Domain Analysis of the Chloroplast Polynucleotide Phosphorylase Reveals Discrete Functions in RNA Degradation, Polyadenylation, and Sequence Homology with Exosome Proteins Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.013326.

No abstract is available for this paper.

• Publication year

  2003

• Venue

  The Plant Cell Online

• Publication date

  2003-09-01

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1105/tpc.013326PMID 12953107PMCID PMC181327
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• The Yeast Mitochondrial Degradosome

  2003cited by this paper
• RNA Polyadenylation and Degradation in Cyanobacteria Are Similar to the Chloroplast but Different from Escherichia coli *

  2003cited by this paper
• Running rings around RNA: a superfamily of phosphate-dependent RNases.

  2002influential reference
• PNPase activity determines the efficiency of mRNA 3′‐end processing, the degradation of tRNA and the extent of polyadenylation in chloroplasts

  2002influential reference
• Identification and cloning of human polynucleotide phosphorylase, hPNPaseold-35, in the context of terminal differentiation and cellular senescence

  2002cited by this paper
• The mammalian exosome mediates the efficient degradation of mRNAs that contain AU‐rich elements

  2002cited by this paper
• Protein-protein interactions between human exosome components support the assembly of RNase PH-type subunits into a six-membered PNPase-like ring.

  2002influential reference
• DEAD Box RhlB RNA Helicase Physically Associates with Exoribonuclease PNPase to Degrade Double-stranded RNA Independent of the Degradosome-assembling Region of RNase E*

  2002cited by this paper
• A complex prediction: three‐dimensional model of the yeast exosome

  2002influential reference
• Mutational analysis of polynucleotide phosphorylase from Escherichia coli.

  2002influential reference
• Polynucleotide phosphorylase is a global regulator of virulence and persistency in Salmonella enterica

  2002cited by this paper
• Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach.

  2001cited by this paper
• Transcript Lifetime Is Balanced between Stabilizing Stem-Loop Structures and Degradation-Promoting Polyadenylation in Plant Mitochondria

  2001cited by this paper
• Polynucleotide Phosphorylase Functions as Both an Exonuclease and a Poly(A) Polymerase in Spinach Chloroplasts

  2001influential reference
• Chloroplast PNPase exists as a homo-multimer enzyme complex that is distinct from the Escherichia coli degradosome.

  2001influential reference
• Cold‐temperature induction of Escherichia coli polynucleotide phosphorylase occurs by reversal of its autoregulation †‡

  2001influential reference
• Exoribonuclease superfamilies: structural analysis and phylogenetic distribution.

  2001influential reference
• A duplicated fold is the structural basis for polynucleotide phosphorylase catalytic activity, processivity, and regulation.

  2000influential reference
• Polynucleotide phosphorylase functions both as a 3′ → 5′ exonuclease and a poly(A) polymerase in Escherichia coli

  2000influential reference
• Processing and degradation of chloroplast mRNA.

  2000influential reference
• Polynucleotide phosphorylase functions both as a 3' right-arrow 5' exonuclease and a poly(A) polymerase in Escherichia coli.

  2000cited by this paper
• Degradation of mRNA in bacteria: emergence of ubiquitous features

  2000cited by this paper
• Characterization of the E.coli poly(A) polymerase: nucleotide specificity, RNA-binding affinities and RNA structure dependence.

  2000influential reference
• Polyadenylation of three classes of chloroplast RNA in Chlamydomonas reinhadtii.

  2000cited by this paper
• Polyadenylation accelerates the degradation of the mitochondrial mRNA associated with cytoplasmic male sterility in sunflower

  1999cited by this paper
• Preferential degradation of polyadenylated and polyuridinylated RNAs by the bacterial exoribonuclease polynucleotide phosphorylase.

  1999influential reference
• The C‐terminal half of RNase E, which organizes the Escherichia coli degradosome, participates in mRNA degradation but not rRNA processing in vivo

  1999cited by this paper
• mRNA degradation. A tale of poly(A) and multiprotein machines.

