Differences in secondary structure between packaged and unpackaged single-stranded DNA of bacteriophage phi X174 determined by Raman spectroscopy: a model for phi X174 DNA packaging.

No abstract is available for this paper.

• Publication year

  1991

• Venue

  Biochemistry

• Publication date

  1991-05-21

• Fields of study

  Biology, Medicine, Chemistry

• Identifiers
  DOI 10.1021/BI00234A004PMID 1827990
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Structural studies of bean pod mottle virus, capsid, and RNA in crystal and solution states by laser Raman spectroscopy.

  1990cited by this paper
• Preliminary investigation of the phage phi X174 crystal structure.

  1990cited by this paper
• Preliminary investigation of the phage φX174 crystal structure

  1990cited by this paper
• Protein-RNA interactions in an icosahedral virus at 3.0 A resolution.

  1989cited by this paper
• Genetic analysis of the filamentous bacteriophage packaging signal and of the proteins that interact with it

  1989cited by this paper
• Biology of the Bacteriophage φX174

  1988cited by this paper
• A solution structure for poly(rA).poly(dT) with different furanose pucker and backbone geometry in rA and dT strands and intrastrand hydrogen bonding of adenine 8CH.

  1988cited by this paper
• Crystal and solution structures of the B-DNA dodecamer d(CGCAAATTTGCG) probed by Raman spectroscopy: heterogeneity in the crystal structure does not persist in the solution structure.

  1988cited by this paper
• Phage phi X174 probed by laser Raman spectroscopy: evidence for capsid-imposed constraint on DNA secondary structure.

  1987cited by this paper
• Biological applications of Raman spectroscopy

  1987cited by this paper
• N-terminal domain of the bacteriophage lambda repressor: investigation of secondary structure and tyrosine hydrogen bonding in wild-type and mutant sequences by Raman spectroscopy.

  1986cited by this paper
• Spectroscopy of biological systems

  1986cited by this paper
• Raman spectra of single crystals of r(GCG)d(CGC) and d(CCCCGGGG) as models for A DNA, their structure transitions in aqueous solution, and comparison with double-helical poly(dG).poly(dC).

  1986cited by this paper
• Virus Structure and Assembly

  1985cited by this paper
• Resolution enhancement in Raman spectra of biological macromolecules by Fourier deconvolution: applications to single-stranded DNA and RNA viruses

  1985cited by this paper
• Irreversible binding of phage phi X174 to cell-bound lipopolysaccharide receptors and release of virus-receptor complexes.

  1985cited by this paper
• An A-helix structure for poly(dA-dT) X poly(dA-dT).

  1985cited by this paper
• RNA-protein interactions and secondary structures of cowpea chlorotic mottle virus for in vitro assembly.

  1984cited by this paper
• Characterization of DNA structures by laser Raman spectroscopy

  1984cited by this paper
• The Raman spectra of left-handed DNA oligomers incorporating adenine-thymine base pairs+.

  1984cited by this paper
• Quantitative analysis of nucleic acids, proteins, and viruses by Raman band deconvolution.

  1984cited by this paper
• Folding of two large nucleotide chains.

  1984cited by this paper
• In vitro synthesis of bacteriophage phi X174 by purified components.

  1983cited by this paper
• The morphogenetic signal of bacteriophage f1.

  1983cited by this paper
• Structural studies of P22 phage, precursor particles, and proteins by laser Raman spectroscopy.

  1982cited by this paper
• The high salt form of poly(dG-dC).poly(dG-dC) is left-handed Z-DNA: Raman spectra of crystals and solutions.

  1981cited by this paper
• Orientation of the DNA in the filamentous bacteriophage f1.

  1981cited by this paper
• Long range base pairing in bacteriophage phi X174 single-stranded DNA.

  1980cited by this paper
• DNA structure and gene regulation.

  1980cited by this paper
• A rapid alkaline extraction procedure for screening recombinant plasmid DNA.

