GeneSeqer@PlantGDB: Gene structure prediction in plant genomes.

No abstract is available for this paper.

• Publication year

  2003

• Venue

  Nucleic Acids Research

• Publication date

  Unknown publication date

• Fields of study

  Biology, Medicine, Computer Science, Environmental Science

• Identifiers
  PMID 12824374PMCID PMC168940
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Computational modeling of gene structure in Arabidopsis thaliana

  2004cited by this paper
• Refined Annotation of the Arabidopsis Genome by Complete Expressed Sequence Tag Mapping1

  2003cited by this paper
• The EMBL Nucleotide Sequence Database: major new developments

  2003cited by this paper
• DNA Data Bank of Japan (DDBJ) in XML

  2003cited by this paper
• A draft sequence of the rice genome (Oryza sativa L. ssp. japonica).

  2002cited by this paper
• The Maize Genome Sequencing Project

  2002cited by this paper
• Gene structure identification with MyGV using cDNA evidence and protein homologs to improve ab initio predictions

  2002cited by this paper
• The National Plant Genomics Initiative: Objectives for 2003–20081

  2002cited by this paper
• A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)

  2002cited by this paper
• Full-length messenger RNA sequences greatly improve genome annotation

  2002cited by this paper
• A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)

  2002cited by this paper
• Gene structure prediction and alternative splicing analysis using genomically aligned ESTs.

  2001cited by this paper
• Spidey: a tool for mRNA-to-genomic alignments.

  2001cited by this paper
• Gene2EST: a BLAST2 server for searching expressed sequence tag (EST) databases with eukaryotic gene-sized queries.

  2001cited by this paper
• Optimal spliced alignment of homologous cDNA to a genomic DNA template

  2000cited by this paper
• Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

  2000cited by this paper
• Evaluation of gene prediction software using a genomic data set: application to <$O_SSF>Arabidopsis thaliana<$C_SSF>sequences

  1999cited by this paper
• Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

  1997cited by this paper

• MOLECULAR SCREENING OF BASAL STEM ROT RESISTANCE GENES IN OIL PALM

  2022cites this paper
• FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences

  2021cites this paper
• A system level approach to identify novel cell size regulators

  2019cites this paper
• Development of ILP Markers from Genes related to Stalk Traits in Sugarcane to Assess Genetic Diversity and Genetic Structure of Sugarcane

  2018influential citation
• Genome Analysis Computational Finishing of Large Sequence Contigs Reveals Interspersed Nested Repeats and Gene Islands in the rf 1-Associated Region of Maize 1 [ W ] [ OA ]

  2017cites this paper
• Bioinformatics Tools in Agriculture: An Update

  2017cites this paper
• Two hAT transposon genes were transferred from Brassicaceae to broomrapes and are actively expressed in some recipients

  2016cites this paper
• GENOMIC RESOURCE DEVELOPMENT AND CANDIDATE GENE EVALUATION IN FRAGARIA VESCA (L.)

  2015influential citation
• Recipes 2.0: building for today and tomorrow

  2014cites this paper
• Identification of RNA silencing components in soybean and sorghum

  2014influential citation
• Designing novel antibacterials: application of omics science

  2014cites this paper
• Gene Identification Programs in Bread Wheat: A Comparison Study

  2013cites this paper
• Evaluation of Genome Sequencing Quality in Selected Plant Species Using Expressed Sequence Tags

  2013cites this paper
• Development of SNP markers for genes of the phenylpropanoid pathway and their association to kernel and malting traits in barley

  2013cites this paper
• Evidence of cryptic introgression in tomato (Solanum lycopersicum L.) based on wild tomato species alleles

  2012cites this paper
• Sequence variation in the barley genes encoding sucrose synthase I and sucrose phosphate synthase II, and its association with variation in grain traits and malting quality

  2012influential citation
• A web-based platform for rice microarray annotation and data analysis

  2010cites this paper
• Delineating the structural, functional and evolutionary relationships of sucrose phosphate synthase gene family II in wheat and related grasses

  2010cites this paper
• Allelic Gene Structure Variations in Anopheles gambiae Mosquitoes

  2010influential citation
• Authoring Technical Documents for Effective Retrieval

  2010cites this paper
• Application of high-resolution DNA melting for genotyping and variant scanning of diploid and autotetraploid potato

  2009cites this paper
• Functional genomics for plant natural product biosynthesis.