  1999influential reference
• Polyadenylation Promotes Degradation of 3′-Structured RNA by theEscherichia coli mRNA Degradosome in Vitro *

  1999cited by this paper
• Degradation of mRNA in Escherichia coli: an old problem with some new twists.

  1999cited by this paper
• Degrading chloroplast mRNA: the role of polyadenylation.

  1999influential reference
• Polyadenylation Occurs at Multiple Sites in Maize Mitochondrial cox2 mRNA and Is Independent of Editing Status

  1999cited by this paper
• Messenger RNA stability and its role in control of gene expression in bacteria and phages.

  1999cited by this paper
• Polyadenylation and degradation of mRNA in the chloroplast.

  1999influential reference
• Blocking polyadenylation of mRNA in the chloroplast inhibits its degradation

  1997influential reference
• The Mechanism of Preferential Degradation of Polyadenylated RNA in the Chloroplast

  1997cited by this paper
• Polyadenylation of mRNA in prokaryotes.

  1997cited by this paper
• An essential function for the phosphate-dependent exoribonucleases RNase PH and polynucleotide phosphorylase

  1997cited by this paper
• Addition of destabilizing poly (A)-rich sequences to endonuclease cleavage sites during the degradation of chloroplast mRNA.

  1996influential reference
• CSP41, a sequence-specific chloroplast mRNA binding protein, is an endoribonuclease.

  1996cited by this paper
• Chloroplast mRNA 3′‐end processing by a high molecular weight protein complex is regulated by nuclear encoded RNA binding proteins.

  1996cited by this paper
• RNA-binding activities of the different domains of a spinach chloroplast ribonucleoprotein.

  1994cited by this paper
• Conducting the G-quartet.

  1993cited by this paper
• 莱哈衣藻（Chlamydomonas reinhardtii ...

  1993cited by this paper
• The 54 kDa RNA-binding protein from mustard chloroplasts mediates endonucleolytic transcript 3' end formation in vitro.

  1993cited by this paper
• Identification of the rph (RNase PH) gene of Bacillus subtilis: evidence for suppression of cold-sensitive mutations in Escherichia coli

  1992cited by this paper
• Isolation and characterization of a new temperature-sensitive polynucleotide phosphorylase mutation in Escherichia coli K-12.

  1990cited by this paper
• The P30 movement protein of tobacco mosaic virus is a single-strand nucleic acid binding protein.

  1990influential reference
• 17 Polynucleotide Phosphorylase

  1982cited by this paper
• tRNA punctuation model of RNA processing in human mitochondria

  1981cited by this paper
• [Polynucleotide phosphorylase].

  1968cited by this paper

• Human PNPase causes RNA stabilization and accumulation of R-loops in the Escherichia coli model system

  2023cites this paper
• Integrating physiology, genetics, and transcriptome to decipher a new thermo-sensitive and light-sensitive virescent leaf gene mutant in cucumber

  2022cites this paper
• Organellar and Secretory Ribonucleases: Major Players in Plant RNA Homeostasis1[OPEN]

  2020cites this paper
• Roles of Organellar RNA-Binding Proteins in Plant Growth, Development, and Abiotic Stress Responses

  2020cites this paper
• Systematic sequencing of chloroplast transcript termini from Arabidopsis thaliana reveals >200 transcription initiation sites and the extensive imprints of RNA-binding proteins and secondary structures

  2019cites this paper
• Functions of Conserved Domains of Human Polynucleotide Phosphorylase on RNA Oxidation

  2019cites this paper
• Major 3'-5' Exoribonucleases in the Metabolism of Coding and Non-coding RNA.

  2018cites this paper
• Inhibition of homologous phosphorolytic ribonucleases by citrate may represent an evolutionarily conserved communicative link between RNA degradation and central metabolism

  2017cites this paper
• A chloroplast-localized S1 domain-containing protein SRRP1 plays a role in Arabidopsis seedling growth in the presence of ABA.

  2015cites this paper
• A nuclear-encoded chloroplast-targeted S1 RNA-binding domain protein affects chloroplast rRNA processing and is crucial for the normal growth of Arabidopsis thaliana.