  1979cited by this paper
• A specific DNA orientation in the filamentous bacteriophage fd as probed by psoralen crosslinking and electron microscopy.

  1979cited by this paper
• The nucleotide sequence of bacteriophage φX174

  1978cited by this paper
• The nucleotide sequence of bacteriophage phiX174.

  1978cited by this paper
• Gene K, a new overlapping gene in bacteriophage G4

  1978cited by this paper
• Studies on secondary structure of single-stranded RNA from bacteriophage MS2 by electron microscopy.

  1976cited by this paper
• Psoralen-crosslinked secondary structure map of single-stranded virus DNA.

  1976cited by this paper
• Interpretation of the doublet at 850 and 830 cm-1 in the Raman spectra of tyrosyl residues in proteins and certain model compounds.

  1975cited by this paper
• Isolation and characterization of self-complementary sequences from phiX174 viral DNA.

  1975cited by this paper
• Melting and premelting phenomenon in DNA by laser Raman scattering

  1975cited by this paper
• Isolation and characterization of self-complementary sequences from øX174 viral DNA

  1975cited by this paper
• Role of the gene beta-product in bacteriophage phi-X174 development.

  1974cited by this paper
• Role of the gene B product in bacteriophage φX174 development

  1974cited by this paper
• Raman studies of nucleic acids. 8. Estimation of RNA secondary structure from Raman scattering by phosphate-group vibrations.

  1973cited by this paper
• The conformation of polycytidylic acid, polyguanylic acid, polyinosinic acid, and their helical complexes in aqueous solution from laser Raman scattering

  1972cited by this paper
• Raman studies of nucleic acids. VII. Poly A · poly U and poly G · Poly C

  1972cited by this paper
• Determination of the backbone structure of nucleic acids and nucleic acid oligomers by laser Raman scattering.

  1972cited by this paper
• Conformational dependence of Raman scattering intensities in polyadenylic acid.

  1970cited by this paper
• STUDIES ON THE PROTEINS OF ΦX174, II. THE PROTEIN COMPOSITION OF THE ΦX COAT

  1969cited by this paper
• Structure of the DNA of bacteriophage fd. II. Isolation and characterization of a DNA fraction with double strand-like properties.

  1969cited by this paper
• Studies on the proteins of phi X174. II. The protein composition of the phi X coat.

  1969cited by this paper
• Determination of the base pairing content of ribonucleic acids by infrared spectroscopy

  1969cited by this paper
• Raman spectral studies of nucleic acids and related molecules—I Ribonucleic acid derivatives

  1967cited by this paper

• Disenfranchised DNA: biochemical analysis of mutant øX174 DNA-binding proteins may further elucidate the evolutionary significance of the unessential packaging protein A*

  2024cites this paper
• Molecular Insights into the Binding of Linear Polyethylenimines and Single-Stranded DNA Using Raman Spectroscopy: A Quantitative Approach.

  2022cites this paper
• Chloride Enhances DNA Reactivity with Chlorine under Conditions Relevant to Water Treatment

  2022cites this paper
• Bio-hybrid gold nanoparticles as SERS probe for rapid bacteria cell identification.

  2020cites this paper
• Finally, a Role Befitting Astar: Strongly Conserved, Unessential Microvirus A* Proteins Ensure the Product Fidelity of Packaging Reactions

  2019cites this paper
• Unlabeled Semen Analysis by Means of the Holographic Imaging

  2017cites this paper
• Combined Raman Spectroscopy and Digital Holographic Microscopy for Sperm Cell Quality Analysis

  2017cites this paper
• A Molecular View of the Dynamics of dsDNA Packing Inside Viral Capsids in the Presence of Ions.

  2017cites this paper
• Conformational SERS Classification of K-Ras Point Mutations for Cancer Diagnostics.

  2017cites this paper
• Self-assembly of silver nanoparticles and bacteriophage

  2016cites this paper
• Rapid detection of Pseudomonas aeruginosa by phage-capture system coupled with micro-Raman spectroscopy

  2016cites this paper
• Simultaneous Holographic Microscopy and Raman Spectroscopy Monitoring of Human Spermatozoa Photodegradation

  2016cites this paper
• Phage-AgNPs complex as SERS probe for U937 cell identification.

