Transcriptome Dynamics during the Transition from Anaerobic Photosynthesis to Aerobic Respiration in Rhodobacter sphaeroides 2.4.1

No abstract is available for this paper.

• Publication year

  2007

• Venue

  Journal of Bacteriology

• Publication date

  2007-10-26

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1128/JB.01375-07PMID 17965166PMCID PMC2223731
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• A Complete Set of Flagellar Genes Acquired by Horizontal Transfer Coexists with the Endogenous Flagellar System in Rhodobacter sphaeroides

  2007cited by this paper
• Transition of Escherichia coli from Aerobic to Micro-aerobic Conditions Involves Fast and Slow Reacting Regulatory Components*

  2007cited by this paper
• Dominant Role of the cbb3 Oxidase in Regulation of Photosynthesis Gene Expression through the PrrBA System in Rhodobacter sphaeroides 2.4.1

  2007cited by this paper
• The AppA and PpsR Proteins from Rhodobacter sphaeroides Can Establish a Redox-Dependent Signal Chain but Fail To Transmit Blue-Light Signals in Other Bacteria

  2007cited by this paper
• Analysis of hemF Gene Function and Expression in Rhodobacter sphaeroides 2.4.1

  2006cited by this paper
• Whole-Genome Transcriptional Analysis of Chemolithoautotrophic Thiosulfate Oxidation by Thiobacillus denitrificans under Aerobic versus Denitrifying Conditions

  2006cited by this paper
• The photosynthetic deficiency due to puhC gene deletion in Rhodobacter capsulatus suggests a PuhC protein-dependent process of RC/LH1/PufX complex reorganization.

  2006cited by this paper
• Comparison of aerobic and photosynthetic Rhodobacter sphaeroides 2.4.1 proteomes.

  2006cited by this paper
• The Pseudomonas aeruginosa Universal Stress Protein PA4352 Is Essential for Surviving Anaerobic Energy Stress

  2006cited by this paper
• Anaerobic Survival of Pseudomonas aeruginosa by Pyruvate Fermentation Requires an Usp-Type Stress Protein

  2006cited by this paper
• Activity of Rhodobacter sphaeroides RpoHII, a Second Member of the Heat Shock Sigma Factor Family

  2006influential reference
• Two Chemosensory Operons of Rhodobacter sphaeroides Are Regulated Independently by Sigma 28 and Sigma 54

  2006cited by this paper
• Escherichia coli Transcriptome Dynamics during the Transition from Anaerobic to Aerobic Conditions*

  2006cited by this paper
• Transcriptional Specificity of RpoN1 and RpoN2 Involves Differential Recognition of the Promoter Sequences and Specific Interaction with the Cognate Activator Proteins*

  2006cited by this paper
• How Escherichia coli and Saccharomyces cerevisiae build Fe/S proteins.

  2005cited by this paper
• The flagellar hierarchy of Rhodobacter sphaeroides is controlled by the concerted action of two enhancer‐binding proteins

  2005influential reference
• Transcriptome Analysis of the Rhodobacter sphaeroides PpsR Regulon: PpsR as a Master Regulator of Photosystem Development

  2005cited by this paper
• The puhE gene of Rhodobacter capsulatus is needed for optimal transition from aerobic to photosynthetic growth and encodes a putative negative modulator of bacteriochlorophyll production.

  2005cited by this paper
• C‐di‐GMP: the dawning of a novel bacterial signalling system

  2005cited by this paper
• Regulatory oversight of the iron trade: posttranscriptional regulation in yeast.

  2005cited by this paper
• The PuhB Protein of Rhodobacter capsulatus Functions in Photosynthetic Reaction Center Assembly with a Secondary Effect on Light-Harvesting Complex 1

  2005cited by this paper
• Combining microarray and genomic data to predict DNA binding motifs.

  2005cited by this paper
• A transcriptional response to singlet oxygen, a toxic byproduct of photosynthesis.

  2005cited by this paper
• Transcriptome and Physiological Responses to Hydrogen Peroxide of the Facultatively Phototrophic Bacterium Rhodobacter sphaeroides

  2005influential reference
• Light‐dependent regulation of photosynthesis genes in Rhodobacter sphaeroides 2.4.1 is coordinately controlled by photosynthetic electron transport via the PrrBA two‐component system and the photoreceptor AppA

  2005cited by this paper
• Interacting regulatory networks in the facultative photosynthetic bacterium, Rhodobacter sphaeroides 2.4.1.

