Phylogeography of the cyprinid Squalius aradensis and implications for conservation of the endemic freshwater fauna of southern Portugal

No abstract is available for this paper.

• Publication year

  2005

• Venue

  Molecular Ecology

• Publication date

  2005-04-28

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1111/j.1365-294X.2005.02569.xPMID 15910317
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• BOTTLENECK : A Computer Program for Detecting Recent Reductions in the Effective Population Size Using Allele Frequency Data

  2017influential reference
• Nested clade analysis: an extensively validated method for strong phylogeographic inference

  2008cited by this paper
• A natural mutation in rc reverts white-rice-pericarp to red and results in a new, dominant, wild-type allele: Rc-g

  2008cited by this paper
• At-sea distribution and scale-dependent foraging behaviour of petrels and albatrosses: a comparative study.

  2007cited by this paper
• Refugia, differentiation and postglacial migration in arctic‐alpine Eurasia, exemplified by the mountain avens (Dryas octopetala L.)

  2006cited by this paper
• Streams over mountains: influence of riparian connectivity on gene flow in the Pacific jumping mouse (Zapus trinotatus)

  2005cited by this paper
• Micro-Checker: Software for identifying and correcting genotyping errors in microsatellite data

  2004influential reference
• Phylogenetic and phylogeographic analysis of Iberian lynx populations.

  2004cited by this paper
• Phylogenetic relationships and biogeography of the genus Chondrostoma inferred from mitochondrial DNA sequences.

  2004influential reference
• PAUP* [Phylogenetic Analysis Using Parsimony (and Other Methods)]

  2004cited by this paper
• Variable microsatellite markers amplify across divergent lineages of cyprinid fishes (subfamily Leusicinae)

  2004cited by this paper
• Evolutionary and biogeographical patterns within Iberian populations of the genus Squalius inferred from molecular data.

  2003cited by this paper
• Microsatellite analysis of genetic population structure of the endangered cyprinid Anaecypris hispanica in Portugal: implications for conservation

  2003cited by this paper
• Phylogeography of the rock partridge (Alectoris graeca)

  2003cited by this paper
• Isolation and characterization of polymorphic microsatellite loci in the endangered Portuguese freshwater fish Squalius aradensis (Cyprinidae)

  2003cited by this paper
• Loss of microsatellite diversity and low effective population size in an overexploited population of New Zealand snapper (Pagrus auratus)

  2002influential reference
• Evolutionary Relationships of the Plagopterins (Teleostei: Cyprinidae) from Cytochrome b Sequences

  2002influential reference
• Estimating F-statistics.

  2002influential reference
• Late glacial history of the cold‐adapted freshwater fish Cottus gobio, revealed by microsatellites

  2002cited by this paper
• PAUP*: Phylogenetic analysis using parsimony (*and other methods), Version 4.0b10

  2002cited by this paper
• Detection of reduction in population size using data from microsatellite loci

  2001influential reference
• Using phylogeographic analyses of gene trees to test species status and processes

  2001cited by this paper
• River basin-related genetic structuring in an endangered fish species, Chondrostoma lusitanicum, based on mtDNA sequencing and RFLP analysis

  2001cited by this paper
• Speciation, hybrid zones and phylogeography — or seeing genes in space and time

  2001cited by this paper
• TCS: a computer program to estimate gene genealogies

  2000influential reference
• Coast line evolution in Portugal since the Last Glacial Maximum until present — a synthesis

  2000influential reference
• Biodiversity hotspots for conservation priorities

  2000cited by this paper
• GeoDis: a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes

  2000influential reference
• Nested clade and phylogeographic analyses of the chub, Leuciscus cephalus (Teleostei, cyprinidae), in Greece: implications for Balkan Peninsula biogeography.

  1999influential reference
• Computer note. BOTTLENECK: a computer program for detecting recent reductions in the effective size using allele frequency data

  1999influential reference
• Leuciscus torgalensis, and L. aradensis, two new cyprinids for Portuguese fresh waters

  1998cited by this paper
• MODELTEST: testing the model of DNA substitution

  1998influential reference
• Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and population history

  1998influential reference
• Genetic variability, population size and isolation of distinct populations in the freshwater fish Cottus gobio L.