  2015influential citation
• Molecular evolution and phylogenetics of circular single-stranded DNA viruses

  2015cites this paper
• Contributions of the Human SSB Complex and MEI5-SWI5 Complex to Homologous Recombination

  2014cites this paper
• High-Resolution Structure of a Virally Encoded DNA-Translocating Conduit and the Mechanism of DNA Penetration

  2014cites this paper
• Icosahedral bacteriophage ΦX174 forms a tail for DNA transport during infection

  2013cites this paper
• Base Composition and Translational Selection are Insufficient to Explain Codon Usage Bias in Plant Viruses

  2013cites this paper
• Structural context effects in the oxidation of 8-oxo-7,8-dihydro-2'-deoxyguanosine to hydantoin products: electrostatics, base stacking, and base pairing.

  2012cites this paper
• The budding yeast Mei5-Sae3 complex interacts with Rad51 and preferentially binds a DNA fork structure.

  2011cites this paper
• Triad CNT-NPs/Polymer Nanocomposites: Fabrication, Characterization, and Preliminary Antimicrobial Study

  2011cites this paper
• Single-stranded genomic architecture constrains optimal codon usage

  2011cites this paper
• Structural and biological evaluation of a multifunctional SWCNT-AgNPs-DNA/PVA bio-nanofilm

  2011cites this paper
• The Use of Ultraviolet Resonance Raman Spectroscopy in the Analysis of Ionizing-Radiation-Induced Damage in DNA

  2009cites this paper
• Correlation of amine number and pDNA binding mechanism for trehalose-based polycations.

  2008cites this paper
• Aggregation and adsorption at the air-water interface of bacteriophage phiX174 single-stranded DNA.

  2008cites this paper
• Mechanisms of drug–DNA recognition distinguished by Raman spectroscopy, ,

  2008cites this paper
• Coarse Grained Molecular Dynamics Simulation of Electromechanically‐Gated DNA Modified Conical Nanopores

  2008cites this paper
• Raman spectroscopy of DNA modified by intrastrand cross-links of antitumor cisplatin.

  2007cites this paper
• Binding of regulatory protein omega from Streptococcus pyogenes plasmid pSM19035 to direct and inverted 7‐base pair repeats of operator DNA

  2007cites this paper
• Deciphering the role of hydrogen bonding in enhancing pDNA-polycation interactions.

  2007cites this paper
• Effect of denaturation on the photochemistry of pyrimidine bases in isolated DNA.

  2006cites this paper
• Structural perturbations induced in linear and circular DNA by the architectural protein HU from Bacillus stearothermophilus.

  2006cites this paper
• The Thermal Denaturation of DNA in the Presence of Sr ' , Ba 2 , Mg 2 + , Ca 2 + , Mn 2 + , C 02 + , Ni 2 + , and Cd 2 +

  2005cites this paper
• Raman, polarized Raman and ultraviolet resonance Raman spectroscopy of nucleic acids and their complexes

  2005cites this paper
• The Application and Development of Raman Spectroscopy on Biological Molecule DNA

  2004cites this paper
• Genetic and functional analyses of the øX174 DNA binding protein: the effects of substitutions for amino acid residues that spatially organize the two DNA binding domains.

  2004cites this paper
• DNA secondary structure and Raman markers of supercoiling in Escherichia coli plasmid pUC19.

  2002cites this paper
• Temperature dependence of the Raman spectrum of DNA. II. Raman signatures of premelting and melting transitions of poly(dA).poly(dT) and comparison with poly(dA-dT).poly(dA-dT).

  2002cites this paper
• φX174 Genome-Capsid Interactions Influence the Biophysical Properties of the Virion: Evidence for a Scaffolding-Like Function for the Genome during the Final Stages of Morphogenesis

  2002influential citation
• Fourier transform Raman study of the structural specificities on the interaction between DNA and biogenic polyamines.