  2005cited by this paper
• RegB/RegA, a Highly Conserved Redox-Responding Global Two-Component Regulatory System

  2004cited by this paper
• Construction and Validation of the Rhodobacter sphaeroides 2.4.1 DNA Microarray: Transcriptome Flexibility at Diverse Growth Modes

  2004cited by this paper
• Singlet oxygen production in photosynthesis.

  2004cited by this paper
• Oxygen intervention in the regulation of gene expression: the photosynthetic bacterial paradigm

  2004cited by this paper
• Effects of Oxygen and Light Intensity on Transcriptome Expression in Rhodobacter sphaeroides 2.4.1

  2004cited by this paper
• Regulators of nonsulfur purple phototrophic bacteria and the interactive control of CO2 assimilation, nitrogen fixation, hydrogen metabolism and energy generation.

  2004cited by this paper
• Cyclic di-GMP as a bacterial second messenger.

  2004cited by this paper
• Oxidative Stress Inactivates Cobalamin-Independent Methionine Synthase (MetE) in Escherichia coli

  2004cited by this paper
• Responses of the Rhodobacter sphaeroides Transcriptome to Blue Light under Semiaerobic Conditions

  2004cited by this paper
• Protein Thiol Modifications Visualized In Vivo

  2004cited by this paper
• The home stretch, a first analysis of the nearly completed genome of Rhodobacter sphaeroides 2.4.1

  2004cited by this paper
• The puf operon region of Rhodobacter sphaeroides

  2004cited by this paper
• Digging deeper: uncovering genetic loci which modulate photosynthesis gene expression in Rhodobacter sphaeroides 2.4.1.

  2003cited by this paper
• A Second and Unusual pucBA Operon of Rhodobacter sphaeroides 2.4.1: Genetics and Function of the Encoded Polypeptides

  2003cited by this paper
• Identification and in vivo characterization of PpaA, a regulator of photosystem formation in Rhodobacter sphaeroides.

  2003cited by this paper
• Bacterial iron homeostasis.

  2003influential reference
• A four‐tiered transcriptional regulatory circuit controls flagellar biogenesis in Pseudomonas aeruginosa

  2003cited by this paper
• The four different sigma(54) factors of Rhodobacter sphaeroides are not functionally interchangeable.

  2002cited by this paper
• The four different σ54 factors of Rhodobacter sphaeroides are not functionally interchangeable

  2002cited by this paper
• A single flavoprotein, AppA, integrates both redox and light signals in Rhodobacter sphaeroides

  2002cited by this paper
• AppA is a blue light photoreceptor that antirepresses photosynthesis gene expression in Rhodobacter sphaeroides.

  2002cited by this paper
• Regulation of flagellar assembly.

  2002cited by this paper
• Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection.

  2001cited by this paper
• Ordering Genes in a Flagella Pathway by Analysis of Expression Kinetics from Living Bacteria

  2001cited by this paper
• 1-Deoxy-d-Xylulose 5-Phosphate Synthase, the Gene Product of Open Reading Frame (ORF) 2816 and ORF 2895 inRhodobacter capsulatus

  2001cited by this paper
• Mobile Cytochrome c2 and Membrane-Anchored Cytochrome cy Are Both Efficient Electron Donors to the cbb3- andaa3-Type Cytochrome cOxidases during Respiratory Growth of Rhodobacter sphaeroides

  2001cited by this paper
• Generalized approach to the regulation and integration of gene expression

  2001cited by this paper
• The novel σ54‐ and σ28‐dependent flagellar gene transcription hierarchy of Vibrio cholerae

  2001cited by this paper
• Dynamic spatial regulation in the bacterial cell.

  2000cited by this paper
• TspO of Rhodobacter sphaeroides A STRUCTURAL AND FUNCTIONAL MODEL FOR THE MAMMALIAN PERIPHERAL BENZODIAZEPINE RECEPTOR*

  2000cited by this paper
• Coupling of Flagellar Gene Expression to Flagellar Assembly in Salmonella enterica Serovar Typhimurium andEscherichia coli

  2000cited by this paper
• Respiratory pathways of Rhodobacter sphaeroides 2.4.1(T): identification and characterization of genes encoding quinol oxidases.

  2000cited by this paper
• Redox signaling: globalization of gene expression.

  2000cited by this paper
• Redox signaling: globalization of gene expression

  2000cited by this paper
• Regulatory circuits in Caulobacter.

  2000cited by this paper
• TspO of Rhodobacter sphaeroides

  2000cited by this paper
• The membrane-attached electron carrier cytochrome cy from Rhodobacter sphaeroides is functional in respiratory but not in photosynthetic electron transfer.

