The Arabidopsis SWI2/SNF2 Chromatin Remodeling ATPase BRAHMA Targets Directly to PINs and Is Required for Root Stem Cell Niche Maintenance

No abstract is available for this paper.

• Publication year

  2015

• Venue

  The Plant Cell

• Publication date

  2015-05-19

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1105/tpc.15.00091PMID 25991732PMCID PMC4498203
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

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• PLETHORA gradient formation mechanism separates auxin responses

  2014influential reference
• ANGUSTIFOLIA3 Binds to SWI/SNF Chromatin Remodeling Complexes to Regulate Transcription during Arabidopsis Leaf Development[W]

  2014cited by this paper
• Faculty Opinions recommendation of A histone acetylation switch regulates H2A.Z deposition by the SWR-C remodeling enzyme.

  2014cited by this paper
• Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.

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• A SWI/SNF Chromatin-Remodeling Complex Acts in Noncoding RNA-Mediated Transcriptional Silencing

  2013cited by this paper
• A Histone Acetylation Switch Regulates H2A.Z Deposition by the SWR-C Remodeling Enzyme

  2013cited by this paper
• Identification of SHRUBBY, a SHORT-ROOT and SCARECROW interacting protein that controls root growth and radial patterning

  2013influential reference
• BRAHMA ATPase of the SWI/SNF Chromatin Remodeling Complex Acts as a Positive Regulator of Gibberellin-Mediated Responses in Arabidopsis

  2013cited by this paper
• Characterization of MADS-domain transcription factor complexes in Arabidopsis flower development

  2012cited by this paper
• SWI2/SNF2 chromatin remodeling ATPases overcome polycomb repression and control floral organ identity with the LEAFY and SEPALLATA3 transcription factors

  2012influential reference
• The SWI2/SNF2 Chromatin Remodeling ATPase BRAHMA Represses Abscisic Acid Responses in the Absence of the Stress Stimulus in Arabidopsis[W]

  2012influential reference
• ATP-dependent chromatin remodeling: genetics, genomics and mechanisms

  2011influential reference
• Diversity of operation in ATP-dependent chromatin remodelers.

  2011cited by this paper
• Histone acetylation by CBP and p300 at double-strand break sites facilitates SWI/SNF chromatin remodeling and the recruitment of non-homologous end joining factors.

  2011cited by this paper
• Brahma Is Required for Proper Expression of the Floral Repressor FLC in Arabidopsis

  2011cited by this paper
• HDA6 Directly Interacts with DNA Methyltransferase MET1 and Maintains Transposable Element Silencing in Arabidopsis1[W][OA]

  2011cited by this paper
• The AUX1 LAX family of auxin influx carriers is required for the establishment of embryonic root cell organization in Arabidopsis thaliana.

  2010cited by this paper
• Analysis of root meristem size development.

  2010cited by this paper
• Nucleosome positioning and gene regulation: advances through genomics

  2009cited by this paper
• Members of the GCN5 Histone Acetyltransferase Complex Regulate PLETHORA-Mediated Root Stem Cell Niche Maintenance and Transit Amplifying Cell Proliferation in Arabidopsis[W]

  2009cited by this paper
• Plant stem cell niches: standing the test of time.

  2008cited by this paper
• A simple way to identify non-viable cells within living plant tissue using confocal microscopy

  2008cited by this paper
• Snf2 proteins in plants: gene silencing and beyond.

  2008influential reference
• Auxin: the looping star in plant development.

  2008cited by this paper
• Root layers: complex regulation of developmental patterning.

  2008cited by this paper
• The Arabidopsis BRAHMA Chromatin-Remodeling ATPase Is Involved in Repression of Seed Maturation Genes in Leaves1[W][OA]

  2008cited by this paper
• Whole-Genome Analysis of Histone H3 Lysine 27 Trimethylation in Arabidopsis

  2007cited by this paper
• Auxin transport is sufficient to generate a maximum and gradient guiding root growth

  2007influential reference
• PLETHORA proteins as dose-dependent master regulators of Arabidopsis root development

  2007influential reference
• A nucleosome interaction module is required for normal function of Arabidopsis thaliana BRAHMA.

  2007influential reference
• SWI/SNF chromatin remodeling and linker histones in plants.