  2001cites this paper
• Protein-directed DNA structure II. Raman spectroscopy of a leucine zipper bZIP complex.

  2000cites this paper
• Protein-directed DNA structure. I. Raman spectroscopy of a high-mobility-group box with application to human sex reversal.

  2000cites this paper
• TEMPERATURE DEPENDENCE OF THE RAMAN SPECTRUM OF DNA. PART I : RAMAN SIGNATURES OF PREMELTING AND MELTING TRANSITIONS OF POLY(DA-DT).POLY(DA-DT)

  1999cites this paper
• Raman spectroscopic analysis of Tet repressor-operator DNA interaction in deuterium oxide.

  1998cites this paper
• Interaction of Tet repressor with operator DNA and with tetracycline studied by infrared and Raman spectroscopy.

  1998influential citation
• Radiation-induced structural modifications in dsDNA analysed by FT-Raman spectroscopy.

  1996cites this paper
• DNA melting investigated by differential scanning calorimetry and Raman spectroscopy.

  1996cites this paper
• Raman spectroscopic determination of thymidine nucleoside structures in nucleotides.

  1996cites this paper
• Resonance Raman spectroscopy of 4-thiothymidine and oligodeoxynucleotides containing this base both free in solution and bound to the restriction endonuclease EcoRV.

  1996cites this paper
• Raman signature of the four-stranded intercalated cytosine motif in crystal and solution structures of DNA deoxycytidylates d(CCCT) and d(C8).

  1996cites this paper
• Effects of biocides on the transduction of Pseudomonas aeruginosa PAO by F116 bacteriophage

  1995cites this paper
• Raman spectroscopy of DNA-metal complexes. II. The thermal denaturation of DNA in the presence of Sr2+, Ba2+, Mg2+, Ca2+, Mn2+, Co2+, Ni2+, and Cd2+.

  1995cites this paper
• Purification of viruses and macromolecular assemblies for structural investigations using a novel ion exchange method.

  1994cites this paper
• Evidence of novel secondary structure in DNA-bound protamine is revealed by Raman spectroscopy.

  1994cites this paper
• Secondary structure and interaction of phage D108 Ner repressor with a 61-base-pair operator: evidence for altered protein and DNA structures in the complex.

  1994cites this paper
• Raman microspectroscopic study of low-pH-induced changes in DNA structure of polytene chromosomes.

  1994cites this paper
• Hydrogen exchange dynamics of the P22 virion determined by time-resolved Raman spectroscopy. Effects of chromosome packaging on the kinetics of nucleotide exchanges.

  1994cites this paper
• Raman spectroscopy of DNA-metal complexes. I. Interactions and conformational effects of the divalent cations: Mg, Ca, Sr, Ba, Mn, Co, Ni, Cu, Pd, and Cd.

  1993cites this paper
• Double-helical RNA in satellite tobacco mosaic virus

  1993cites this paper
• New developments in Raman spectroscopy of biological systems

  1993cites this paper
• Role of DNA-protein interactions in bacteriophage phi X174 DNA injection.

  1993cites this paper
• Structural basis for bacteriophage phi X174 assembly and eclipse as defined by temperature-sensitive mutations.

  1993cites this paper
• Viral protein-nucleic acid interactions

  1992cites this paper
• Secondary structure and interactions of the packaged dsDNA genome of bacteriophage P22 investigated by Raman difference spectroscopy.

  1992cites this paper
• Atomic structure of single-stranded DNA bacteriophage ΦX174 and its functional implications

  1991cites this paper
• DNA recognition by the helix-turn-helix motif: investigation by laser Raman spectroscopy of the phage lambda repressor and its interaction with operator sites OL1 and OR3.

  1991cites this paper
• Raman spectroscopy of filamentous bacteriophage Ff (fd, M13, f1) incorporating specifically-deuterated alanine and tryptophan side chains. Assignments and structural interpretation.

  1991cites this paper