  1999cited by this paper
• A Novel Mechanism for the Regulation of Photosynthesis Gene Expression by the TspO Outer Membrane Protein of Rhodobacter sphaeroides 2.4.1*

  1999cited by this paper
• Genetic Complementation and Kinetic Analyses ofRhodobacter capsulatus ORF1696 Mutants Indicate that the ORF1696 Protein Enhances Assembly of the Light-Harvesting I Complex

  1998cited by this paper
• Control of Photosystem Formation inRhodobacter sphaeroides

  1998cited by this paper
• Topological Model of the Rhodobacter capsulatusLight-Harvesting Complex I Assembly Protein LhaA (Previously Known as ORF1696)

  1998cited by this paper
• Oxygen Regulation of the ccoN Gene Encoding a Component of the cbb3 Oxidase inRhodobacter sphaeroides 2.4.1T: Involvement of the FnrL Protein

  1998cited by this paper
• The oxygen‐responsive transcriptional regulator FNR of Escherichia coli : the search for signals and reactions

  1997cited by this paper
• Cell cycle regulation of flagellar genes

  1997cited by this paper
• Molecular genetic analysis suggesting interactions between AppA and PpsR in regulation of photosynthesis gene expression in Rhodobacter sphaeroides 2.4.1

  1997cited by this paper
• Genetic evidence that PpsR from Rhodobacter sphaeroides 2.4.1 functions as a repressor of puc and bchF expression

  1995cited by this paper
• A Sensory Transducer Homologous to the Mammalian Peripheral-type Benzodiazepine Receptor Regulates Photosynthetic Membrane Complex Formation in Rhodobacter sphaeroides 2.4.1 (*)

  1995cited by this paper
• appA, a novel gene encoding a trans-acting factor involved in the regulation of photosynthesis gene expression in Rhodobacter sphaeroides 2.4.1

  1995cited by this paper
• Aerobic and anaerobic regulation in Rhodobacter sphaeroides 2.4.1: the role of the fnrL gene

  1995cited by this paper
• Sequencing, chromosomal inactivation, and functional expression in Escherichia coli of ppsR, a gene which represses carotenoid and bacteriochlorophyll synthesis in Rhodobacter sphaeroides

  1994influential reference
• prrA, a putative response regulator involved in oxygen regulation of photosynthesis gene expression in Rhodobacter sphaeroides

  1994cited by this paper
• Role of subunit IV in the cytochrome b-c1 complex from Rhodobacter sphaeroides.

  1994cited by this paper
• Isolation and characterization of the nifUSVW-rpoN gene cluster from Rhodobacter sphaeroides

  1992cited by this paper
• cis-acting regulatory elements involved in oxygen and light control of puc operon transcription in Rhodobacter sphaeroides

  1992cited by this paper
• Roles of CfxA, CfxB, and external electron acceptors in regulation of ribulose 1,5-bisphosphate carboxylase/oxygenase expression in Rhodobacter sphaeroides

  1990cited by this paper
• Posttranscriptional control of puc operon expression of B800-850 light-harvesting complex formation in Rhodobacter sphaeroides

  1989cited by this paper
• Expression of the Rhodobacter sphaeroides cytochrome c2 structural gene

  1989cited by this paper
• Phenotypic and genetic characterization of cytochrome c2 deficient mutants of Rhodobacter sphaeroides.

  1988cited by this paper
• Molecular genetics of photosynthetic membrane biosynthesis in Rhodobacter sphaeroides.

  1988cited by this paper
• Cloning, DNA sequence, and expression of the Rhodobacter sphaeroides light-harvesting B800-850-alpha and B800-850-beta genes

  1987cited by this paper
• Regulation of Escherichia coli fumarate reductase (frdABCD) operon expression by respiratory electron acceptors and the fnr gene product

  1987cited by this paper
• Origin of the mRNA stoichiometry of the puf operon in Rhodobacter sphaeroides.

  1986cited by this paper
• Characterization of light-harvesting mutants of Rhodopseudomonas sphaeroides. I. Measurement of the efficiency of energy transfer from light-harvesting complexes to the reaction center.

  1985cited by this paper
• Biosynthesis of the photosynthetic membranes of rhodopseudomonas sphaeroides

  1983cited by this paper
• The lipids and fatty acid metabolism of photosynthetic bacteria.

  1965cited by this paper
• Kinetic studies of pigment synthesis by non-sulfur purple bacteria.

  1957cited by this paper
• Cloning, DNA Sequence, and Expression of the Rhodobacter sphaeroides Light-Harvesting B800-850-ct and B800-850-4 Genes

  year unknowncited by this paper

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