  2015cites this paper
• Structure and function of the archaeal exosome

  2014cites this paper
• A small portion of plastid transcripts is polyadenylated in the flagellate Euglena gracilis

  2014cites this paper
• Analyzing the functions of human polynucleotide phosphorylase (hPNPaseold-35)

  2013cites this paper
• Human polynucleotide phosphorylase (hPNPaseold-35): should I eat you or not--that is the question?

  2013cites this paper
• A novel RNA binding protein affects rbcL gene expression and is specific to bundle sheath chloroplasts in C4 plants

  2013cites this paper
• The archaeal DnaG protein needs Csl4 for binding to the exosome and enhances its interaction with adenine-rich RNAs

  2013cites this paper
• PNPASE and RNA trafficking into mitochondria.

  2012influential citation
• Analysis of factors involved in plastid gene expression in the unicellular green alga Chlamydomonas reinhardtii

  2012cites this paper
• Heterogeneous complexes of the RNA exosome in Sulfolobus solfataricus.

  2012cites this paper
• Caractérisation génétique et moléculaire d'une incompatibilité nucléo-cytoplasmique chez Arabidopsis Thaliana : Genetics and molecular characterization of a nuclear-cytoplasmic incompatibility in Arabidopsis thaliana

  2012cites this paper
• Specific residues and regions within the KH and S1 domains of PNPase that are important for RNA binding and autoregulation

  2012cites this paper
• The cutting crew - ribonucleases are key players in the control of plastid gene expression.

  2012cites this paper
• A mutation in PNPT1, encoding mitochondrial-RNA-import protein PNPase, causes hereditary hearing loss.

  2012cites this paper
• Exonucleases and endonucleases involved in polyadenylation‐ assisted RNA decay

  2011cites this paper
• The RNA Exosomes

  2011cites this paper
• The exozyme model: a continuum of functionally distinct complexes.

  2011cites this paper
• Chloroplast RNase J compensates for inefficient transcription termination by removal of antisense RNA.

  2011cites this paper
• Mutational analysis of Arabidopsis chloroplast polynucleotide phosphorylase reveals roles for both RNase PH core domains in polyadenylation, RNA 3'-end maturation and intron degradation.

  2011influential citation
• Megadalton Complexes in the Chloroplast Stroma of Arabidopsis thaliana Characterized by Size Exclusion Chromatography, Mass Spectrometry, and Hierarchical Clustering*

  2010cites this paper
• Human Polynucleotide Phosphorylase (hPNPaseold-35): An evolutionary conserved gene with an expanding repertoire of RNA degradation functions

  2010cites this paper
• Chloroplast RNA metabolism.

  2010cites this paper
• The evolutionarily conserved subunits Rrp4 and Csl4 confer different substrate specificities to the archaeal exosome

  2010cites this paper
• The Exozyme Model: A New Paradigm of Exosome Subunit Activity Revealed by Diverse and Distinct Substrate Specificities of Exosome Subunits In Vivo

  2010cites this paper
• RNA polyadenylation and decay in mitochondria and chloroplasts.

  2009cites this paper
• The role of 3'-5' exoribonucleases in RNA degradation.

  2009cites this paper
• Polyadenylation in Arabidopsis and Chlamydomonas organelles: the input of nucleotidyltransferases, poly(A) polymerases and polynucleotide phosphorylase.

  2009cites this paper
• Post-Transcriptional Control of Chloroplast Gene Expression

  2009cites this paper
• A phylogenetic view of bacterial ribonucleases.

  2009cites this paper
• Human Mitochondrial SUV3 and Polynucleotide Phosphorylase Form a 330-kDa Heteropentamer to Cooperatively Degrade Double-stranded RNA with a 3′-to-5′ Directionality*

  2009cites this paper
• Poly(A)-assisted RNA decay and modulators of RNA stability.

  2009cites this paper
• Post-Transcriptional Control of Chloroplast Gene Expression

  2009cites this paper
• Coping with cryptic and defective transcripts in plant mitochondria.

  2008cites this paper
• Polynucleotide phosphorylase and the archaeal exosome as poly(A)-polymerases.