  1998cited by this paper
• Distortion of allele frequency distributions provides a test for recent population bottlenecks.

  1998cited by this paper
• Combined Use of SMM and Non-SMM Methods to Infer Fine Structure and Evolutionary History of Closely Related Brook Charr (Salvelinus fontinalis, Salmonidea) Populations from Microsatellites

  1998cited by this paper
• Patterns of genetic divergence in Chondrostoma lusitanicum Collares‐Pereira, in intermittent Portuguese rivers

  1997cited by this paper
• Phylogenetic Relationships within GenusLeuciscus(Pisces, Cyprinidae) in Portuguese Fresh Waters, Based on Mitochondrial DNA CytochromebSequences

  1997cited by this paper
• Phylogenetic relationships within genus Leuciscus (Pisces, Cyprinidae) in Portuguese fresh waters, based on mitochondrial DNA cytochrome b sequences.

  1997cited by this paper
• Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance.

  1997influential reference
• GENETIX 4.05, logiciel sous Windows TM pour la génétique des populations.

  1996cited by this paper
• Genetic distances and reconstruction of phylogenetic trees from microsatellite DNA.

  1996cited by this paper
• A simple new method for estimating null allele frequency from heterozygote deficiency

  1996influential reference
• Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data.

  1996cited by this paper
• Mitochondrial DNA Polymorphism and a Connection Between Genetics and Demography of Relevance to Conservation

  1995cited by this paper
• Genetic variation and divergence of Leuciscus pyrenaicus and L. carolitertii (Pisces, Cyprinidae)

  1995cited by this paper
• GENEPOP (version 1.2): population genetic software for exact tests and ecumenicism

  1995influential reference
• Phylogenetic test of the molecular clock and linearized trees.

  1995cited by this paper
• Defining 'Evolutionarily Significant Units' for conservation.

  1994influential reference
• A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. IV. Nested analyses with cladogram uncertainty and recombination.

  1993influential reference
• Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees.

  1993influential reference
• Phylogenetic analysis of restriction site data.

  1993cited by this paper
• Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data.

  1992cited by this paper
• REAP: an integrated environment for the manipulation and phylogenic analysis of restriction data.

  1992cited by this paper
• A simple salting out procedure for extracting DNA from human nucleated cells.

  1988cited by this paper
• Molecular Evolutionary Genetics

  1987influential reference
• RARE ALLELES AS INDICATORS OF GENE FLOW

  1985influential reference
• ESTIMATING F‐STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE

  1984influential reference
• L'analyse des données

  1981cited by this paper
• Estimation of average heterozygosity and genetic distance from a small number of individuals.

  1978influential reference
• Estimation of the number of nucleotide sequences in mouse DNA complementary to messenger RNAs specifying a complete mouse immunoglobulin.

  1976influential reference
• PHYLOGENETIC ANALYSIS: MODELS AND ESTIMATION PROCEDURES

  1967cited by this paper
• Phylogenetic analysis. Models and estimation procedures.

  1967cited by this paper

• Prevalent Hybridisation Between Highly Divergent Iberian Chub Species Produces Contrasting Outcomes Across Different Geographic and Time Scales

  2025cites this paper
• Population Genetic Structure of Petroleuciscus borysthenicus (Kessler 1859) in Northwestern Türkiye Using Mitochondrial COX1 Gene

  2024cites this paper
• Quaternary geomorphological and climatic changes associated with the diversification of Iberian freshwater fishes: The case of the genus Cobitis (Cypriniformes, Cobitidae)

  2021cites this paper
• High genetic differentiation in the endemic and endangered freshwater fish Achondrostoma salmantinum Doadrio and Elvira, 2007 from Spain, as revealed by mitochondrial and SNP markers

  2021cites this paper
• Historical biogeography of the Iberian Peninsula: multilocus phylogeny and ancestral area reconstruction for the freshwater fish genus Squalius (Actinopterygii, Leuciscidae)

