Two crystal forms of the restriction enzyme MspI–DNA complex show the same novel structure

No abstract is available for this paper.

• Publication year

  2005

• Venue

  Protein Science

• Publication date

  2005-10-01

• Fields of study

  Biology, Medicine, Chemistry

• Identifiers
  DOI 10.1110/ps.051565105PMID 16195548PMCID PMC2253285
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

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  2004influential reference
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• REBASE: restriction enzymes and methyltransferases

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  2002influential reference
• Sequence selectivity and degeneracy of a restriction endonuclease mediated by DNA intercalation

  2002influential reference
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  1995influential reference
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  1991influential reference
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• Purification and properties of the Bsu endonuclease.

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• Biochemical characterization of the restriction-modification system of Bacillus sphaericus.

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• Solvent content of protein crystals.

  1968influential reference

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