DOMPLOT: a program to generate schematic diagrams of the structural domain organization within proteins, annotated by ligand contacts.

No abstract is available for this paper.

• Publication year

  1999

• Venue

  Protein Engineering

• Publication date

  1999-05-01

• Fields of study

  Biology, Medicine, Computer Science

• Identifiers
  DOI 10.1093/PROTEIN/12.5.375PMID 10360977
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Three-dimensional structure analysis of PROSITE patterns.

  1999influential reference
• SMART, a simple modular architecture research tool: identification of signaling domains.

  1998cited by this paper
• Sequences annotated by structure: a tool to facilitate the use of structural information in sequence analysis.

  1998influential reference
• Domain assignment for protein structures using a consensus approach: Characterization and analysis

  1998cited by this paper
• The PROSITE database, its status in 1997

  1997cited by this paper
• XDOM, a graphical tool to analyse domain arrangements in any set of protein sequences

  1997cited by this paper
• CATH--a hierarchic classification of protein domain structures.

  1997cited by this paper
• Structure‐function relations for old yellow enzyme

  1995cited by this paper
• Continuous and discontinuous domains: An algorithm for the automatic generation of reliable protein domain definitions

  1995cited by this paper
• A procedure for detecting structural domains in proteins

  1995cited by this paper
• Identification and analysis of domains in proteins.

  1995cited by this paper
• Old yellow enzyme at 2 A resolution: overall structure, ligand binding, and comparison with related flavoproteins.

  1994influential reference
• Satisfying hydrogen bonding potential in proteins.

  1994cited by this paper
• Parser for protein folding units

  1994cited by this paper
• α/β Barrel evolution and the modular assembly of enzymes: Emerging trends in the flavin oxidase/dehydrogenase family

  1994cited by this paper
• Structural conservation in parallel beta/alpha-barrel enzymes that catalyze three sequential reactions in the pathway of tryptophan biosynthesis.

  1991cited by this paper
• A program to produce both detailed and schematic plots of protein structures

  1991cited by this paper
• The TIM barrel—the most frequently occurring folding motif in proteins

  1991cited by this paper
• Spinach glycolate oxidase and yeast flavocytochrome b2 are structurally homologous and evolutionarily related enzymes with distinctly different function and flavin mononucleotide binding.

  1991cited by this paper
• The evolution of a/ barrel enzymes

  1990cited by this paper
• Molecular structure of flavocytochrome b2 at 2.4 A resolution.

  1990cited by this paper
• The evolution of alpha/beta barrel enzymes.

  1990cited by this paper
• Refined structure of spinach glycolate oxidase at 2 A resolution.

  1989cited by this paper
• Protein structure alignment.

  1989cited by this paper
• Proteins

  1987cited by this paper
• PostScript Language Reference Manual

  1985cited by this paper
• Biopolymers

  1984cited by this paper
• Dictionary of protein secondary structure: Pattern recognition of hydrogen‐bonded and geometrical features

  1983cited by this paper
• The anatomy and taxonomy of protein structure.

  1981cited by this paper
• The Protein Data Bank: a computer-based archival file for macromolecular structures.

  1977cited by this paper
• Nucleic Acid

  1947influential reference

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  2017cites this paper
• Comparative visualization of protein secondary structures

  2017cites this paper
• PDBCirclePlot: A Novel Visualization Method for Protein Structures

  2014cites this paper
• Protein structure prediction.

  2008cites this paper
• 2D molecular graphics: a flattened world of chemistry and biology

  2008cites this paper
• PDBSiteScan: a program for searching for active, binding and posttranslational modification sites in the 3D structures of proteins

  2004cites this paper
• Conserved structural modules and bonding networks in isopenicillin N synthase related non-haem iron-dependent oxygenases and oxidases

  2003cites this paper
• Protein structure prediction.

  2001cites this paper
• The CATH Dictionary of Homologous Superfamilies (DHS): a consensus approach for identifying distant structural homologues.

  2000cites this paper
• Using the CATH domain database to assign structures and functions to the genome sequences.

  2000cites this paper
• Evolution of protein function, from a structural perspective.

  1999cites this paper
• From protein structure to function.

  1999cites this paper