Precise switching of DNA replication timing in the GC content transition area in the human major histocompatibility complex

No abstract is available for this paper.

• Publication year

  1997

• Venue

  Molecular and Cellular Biology

• Publication date

  1997-07-01

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1128/MCB.17.7.4043PMID 9199339PMCID PMC232257
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

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• Refinement of HLA gene mapping with induced B-cell line mutants

  2004cited by this paper
• Gene organization of human NOTCH4 and (CTG)n polymorphism in this human counterpart gene of mouse proto-oncogene Int3.

  1997cited by this paper
• Human pseudoautosomal boundary-like sequences: expression and involvement in evolutionary formation of the present-day pseudoautosomal boundary of human sex chromosomes.

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• Mapping of replication initiation sites in human ribosomal DNA by nascent-strand abundance analysis

  1995cited by this paper
• A boundary of long-range G + C% mosaic domains in the human MHC locus: pseudoautosomal boundary-like sequence exists near the boundary.

  1995influential reference
• Pausing of simian virus 40 DNA replication fork movement in vivo by (dG-dA)n.(dT-dC)n tracts.

  1994cited by this paper
• High-resolution replication bands compared with morphologic G- and R-bands.

  1994cited by this paper
• Three genes in the human MHC class III region near the junction with the class II: gene for receptor of advanced glycosylation end products, PBX2 homeobox gene and a notch homolog, human counterpart of mouse mammary tumor gene int-3.

  1994influential reference
• The isochore organization of the human genome and its evolutionary history--a review.

  1993cited by this paper
• Isochores and CpG islands in YAC contigs in human Xq26.1-qter.

  1993cited by this paper
• Genes and genomes: chromosome bands – flavours to savour

  1993cited by this paper
• Fine mapping of the human MHC class II region within chromosome band 6p21 and evaluation of probe ordering using interphase fluorescence in situ hybridization.

  1993cited by this paper
• Correlations between isochores and chromosomal bands in the human genome.

  1993cited by this paper
• Searching for replication origins in mammalian DNA.

  1993cited by this paper
• Chromosome bands--flavours to savour.

  1993cited by this paper
• Initiation and termination of DNA replication in human rRNA genes

  1993cited by this paper
• Regional base composition variation along yeast chromosome III: evolution of chromosome primary structure.

  1993cited by this paper
• A novel procedure for quantitative polymerase chain reaction by coamplification of competitive templates.

  1992influential reference
• Cluster of fibronectin type III repeats found in the human major histocompatibility complex class III region shows the highest homology with the repeats in an extracellular matrix protein, tenascin.

  1992influential reference
• Purification of BrdUrd-substituted DNA by immunoaffinity chromatography with anti-BrdUrd antibodies.

  1992cited by this paper
• Intramolecular DNA triplexes: unusual sequence requirements and influence on DNA polymerization.

  1992cited by this paper
• Identification of a site required for DNA replication fork blocking activity in the rRNA gene cluster in Saccharomyces cerevisiae

  1992cited by this paper
• Chromosome bands, their chromatin flavors, and their functional features.

  1992cited by this paper
• Competitive PCR

  1992cited by this paper
• Temporal order of DNA replication in the H-2 major histocompatibility complex of the mouse

  1992cited by this paper
• Formation of DNA triplexes accounts for arrests of DNA synthesis at d(TC)n and d(GA)n tracts.

  1991cited by this paper
• Evident diversity of codon usage patterns of human genes with respect to chromosome banding patterns and chromosome numbers; relation between nucleotide sequence data and cytogenetic data.

  1991cited by this paper
• Avian nuclear matrix proteins bind very tightly to cellular DNA of the beta-globin gene enhancer in a tissue-specific fashion.

  1991cited by this paper
• Position and orientation-dependent effects of a eukaryotic Z-triplex DNA motif on episomal DNA replication in COS-7 cells.

  1991cited by this paper
• Map of the human MHC.

  1991cited by this paper
• Map of the human MHC.