  2021cites this paper
• Genetic structure and demographic histories of two sympatric Culter species in eastern China

  2019cites this paper
• Population genomics data supports introgression between western Iberian Squalius freshwater fish species

  2019cites this paper
• Adaptation and convergence in circadian‐related genes in Iberian freshwater fish

  2019cites this paper
• Patterns of positive selection on the transcriptome of western Iberian Squalius fish: a new approach accounting for alternative splicing

  2019cites this paper
• Fish diversification at the pace of geomorphological changes: evolutionary history of western Iberian Leuciscinae (Teleostei: Leuciscidae) inferred from multilocus sequence data.

  2019cites this paper
• Evolutionary Histories and Futures of the Fishes of the Lake Eyre Basin

  2019cites this paper
• Adaptation and convergence in genes of the circadian system in Iberian Squalius freshwater species

  2019cites this paper
• Mate choice driven by genome in an allopolyploid fish complex

  2018cites this paper
• The population genomics of western Iberian Squalius freshwater fish species: a genotyping by sequencing approach

  2018influential citation
• Phylogeography and Population Genetic Analyses in the Iberian Toothcarp (Aphanius iberus Valenciennes, 1846) at Different Time Scales

  2018cites this paper
• Evolutionary pathways driven by female mate choice : the curious case of the squalius alburnoides allopolyploid fish complex

  2018influential citation
• Integrative inference of population history in the Ibero-Maghrebian endemic Pleurodeles waltl (Salamandridae).

  2017cites this paper
• Aplicación de técnicas moleculares en biología evolutiva: los peces continentales de Europa y México como caso de estudio

  2017cites this paper
• European Lampreys: New Insights on Postglacial Colonization, Gene Flow and Speciation

  2016cites this paper
• Cenozoic tectonic and climatic events in southern Iberian Peninsula: Implications for the evolutionary history of freshwater fish of the genus Squalius (Actinopterygii, Cyprinidae).

  2016cites this paper
• Ecology and conservation of Garra ghorensis, an endangered freshwater fish in Jordan

  2016cites this paper
• Comparative pattern of genetic structure in two Mediterranean killifishes Aphanius fasciatus and Aphanius iberus inferred from both mitochondrial and nuclear data.

  2015cites this paper
• Glacial refuges for three‐spined stickleback in the Iberian Peninsula: mitochondrial DNA phylogeography

  2015cites this paper
• Phylogeography and current patterns of genetic diversity and structure of the Mediterranean pond turtle

  2014cites this paper
• Metapopulations in temporary streams - the role of drought-flood cycles in promoting high genetic diversity in a critically endangered freshwater fish and its consequences for the future.

  2014cites this paper
• Cannabioids as disease modifiers in multiple sclerosis and amyotrophic lateral sclerosis Los cannabinoides como agentes modificadores de la enfermedad en la esclerosis múltiple y la esclerosis lateral amiotrófica MEMORIA PARA OPTAR AL GRADO DE DOCTORA PRESENTADA POR

  2014cites this paper
• Evolutionary history and population genetics of a cyprinid fish (Iberochondrostoma olisiponensis) endangered by introgression from a more abundant relative

  2014cites this paper
• Genetic diversity and population history of the endangered killifish Aphanius baeticus.

  2014cites this paper
• Genetic diversity and effective size of Atlantic sturgeon, Acipenser oxyrhinchus oxyrhinchus river spawning populations estimated from the microsatellite genotypes of marine-captured juveniles

  2014cites this paper
• Genetic Diversity and Population History of the Endangered Killifish Aphanius baeticus

  2014influential citation
• Large-scale population genetic structure in Bonelli's Eagle Aquila fasciata

  2013cites this paper
• During the first status survey in 1987 , the Umpqua Chub was broadly distributed between Elk Creek and the South Umpqua River near the Umpqua National Forest boundary

  2013cites this paper
• Comparative cytogenetics of two endangered leuciscine fish, Squalius aradensis and S. torgalensis (Teleostei, Cyprinidae), from the Iberian Peninsula