  2008cites this paper
• The RNase E/G-type endoribonuclease of higher plants is located in the chloroplast and cleaves RNA similarly to the E. coli enzyme.

  2008cites this paper
• Factors influencing RNA degradation by Thermus thermophilus polynucleotide phosphorylase

  2008cites this paper
• Crystal structure of Escherichia coli PNPase: central channel residues are involved in processive RNA degradation.

  2008cites this paper
• Rrp4 and Csl4 are needed for efficient degradation but not for polyadenylation of synthetic and natural RNA by the archaeal exosome.

  2008cites this paper
• Molecular Biology and Ecology of the Rhizobia–Legume Symbiosis

  2007cites this paper
• Analysis of the human polynucleotide phosphorylase (PNPase) reveals differences in RNA binding and response to phosphate compared to its bacterial and chloroplast counterparts.

  2007influential citation
• Genetic analysis of polynucleotide phosphorylase structure and functions.

  2007cites this paper
• Human polynucleotide phosphorylase: location matters.

  2007cites this paper
• Integration of Chloroplast Nucleic Acid Metabolism into the Phosphate Deprivation Response in Chlamydomonas reinhardtii[OA]

  2007cites this paper
• The TCL1 oncoprotein binds the RNase PH domains of the PNPase exoribonuclease without affecting its RNA degrading activity.

  2007cites this paper
• The PNPase, exosome and RNA helicases as the building components of evolutionarily-conserved RNA degradation machines.

  2007cites this paper
• Processing, degradation, and polyadenylation of chloroplast transcripts

  2007influential citation
• Characterization of the Completed Rice Genome Sequence and Scope of Its Utilization in Cereal Improvement

  2006cites this paper
• RNA Polyadenylation in Prokaryotes and Organelles; Different Tails Tell Different Tales

  2006influential citation
• Polynucleotide phosphorylase: an evolutionary conserved gene with an expanding repertoire of functions.

  2006cites this paper
• Cell and molecular biology of the exosome: how to make or break an RNA.

  2006cites this paper
• The Oligomeric Stromal Proteome of Arabidopsis thaliana Chloroplasts *S

  2006cites this paper
• The exosome: a macromolecular cage for controlled RNA degradation

  2006cites this paper
• RNA polyadenylation and degradation in different Archaea; roles of the exosome and RNase R

  2006influential citation
• Conserved domains in polynucleotide phosphorylase among eubacteria.

  2005cites this paper
• Defining the Domains of Human Polynucleotide Phosphorylase (hPNPaseOLD-35) Mediating Cellular Senescence

  2005influential citation
• RhlB helicase rather than enolase is the beta-subunit of the Escherichia coli polynucleotide phosphorylase (PNPase)-exoribonucleolytic complex.

  2005cites this paper
• From Polynucleotide Phosphorylase to Neurobiology

  2005cites this paper
• JBC Centennial 1905 – 2005 100 Years of Biochemistry and Molecular Biology From Polynucleotide Phosphorylase to Neurobiology

  2005cites this paper
• RNA polyadenylation in Archaea: not observed in Haloferax while the exosome polynucleotidylates RNA in Sulfolobus

  2005cites this paper
• Messenger RNA stability in mitochondria: different means to an end.

  2004cites this paper
• Cooperation of endo- and exoribonucleases in chloroplast mRNA turnover.

  2004influential citation
• Two Exoribonucleases Act Sequentially to Process Mature 3′-Ends of atp9 mRNAs in Arabidopsis Mitochondria*

  2004cites this paper
• Modulating T cell signals using CD3/CD28 Xcyte™ Dynabeads® allows for selective expansion or deletion of antigen-specific T cells

  2004cites this paper
• Molecular Biology and Biotechnology of Plant Organelles

  2004cites this paper
• Antisense Transcript and RNA Processing Alterations Suppress Instability of Polyadenylated mRNA in Chlamydomonas Chloroplasts

  2004influential citation
• Plastid and Plant Mitochondrial RNA Processing and RNA Stability

  2004cites this paper