  1991cited by this paper
• Structural topography of simian virus 40 DNA replication

  1991cited by this paper
• Analysis of cytokine mRNA and DNA: detection and quantitation by competitive polymerase chain reaction.

  1990cited by this paper
• A compositional map of human chromosome 21.

  1990cited by this paper
• Novel families of interspersed repetitive elements from the human genome

  1990cited by this paper
• The size of chromatin loops in HeLa cells.

  1990cited by this paper
• Giant G+C% mosaic structures of the human genome found by arrangement of GenBank human DNA sequences according to genetic positions.

  1990cited by this paper
• Evolution of the pseudoautosomal boundary in Old World monkeys and great apes.

  1990cited by this paper
• The isochore organization of the human genome.

  1989cited by this paper
• The mammalian pseudoautosomal region.

  1989cited by this paper
• The pseudoautosomal boundary in man is defined by an Alu repeat sequence inserted on the Y chromosome

  1989cited by this paper
• Evolution of chromosome bands: Molecular ecology of noncoding DNA

  1989cited by this paper
• A gentle method for preparing cyto- and nucleo-skeletons and associated chromatin.

  1988cited by this paper
• Global variation in G+C content along vertebrate genome DNA. Possible correlation with chromosome band structures.

  1988cited by this paper
• A consensus sequence of three DNA replication terminus sites on the E. coli chromosome is highly homologous to the terR sites of the R6K plasmid.

  1988cited by this paper
• Identification of attachment proteins for DNA in Chinese hamster ovary cells.

  1988cited by this paper
• Characterization of human DNA sequences synthesized at the onset of S-phase.

  1987influential reference
• Diversity in G + C content at the third position of codons in vertebrate genes and its cause.

  1986cited by this paper
• Structural organizations of replicon domains during DNA synthetic phase in the mammalian nucleus.

  1986cited by this paper
• The mosaic genome of warm-blooded vertebrates.

  1985cited by this paper
• Codon usage and tRNA content in unicellular and multicellular organisms.

  1985cited by this paper
• Replication timing of genes and middle repetitive sequences.

  1984cited by this paper
• Proteins tightly bound to HeLa cell DNA at nuclear matrix attachment sites

  1983cited by this paper
• Characterization of Giemsa dark- and light-band DNA.

  1982cited by this paper
• Proteins tightly bound to DNA in the regions of DNA attachment to the skeletal structures of interphase nuclei and metaphase chromosomes.

  1981cited by this paper
• Synchronization of HeLa cell cultures by inhibition of DNA polymerase alpha with aphidicolin.

  1980influential reference
• The temporal structure of S phase.

  1975cited by this paper
• On the mechanism of DNA replication in mammalian chromosomes.

  1968cited by this paper

• DNA Replication Timing, Genome Stability and Non-adaptive Radiation

  2025cites this paper
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  2023cites this paper
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  2021cites this paper
• NON-DECIMATED WAVELET ANALYSIS OF BIOLOGICAL SEQUENCES: APPLICATIONS TO PROTEIN STRUCTURE AND GENOMICS

  2016cites this paper
• Introduction to Evolutionary Genomics

  2014cites this paper
• Cell line differences in replication timing of human glutamate receptor genes and other large genes associated with neural disease

  2014influential citation
• Identification of Horizontally-transferred Genomic Islands and Genome Segmentation Points by Using the GC Profile Method

  2014cites this paper
• Regulation of DNA replication timing

  2013cites this paper
• R/G-band boundaries: genomic instability and human disease.

  2013cites this paper
• Replication timing in a single human chromosome 11 transferred into the Chinese hamster ovary (CHO) cell line.

  2012cites this paper
• Spatiotemporal regulation of DNA replication in the human genome and its association with genomic instability and disease.

  2010cites this paper
• Methylation of DNA in cancer.

  2010cites this paper
• The genomic anchors of the human major histocompatibility complex

  2009cites this paper
• Replication timing and transcriptional control: beyond cause and effect.

