Effect of minor allele frequency on the number of single nucleotide polymorphisms needed for accurate parentage assignment: A methodology illustrated using Atlantic salmon

No abstract is available for this paper.

• Publication year

  2018

• Venue

  Aquaculture Research

• Publication date

  2018-03-01

• Fields of study

  Biology, Environmental Science

• Identifiers
  DOI 10.1111/ARE.13566
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

• A workflow used to design low density SNP panels for parentage assignment and traceability in aquaculture species and its validation in Atlantic salmon

  2017cited by this paper
• Development and validation of a SNP panel for parentage assignment in rainbow trout

  2016cited by this paper
• How many markers are enough? Factors influencing parentage testing in different livestock populations.

  2016cited by this paper
• The Atlantic salmon genome provides insights into rediploidization

  2016cited by this paper
• A genome scan for selection signatures comparing farmed Atlantic salmon with two wild populations: Testing colocalization among outlier markers, candidate genes, and quantitative trait loci for production traits

  2016cited by this paper
• Inheritance of high-resolution melting profiles in assays targeting single nucleotide polymorphisms in protein-coding sequences of the Pacific oyster Crassostrea gigas: Implications for parentage assignment of experimental and commercial broodstocks

  2015cited by this paper
• A comparison of single nucleotide polymorphism and microsatellite markers for analysis of parentage and kinship in a cooperatively breeding bird

  2015cited by this paper
• Practical Considerations of Molecular Parentage Analysis in Fish

  2014cited by this paper
• Second-generation PLINK: rising to the challenge of larger and richer datasets

  2014cited by this paper
• Cytoplasmic 5′-3′ exonuclease Xrn1p is also a genome-wide transcription factor in yeast

  2013cited by this paper
• Chromosomal differences between European and North American Atlantic salmon discovered by linkage mapping and supported by fluorescence in situ hybridization analysis

  2012cited by this paper
• An empirical comparison of SNPs and microsatellites for parentage and kinship assignment in a wild sockeye salmon (Oncorhynchus nerka) population

  2011cited by this paper
• A single nucleotide polymorphism set for paternal identification to reduce the costs of trait recording in commercial pig breeding.

  2011cited by this paper
• Sweepstakes Reproductive Success in Highly Fecund Marine Fish and Shellfish: A Review and Commentary

  2011cited by this paper
• Sampling properties of the heterozygote-excess estimator of the effective number of breeders

  2010cited by this paper
• Estimation of census and effective population sizes: the increasing usefulness of DNA-based approaches

  2010cited by this paper
• Effectiveness of microsatellite and SNP markers for parentage and identity analysis in species with low genetic diversity: the case of European bison

  2009cited by this paper
• Estimation of the number of SNP genetic markers required for parentage verification.

  2008cited by this paper
• Revising how the computer program cervus accommodates genotyping error increases success in paternity assignment

  2007cited by this paper
• The Power of Single-Nucleotide Polymorphisms for Large-Scale Parentage Inference

  2006cited by this paper
• The aunt and uncle effect: an empirical evaluation of the confounding influence of full sibs of parents on pedigree reconstruction.

  2001cited by this paper

• Genomics‐Enabled Mixed‐Stock Analysis Uncovers Intraspecific Migratory Complexity and Detects Unsampled Populations in a Harvested Fish

  2025cites this paper
• Cowpea genetic diversity, population structure and genome-wide association studies in Malawi: insights for breeding programs

  2025cites this paper
• Pedigree reconstruction based on genotype data in chickens

  2024influential citation
• Next-generation data filtering in the genomics era

  2024cites this paper
• Optimal SNP filtering strategies for pedigree reconstruction: A case study with wild red‐spotted masu salmon population

  2024influential citation
• A Mid-Density Single-Nucleotide Polymorphism Panel for Molecular Applications in Cowpea (Vigna unguiculata (L.) Walp)

  2024cites this paper
• Development and Parentage Analysis of SNP Markers for Chestnut-Vented Nuthatch (Sitta nagaensis) based on ddRAD-seq Data

  2024cites this paper
• Agonistic song rate positively correlates with male breeding success and avian malaria infection in Acrocephalus paludicola (Aquatic Warbler), a promiscuous songbird with female-only parental care

  2024cites this paper
• Advanced spawning in Pacific bluefin tuna, Thunnus orientalis, by a shift in consecutive photothermal regimes in a land-based tank

  2023cites this paper
• Design and validation of a high-density single nucleotide polymorphism array for the Eastern oyster (Crassostrea virginica)

  2023cites this paper
• Population structure and genetic diversity of rainbow trout (Oncorhynchus mykiss) broodstocks from Brazil using SNP markers

  2023cites this paper
• Selective breeding of saline-tolerant striped catfish (Pangasianodon hypophthalmus) for sustainable catfish farming in climate vulnerable Mekong Delta, Vietnam

  2022cites this paper
• Parentage Analysis in Giant Grouper (Epinephelus lanceolatus) Using Microsatellite and SNP Markers from Genotyping-by-Sequencing Data

  2021influential citation
• A 2b-RAD parentage analysis pipeline for complex and mixed DNA samples.

  2021cites this paper
• Development and validation of a SNP-based genotyping tool for pedigree establishment in Australian greenlip abalone Haliotis laevigata Donovan, 1808

  2021cites this paper
• Development of SNP parentage assignment in the Portuguese oyster Crassostrea angulata

  2021cites this paper
• There Is No ‘Rule of Thumb’: Genomic Filter Settings for a Small Plant Population to Obtain Unbiased Gene Flow Estimates

  2021cites this paper
• Molecular Fingerprinting and Hybridity Authentication in Cowpea Using Single Nucleotide Polymorphism Based Kompetitive Allele-Specific PCR Assay

  2021cites this paper
• Using whole-genome SNP data to reconstruct a large multi-generation pedigree in apple germplasm

  2020cites this paper
• Differences in genetic architecture between continents at a major locus previously associated with sea age at sexual maturity in European Atlantic salmon

  2019cites this paper
• Effectiveness of SNPs for parentage and sibship assessment in polygamous yellowtail kingfish Seriola lalandi

  2019cites this paper
• The future of parentage analysis: From microsatellites to SNPs and beyond

  2019cites this paper