  2013cites this paper
• Timing of Population Fragmentation in a Vulnerable Minnow, the Umpqua Chub, and the Role of Nonnative Predators

  2013cites this paper
• Assessing the impact of environmental changes in endemic freshwater fish populations through the temporal analysis of genetic diversity patterns

  2013cites this paper
• Genetic diversity and structure of potamodromous Opsaridium microlepis (Günther) populations in the inlet rivers of Lake Malawi

  2013influential citation
• Assessing inter-drainage connections: patterns of genetic diversity in an Iberian cyprinid fish

  2013cites this paper
• A phylogeographic investigation of the hybrid origin of a species of swordtail fish from Mexico

  2012influential citation
• Population genetic structure in the Iberian cyprinid fish Iberochondrostoma lemmingii (Steindachner, 1866): disentangling species fragmentation and colonization processes

  2012cites this paper
• Phylogeography of isolated freshwater three-spined stickleback Gasterosteus aculeatus populations in the Adriatic Sea basin.

  2012cites this paper
• Complex phylogeography in the Southern Smooth Snake (Coronella girondica) supported by mtDNA sequences

  2012cites this paper
• Analyses of Genetic Variation in Populations of Oregon Chub, a Threatened Floodplain Minnow in a Highly Altered Environment

  2012cites this paper
• Phylogeography and demographic history of Lacerta lepida in the Iberian Peninsula: multiple refugia, range expansions and secondary contact zones

  2011cites this paper
• Genomic insights from the Squalius alburnoides complex in the confined Quarteira drainage population: what's new?

  2011cites this paper
• A landscape genetics approach to a contact zone of two salamandra salamandra subspecies in southwest Portugal

  2011cites this paper
• Evidence for multiple historical colonizations of an endoreic drainage basin by an Australian freshwater fish.

  2011cites this paper
• Low cytochrome b variation in bream Abramis brama.

  2011cites this paper
• Brown trout (Salmo trutta) invasiveness: plasticity in life-history is more important than genetic variability

  2010cites this paper
• Introgressive hybridization between two Iberian endemic cyprinid fish: a comparison between two independent hybrid zones

  2010cites this paper
• Migration patterns counteract seasonal isolation of Squalius torgalensis, a critically endangered freshwater fish inhabiting a typical Circum-Mediterranean small drainage

  2010influential citation
• Comparisons of the genetic structure of Squalius populations (Teleostei, Cyprinidae) from rivers with contrasting histories, drainage areas and climatic conditions based on two molecular markers.

  2010cites this paper
• Conservation genetics of a critically endangered Iberian minnow: evidence of population decline and extirpations

  2010cites this paper
• Shallow phylogeographic structuring of Vimba vimba across Europe suggests two distinct refugia during the last glaciation.

  2009cites this paper
• Threatened fishes of the world: Squalius torgalensis (Coelho, Bogutskaya, Rodrigues & Collares-Pereira, 1998) (Cyprinidae)

  2009cites this paper
• Phylogeny and biogeography of the genus Pseudobarbus (Cyprinidae): shedding light on the drainage history of rivers associated with the Cape Floristic Region.

  2009influential citation
• High levels of population subdivision in a morphologically conserved Mediterranean toad (Alytes cisternasii) result from recent, multiple refugia: evidence from mtDNA, microsatellites and nuclear genealogies

  2009influential citation
• Pleistocene divergence of Dinaric Drusus endemics (Trichoptera, Limnephilidae) in multiple microrefugia within the Balkan Peninsula

  2009cites this paper
• Threatened fishes of the world: Squalius aradensis (Coelho, Bogutskaya, Rodrigues & Collares-Pereira, 1998) (Cyprinidae)

  2009influential citation
• Diversification within glacial refugia: tempo and mode of evolution of the polytypic fish Barbus sclateri

  2009influential citation
• Speciation and Phylogeography of Opsariichthys bidens (Pisces: Cypriniformes: Cyprinidae) in China: Analysis of the Cytochrome b Gene of mtDNA from Diverse Populations

  2009cites this paper
• Biogeography of Iberian freshwater fishes revisited: the roles of historical versus contemporary constraints

