paper
• First report of diazotrophic Brevundimonas spp. as growth enhancer and root colonizer of potato

  2020cites this paper
• Highly decomposed organic carbon mediates the assembly of soil communities with traits for the biodegradation of chlorinated pollutants.

  2020cites this paper
• Influence of Zinc Oxide Nanoparticles on Soil Physicochemical Properties and Arachis hypogea Rhizosphere Microbial Community

  2020cites this paper
• Characterization of the Integrated Signaling Network of Burkholderia Glumae for the Regulation of Virulence-Related function in the Bacterial Pathogenesis of Rice Plants

  2019cites this paper
• Habitat disturbance and the organization of bacterial communities in Neotropical hematophagous arthropods

  2019cites this paper
• Comparative metagenomics study reveals pollution induced changes of microbial genes in mangrove sediments

  2019cites this paper
• Soil Aggregate Microbial Communities: Towards Understanding Microbiome Interactions at Biologically Relevant Scales

  2019cites this paper
• Ubiquity of microbial capacity to degrade metaldehyde in dissimilar agricultural, allotment and garden soils.

  2019cites this paper
• Spatial distribution of soil organic matter in a coal mining subsidence area

  2019cites this paper
• University of São Paulo “Luiz de Queiroz” College of Agriculture The microbiome related to carbon and nitrogen cycling in pure and mixed Eucalyptus grandis and Acacia mangium plantations

  2018cites this paper
• Acacia Changes Microbial Indicators and Increases C and N in Soil Organic Fractions in Intercropped Eucalyptus Plantations

  2018cites this paper
• Evaluating the effects of phytoremediation with biochar additions on soil nitrogen mineralization enzymes and fungi

  2018cites this paper
• Soil fertility effects of repeated application of sewage sludge in two 30-year-old field experiments

  2018cites this paper
• Are the microbial communities involved in glucose assimilation in paddy soils treated with different fertilization regimes for three years similar?

  2018cites this paper
• Effects of land subsidence resulted from coal mining on soil nutrient distributions in a loess area of China

  2018cites this paper
• Hydrocarbon and Lipid Microbiology Protocols

  2017cites this paper
• Interconnection of Key Microbial Functional Genes for Enhanced Benzo[a]pyrene Biodegradation in Sediments by Microbial Electrochemistry.

  2017cites this paper
• Soil Pollution - An Emerging Threat to Agriculture

  2017cites this paper
• Remediation and Management of Polluted Sites

  2017cites this paper
• Production of Efficient Microbial Complex for Organic Fraction of Municipal Organic Solid Waste Pretreatment Upstream Anaerobic Digestion

  2017cites this paper
• Vertical distribution of dehalogenating bacteria in mangrove sediment and their potential to remove polybrominated diphenyl ether contamination.

  2017cites this paper
• Restoration using Azolla imbricata increases nitrogen functional bacterial groups and genes in soil

  2017cites this paper
• Transformation of hexabromocyclododecane in contaminated soil in association with microbial diversity.

  2017cites this paper
• Tillage practices and straw-returning methods affect topsoil bacterial community and organic C under a rice-wheat cropping system in central China

  2016cites this paper
• Contaminant‐Degrading Microorganisms Identified Using Stable Isotope Probing

  2016cites this paper
• From agricultural use of sewage sludge to nutrient extraction: A soil science outlook

  2016cites this paper
• Isolation of bacteria from contaminated soil and their biodegradation potential

  2015cites this paper
• Microbial Community Profiling: SSCP and T-RFLP Techniques

  2015cites this paper
• Soil particle size fractions harbour distinct microbial communities and differ in potential for microbial mineralisation of organic pollutants

  2015cites this paper
• Bacterial community in semiarid hydrocarbon contaminated soils treated by aeration and organic amendments

  2014cites this paper
• Artificial soil studies reveal domain-specific preferences of microorganisms for the colonisation of different soil minerals and particle size fractions.

  2014cites this paper
• The influence and risk assessment of multiple pollutants on the bacterial and archaeal communities in agricultural lands with different climates and soil properties

  year unknowncites this paper