Isolation and characterization of a β-propeller gene containing phosphobacterium Bacillus subtilis strain KPS-11 for growth promotion of potato (Solanum tuberosum L.)

Phosphate-solubilizing and phytate-mineralizing bacteria collectively termed as phosphobacteria provide a sustainable approach for managing P-deficiency in agricultural soils by supplying inexpensive phosphate to plants. A phosphobacterium Bacillus subtilis strain KPS-11 (Genbank accession no. KP006655) was isolated from potato (Solanum tuberosum L.) rhizosphere and characterized for potato plant growth promoting potential. The strain utilized both Ca-phosphate and Na-phytate in vitro and produced 6.48 μg mL-1 indole-3-acetic acid in tryptophan supplemented medium. P-solubilization after 240 h was 66.4 μg mL-1 alongwith the production of 19.3 μg mL-1 gluconic acid and 5.3 μg mL-1 malic acid. The extracellular phytase activity was higher (4.3 × 10-10 kat mg-1 protein) than the cell-associated phytase activity (1.6 × 10-10 kat mg-1 protein). B. subtilis strain KPS-11 utilized 40 carbon sources and showed resistance against 20 chemicals in GENIII micro-plate system demonstrating its metabolic potential. Phytase-encoding gene β-propeller (BPP) showed 92% amino acid similarity to BPP from B. subtilis (accession no.WP_014114128.1) and 83% structural similarity to BPP from B. subtilis (accession no 3AMR_A). Potato inoculation with B. subtilis strain KPS-11 increased the root/shoot length and root/shoot weight of potato as compared to non-inoculated control plants. Moreover, rifampicin-resistant derivative of KPS-11 were able to survive in the rhizosphere and on the roots of potato up to 60 days showing its colonization potential. The study indicates that B. subtilis strain KPS-11 can be a potential candidate for development of potato inoculum in P-deficient soils.

• Publication year

  2015

• Venue

  Frontiers in Microbiology

• Publication date

  2015-06-09

• Fields of study

  Agricultural and Food Sciences, Medicine, Biology, Environmental Science

• Identifiers
  DOI 10.3389/fmicb.2015.00583PMID 26106383PMCID 4460431
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• Potato inoculation with Bacillus subtilis strain KPS-11 increased root and shoot length and weight, and the strain persisted on roots and in the rhizosphere for up to 60 days.

  Confidence 0.96

  박진우 (dztg5apj7m) extractionB (s683577b42) reviewKiller Whale (322360f1c1) review
• GENIII micro-plate profiling showed that Bacillus subtilis strain KPS-11 used 40 carbon sources and resisted 20 chemicals.

  Confidence 0.97

  박진우 (dztg5apj7m) extractionB (s683577b42) reviewKiller Whale (322360f1c1) review
• The β-propeller gene in Bacillus subtilis strain KPS-11 encoded a phytase-associated protein closely related to known Bacillus subtilis β-propeller sequences.

  Confidence 0.92

  박진우 (dztg5apj7m) extractionB (s683577b42) reviewKiller Whale (322360f1c1) review
• Bacillus subtilis strain KPS-11 solubilized phosphate and mineralized phytate in vitro, with accompanying gluconic acid production.

  Confidence 0.98

  박진우 (dztg5apj7m) extractionB (s683577b42) reviewKiller Whale (322360f1c1) review

• bacillus subtilis strain kps-11

  bacterial strains

  A phosphobacterium isolated from the potato rhizosphere and used as the test strain in this work.

  Aliases: KPS-11

  박진우 (dztg5apj7m) extractionB (s683577b42) reviewKiller Whale (322360f1c1) review
• geniii micro-plate system

  assays

  A phenotype microarray assay used to profile carbon-source utilization and chemical resistance.

  Aliases: GENIII

  박진우 (dztg5apj7m) extractionB (s683577b42) reviewKiller Whale (322360f1c1) review
• gluconic acid

  metabolites

  An organic acid detected in the culture medium during phosphate-solubilizing activity.

  박진우 (dztg5apj7m) extractionB (s683577b42) reviewKiller Whale (322360f1c1) review
• phosphate solubilization

  phenotypes

  The in vitro process by which the strain released soluble phosphate from insoluble calcium phosphate.

  Aliases: P-solubilization

  박진우 (dztg5apj7m) extractionB (s683577b42) reviewKiller Whale (322360f1c1) review
• phytate mineralization

  phenotypes

  The in vitro breakdown of Na-phytate by the strain, measured through phytase activity.

  Aliases: phytase activity

  박진우 (dztg5apj7m) extractionB (s683577b42) reviewKiller Whale (322360f1c1) review
• potato inoculation

  treatments

  The experimental application of the bacterial strain to potato plants to assess growth promotion.

  박진우 (dztg5apj7m) extractionB (s683577b42) reviewKiller Whale (322360f1c1) review
• rhizosphere colonization

  colonization outcomes

  The persistence of the rifampicin-resistant derivative on potato roots and in surrounding soil over time.

  박진우 (dztg5apj7m) extractionB (s683577b42) reviewKiller Whale (322360f1c1) review
• β-propeller gene

  genes

  The phytase-encoding β-propeller gene identified in strain KPS-11 and compared with known Bacillus sequences.

  Aliases: BPP

  박진우 (dztg5apj7m) extractionB (s683577b42) reviewKiller Whale (322360f1c1) review

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