  2009cites this paper
• Linkage mapping of putative regulator genes of barley grain development characterized by expression profiling

  2009cites this paper
• Analysis and prediction of exon, intron, intergenic region and splice sites for A. thaliana and C. elegans genomes

  2009cites this paper
• Computational Finishing of Large Sequence Contigs Reveals Interspersed Nested Repeats and Gene Islands in the rf1-Associated Region of Maize1[W][OA]

  2009cites this paper
• WebGMAP: a web service for mapping and aligning cDNA sequences to genomes

  2009cites this paper
• Association mapping and marker development of the candidate genes (1 → 3),(1 → 4)-β-d-Glucan-4-glucanohydrolase and (1 → 4)-β-Xylan-endohydrolase 1 for malting quality in barley

  2009cites this paper
• Fractionation of synteny in a genomic region containing tandemly duplicated genes across glycine max, Medicago truncatula, and Arabidopsis thaliana.

  2008cites this paper
• Association of haplotype diversity in the α-amylase gene amy1 with malting quality parameters in barley

  2008cites this paper
• The subtelomere of Oryza sativa chromosome 3 short arm as a hot bed of new gene origination in rice.

  2008cites this paper
• Genome Annotation in Plants and Fungi: EuGene as a Model Platform

  2008cites this paper
• Computational annotation of eukaryotic gene structures: Algorithms development and software systems

  2007cites this paper
• Molecular characterization of Ph1 as a major chromosome pairing locus in polyploid wheat

  2006cites this paper
• xGDB: open-source computational infrastructure for the integrated evaluation and analysis of genome features

  2006cites this paper
• High precision multi-genome scale reannotation of enzyme function by EFICAz

  2006cites this paper
• Bioinformatics and its applications in plant biology.

  2006cites this paper
• yrGATE: a web-based gene-structure annotation tool for the identification and dissemination of eukaryotic genes

  2006cites this paper
• EMMA: an efficient massive mapping algorithm using improved approximate mapping filtering.

  2006cites this paper
• Sequence Conservation of Homeologous Bacterial Artificial Chromosomes and Transcription of Homeologous Genes in Soybean (Glycine max L. Merr.)

  2006cites this paper
• Alternative splicing expression of U1 snRNP 70K gene is evolutionary conserved between different plant species

  2006cites this paper
• New ab initio methods of small genome sequence interpretation.

  2006cites this paper
• The paleopolyploid nature of the soybean genome: duplicate gene identification, regional sequence characterization and expression studies

  2006influential citation
• Using Expressing Sequence Tags to Improve Gene Structure Annotation

  2006cites this paper
• Plant genome informatics: evaluation and analysis of genomic DNA features involved in the transcriptional processing of protein coding genes

  2006cites this paper
• Short Specialist

  2005cites this paper
• Gene identification in novel eukaryotic genomes by self-training algorithm

  2005cites this paper
• Incorporation of splice site probability models for non-canonical introns improves gene structure prediction in plants

  2005cites this paper
• Comparative EST analyses in plant systems.

  2005cites this paper
• Comparative Plant Genomics Resources at PlantGDB1

  2005cites this paper
• Gene structure prediction in plant genomes

  2005cites this paper
• Intron-flanking EST–PCR markers: from genetic marker development to gene structure analysis in Rhododendron

  2005cites this paper
• Community-based gene structure annotation.

  2005cites this paper
• GMAP: a genomic mapping and alignment program for mRNA and EST sequence

  2005cites this paper
• Maize and Biodiversity : The Effects of Transgenic Maize in Mexico Chapter 1 Context and Background on Maize and its Wild Relatives in Mexico for the Article 13 Initative on Maize and Biodiversity Prepared

  2004cites this paper
• Environmental buyouts: protection at a price.

  2004cites this paper
• Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus

  2004cites this paper
• MaizeGDB, the community database for maize genetics and genomics

  2004cites this paper
• PlantGDB, plant genome database and analysis tools

  2004cites this paper
• University of New Hampshire Scholars' Repository University of New Hampshire Scholars' Repository

  year unknowncites this paper