  2009cites this paper
• An algorithm for detecting isochore boundaries using a new technique of GCDT

  2009cites this paper
• Replication timing as an epigenetic mark

  2009cites this paper
• Relationships between replication timing and GC content of cancer-related genes on human chromosomes 11q and 21q.

  2009cites this paper
• An Isochore Map of the Human Genome Based on the GCDT Method

  2009cites this paper
• Organization of the amplified type I interferon gene cluster and associated chromosome regions in the interphase nucleus of human osteosarcoma cells

  2009cites this paper
• Biological Implications of Isochore Boundaries in the Human Genome

  2008cites this paper
• Replication timing of extremely large genes on human chromosomes 11q and 21q.

  2008cites this paper
• Assignment of isochores for all completely sequenced vertebrate genomes using a consensus

  2008cites this paper
• Prediction of replication time zones at single nucleotide resolution in the human genome

  2008influential citation
• Early replication and the apoptotic pathway

  2007cites this paper
• p53-dependent change in replication timing of the human genome.

  2007cites this paper
• Pan-S replication patterns and chromosomal domains defined by genome-tiling arrays of ENCODE genomic areas.

  2007cites this paper
• Non-Denaturing Fluorescence in Situ Hybridization to Find Replication Origins in a Specific Genome Region on the DNA Fiber

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• Replication Timing Profile Reflects the Distinct Functional and Genomic Features of the MHC Class II Region

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• Isochores and replication time zones: a perfect match

  2007influential citation
• Isochore structures in the chicken genome

  2006cites this paper
• Chromosome organization and chromatin modification: influence on genome function and evolution

  2006cites this paper
• Genome-wide sequence and functional analysis of early replicating DNA in normal human fibroblasts

  2006cites this paper
• Strong Regional Heterogeneity in Base Composition Evolution on the Drosophila X Chromosome

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• A genome-wide distribution of 8-oxoguanine correlates with the preferred regions for recombination and single nucleotide polymorphism in the human genome.

  2006cites this paper
• Segmentation algorithm for DNA sequences.

  2005cites this paper
• Replication Timing of Human Chromosome 6

  2005cites this paper
• Regulation of replication at the R/G chromosomal band boundary and pericentromeric heterochromatin of mammalian cells.

  2005cites this paper
• An isochore transition zone in the NF1 gene region is a conserved landmark of chromosome structure and function.

  2005cites this paper
• Representing GC variation along eukaryotic chromosomes.

  2004cites this paper
• Molecular and cytological characterization of SspI-family repetitive sequence on the chicken W chromosome

  2004cites this paper
• Amplicons on human chromosome 11q are located in the early/late-switch regions of replication timing.

  2004cites this paper
• IsoFinder: computational prediction of isochores in genome sequences

  2004cites this paper
• Transitions in replication timing in a 340 kb region of human chromosomal R‐Band 1p36.1

  2004influential citation
• Isochore structures in the mouse genome.

  2004cites this paper
• GC/AT-content spikes as genomic punctuation marks.

  2004cites this paper
• Isochore Structures in the Genome of the Plant Arabidopsis thaliana

  2004cites this paper
• Distribution of meiotic recombination sites.

  2003cites this paper
• Using analytical ultracentrifugation to study compositional variation in vertebrate genomes

  2003cites this paper
• Distribution of meiotic recombination sites.

  2003cites this paper
• Replicating by the clock

  2003cites this paper
• Identification of isochore boundaries in the human genome using the technique of wavelet multiresolution analysis.

  2003cites this paper
• An isochore map of the human genome based on the Z curve method.

  2003cites this paper
• Chromosome-wide assessment of replication timing for human chromosomes 11q and 21q: disease-related genes in timing-switch regions.

  2002influential citation
• Isochore conservation between MHC regions on human chromosome 6 and mouse chromosome 17

  2002cites this paper
• Replication timing and transcriptional control: beyond cause and effect--part II.

  2002cites this paper
• Epigenomics: genome-wide study of methylation phenomena.