  2009cites this paper
• International Standardization of Common Names for Iberian Endemic Freshwater Fishes

  2009cites this paper
• Population genetic structure of indigenous ornamental teleosts, puntius denisonii and puntius chalakkudiensis from the western ghats, India

  2009cites this paper
• Inference of admixture and population size changes in structured populations with applications to conservation genetics

  2009influential citation
• in the Iberian endangered Iberochondrostoma lemmingii (Steindachner, 1866)

  2009cites this paper
• New records of Eunapius fragilis (Leidy, 1851) and Ephydatia fluviatilis (Linnaeus, 1759) (Porifera, Spongillidae) in Ebro River Basin (N Spain)

  2009cites this paper
• Mediterran, kontinental und arkto-alpin: Die drei biogeographischen Grundmuster Europas und des Mittelmeerraumes am Beispiel von Schmetterlingen

  2009cites this paper
• Chromosomal evidence of population subdivision in the freshwater fish Leporinus elongatus in the Upper Paraná River basin

  2008cites this paper
• Molecular systematics, phylogeny and biogeography of roaches (Rutilus, Teleostei, Cyprinidae).

  2008cites this paper
• Genetic structure and signature of population decrease in the critically endangered freshwater cyprinid Chondrostoma lusitanicum

  2008influential citation
• Phylogeographical and speciation patterns in subterranean worm lizards of the genus Blanus (Amphisbaenia: Blanidae)

  2007cites this paper
• Effects of multi‐year droughts on fish assemblages of seasonally drying Mediterranean streams

  2007cites this paper
• Comparative phylogeography of endemic cyprinids in the south-west Iberian Peninsula: evidence for a new ichthyogeographic area

  2007cites this paper
• Broad‐ to fine‐scale population genetic patterning in the smallmouth bass Micropterus dolomieu across the Laurentian Great Lakes and beyond: an interplay of behaviour and geography

  2007influential citation
• Human Impacts on Drainages of the Mesa Central, Mexico, and Its Genetic Effects on an Endangered Fish, Zoogoneticus quitzeoensis

  2007cites this paper
• Phylogeography of the rare Balkan endemic Martino's vole, Dinaromys bogdanovi, reveals strong differentiation within the western Balkan Peninsula

  2007cites this paper
• Molecular biogeography of Europe: Pleistocene cycles and postglacial trends

  2007cites this paper
• Reading the history of a hybrid fish complex from its molecular record.

  2007influential citation
• Molecular characterization of human bone marrow stromal cells supporting early B lymphopoiesis

  2006cites this paper
• Microsatellite DNA analysis of coastal populations of bull trout (Salvelinus confluentus) in British Columbia: zoogeographic implications and its application to recreational fishery management

  2006cites this paper
• Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers.

  2006cites this paper
• Genetic differentiation and reproductive isolation in a Cyprinodon fish species flock from Laguna Chichancanab, Mexico.

  2006cites this paper
• Evidence of extensive mitochondrial introgression with nearly complete substitution of the typical Squalius pyrenaicus‐like mtDNA of the Squalius alburnoides complex (Cyprinidae) in an independent Iberian drainage

  2006cites this paper
• Genetic analysis reveals two distinct Sacramento splittail (Pogonichthys macrolepidotus) populations

  2006influential citation
• Reproductive success of nuclear nonhybrid males of Squalius alburnoides hybridogenetic complex (Teleostei, Cyprinidae): an example of interplay between female choice and ecological pressures?

  2006cites this paper
• Spatial Variation in Fish Assemblages across small Mediterranean Drainages: Effects of Habitat and Landscape Context

  2006cites this paper
• GLOBAL PLANT BIODIVERSITY IS MAPPED

  year unknowncites this paper
• Distributed under Creative Commons Cc-by 4.0 Broad-scale Sampling of Primary Freshwater Fish Populations Reveals the Role of Intrinsic Traits, Inter-basin Connectivity, Drainage Area and Latitude on Shaping Contemporary Patterns of Genetic Diversity

  year unknowncites this paper