  2002influential citation
• Triplex-forming DNAs in the human interphase nucleus visualized in situ by polypurine/polypyrimidine DNA probes and antitriplex antibodies

  2002cites this paper
• Isochore chromosome maps of the human genome.

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• In silico chromosome staining: Reconstruction of Giemsa bands from the whole human genome sequence

  2002cites this paper
• Asynchronous replication and allelic exclusion in the immune system

  2001cites this paper
• Compositional heterogeneity within and among isochores in mammalian genomes. I. CsCl and sequence analyses.

  2001cites this paper
• The evolution of isochores

  2001cites this paper
• Identification of the cellular receptor for anthrax toxin

  2001cites this paper
• Compositional heterogeneity within and among isochores in mammalian genomes. II. Some general comments.

  2001cites this paper
• Local changes in GC/AT substitution biases and in crossover frequencies on Drosophila chromosomes.

  2001cites this paper
• Isochore chromosome maps of eukaryotic genomes.

  2001cites this paper
• Local rates of recombination are positively correlated with GC content in the human genome.

  2001cites this paper
• Genomic anatomy of a premier major histocompatibility complex paralogous region on chromosome 1q21-q22.

  2001cites this paper
• Long-range sequence composition mirrors linkage disequilibrium pattern in a 1.13 Mb region of human chromosome 22.

  2001cites this paper
• Distribution of polypurine/polypyrimidine tract sequences in the human MHC region and their possible functions

  2000cites this paper
• Intranuclear arrangement of human chromosome 12 correlates to large-scale replication domains

  2000cites this paper
• An isochore transition in the NF1 gene region coincides with a switch in the extent of linkage disequilibrium.

  2000cites this paper
• Non-B DNA structures spatially and sequence-specifically associated with individual centromeres in the human interphase nucleus

  2000cites this paper
• Cytosine deamination plays a primary role in the evolution of mammalian isochores.

  2000cites this paper
• Is a mutator analogous to the Ig hypermutator of the sheep ileal Peyer's patch active on MHC class I genes in the germ line?

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• Compositional bias in DNA.

  2000cites this paper
• THE HUMAN MAJOR HISTOCOMPATIBILITY COMPLEX: Lessons from the DNA Sequence

  2000cites this paper
• The evolution of base composition and phylogenetic inference.

  2000cites this paper
• Replication timing of the human X-inactivation center (XIC) region: correlation with chromosome bands.

  2000cites this paper
• Gene organisation, sequence variation and isochore structure at the centromeric boundary of the human MHC.

  1999cites this paper
• Molecular dynamics of MHC genesis unraveled by sequence analysis of the 1,796,938-bp HLA class I region.

  1999cites this paper
• The MHC quarterly report

  1999cites this paper
• Sequence organisation of the class II region of the human MHC

  1999cites this paper
• Genome sequencing analysis of the 1.8 Mb entire human MHC class I region

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• Asynchronous replication of imprinted genes is established in the gametes and maintained during development

  1999cites this paper
• Complete sequence and gene map of a human major histocompatibility complex

  1999cites this paper
• A kinetic proofreading mechanism for disentanglement of DNA by topoisomerases

  1999cites this paper
• Complete sequence and gene map of a human major histocompatibility complex. The MHC sequencing consortium.

  1999cites this paper
• Evidence that a single replication fork proceeds from early to late replicating domains in the IgH locus in a non-B cell line.

  1999cites this paper
• The Complete Nucleotide Sequence of the Human Immunoglobulin Heavy Chain Variable Region Locus

  1998cites this paper
• The gene-richest bands of human chromosomes replicate at the onset of the S-phase

  1998cites this paper
• Regulation of mammalian replication origin usage in Xenopus egg extract.

  1998cites this paper
• Replication timing properties across the pseudoautosomal region boundary and cytogenetic band boundaries on human distal Xp

  1998cites this paper
• High-resolution analysis of DNA replication domain organization across an R/G-band boundary

  1997influential citation
• Supplementary Text T1

  year unknowncites this paper