  2007cited by this paper
• An Evolutionarily Conserved Mechanism Delimiting SHR Movement Defines a Single Layer of Endodermis in Plants

  2007cited by this paper
• Stem-cell niches: nursery rhymes across kingdoms

  2007cited by this paper
• Interactions among PIN-FORMED and P-Glycoprotein Auxin Transporters in Arabidopsis[W]

  2007cited by this paper
• The putative SWI/SNF complex subunit BRAHMA activates flower homeotic genes in Arabidopsisthaliana

  2006influential reference
• A role for chromatin remodeling in regulation of CUC gene expression in the Arabidopsis cotyledon boundary

  2006cited by this paper
• Whole-Genome Analysis of the SHORT-ROOT Developmental Pathway in Arabidopsis

  2006cited by this paper
• Skeletal muscle specification by myogenin and Mef2D via the SWI/SNF ATPase Brg1

  2006cited by this paper
• Profiling histone modification patterns in plants using genomic tiling microarrays

  2005influential reference
• The RETINOBLASTOMA-RELATED gene regulates stem cell maintenance in Arabidopsis roots.

  2005influential reference
• The PIN auxin efflux facilitator network controls growth and patterning in Arabidopsis roots

  2005influential reference
• Chromatin remodeling complexes: strength in diversity, precision through specialization.

  2005influential reference
• The Arabidopsis thaliana SNF2 homolog AtBRM controls shoot development and flowering

  2004influential reference
• The PLETHORA genes mediate patterning of the Arabidopsis root stem cell niche.

  2004cited by this paper
• Roles of histone acetylation and chromatin remodeling factor in a meiotic recombination hotspot

  2004cited by this paper
• Local, efflux-dependent auxin gradients as a common module for plant organ formation.

  2003influential reference
• SCARECROW is involved in positioning the stem cell niche in the Arabidopsis root meristem.

  2003influential reference
• Regulation of phyllotaxis by polar auxin transport

  2003cited by this paper
• Efflux-dependent auxin gradients establish the apical–basal axis of Arabidopsis

  2003cited by this paper
• Function and selectivity of bromodomains in anchoring chromatin-modifying complexes to promoter nucleosomes.

  2002influential reference
• AtPIN4 mediates sink-driven auxin gradients and root patterning in Arabidopsis.

  2002influential reference
• Cooperation between C/EBPalpha TBP/TFIIB and SWI/SNF recruiting domains is required for adipocyte differentiation.

  2001cited by this paper
• Intercellular movement of the putative transcription factor SHR in root patterning

  2001cited by this paper
• The SHORT-ROOT gene controls radial patterning of the Arabidopsis root through radial signaling.

  2000influential reference
• Molecular analysis of SCARECROW function reveals a radial patterning mechanism common to root and shoot.

  2000influential reference
• Technical advance: spatio-temporal analysis of mitotic activity with a labile cyclin-GUS fusion protein.

  1999cited by this paper
• An auxin-dependent distal organizer of pattern and polarity in the Arabidopsis root.

  1999cited by this paper
• Continuous and widespread roles for the Swi–Snf complex in transcription

  1999cited by this paper
• Short-range control of cell differentiation in the Arabidopsis root meristem

  1997cited by this paper
• Aux/IAA proteins repress expression of reporter genes containing natural and highly active synthetic auxin response elements.

  1997cited by this paper
• The SCARECROW gene regulates an asymmetric cell division that is essential for generating the radial organization of the Arabidopsis root.

  1996cited by this paper
• Cell fate in the Arabidopsis root meristem determined by directional signalling

  1995cited by this paper
• Stimulation of GAL4 derivative binding to nucleosomal DNA by the yeast SWI/SNF complex.

  1994influential reference
• A multisubunit complex containing the SWI1/ADR6, SWI2/SNF2, SWI3, SNF5, and SNF6 gene products isolated from yeast.

  1994cited by this paper
• Five SWI/SNF gene products are components of a large multisubunit complex required for transcriptional enhancement.

  1994cited by this paper
• Cellular organisation of the Arabidopsis thaliana root.

  1993cited by this paper
• Root development in Arabidopsis: four mutants with dramatically altered root morphogenesis.

  1993cited by this paper
• brahma: a regulator of Drosophila homeotic genes structurally related to the yeast transcriptional activator SNF2/SWI2.

  1992cited by this paper
• GUS fusions: beta‐glucuronidase as a sensitive and versatile gene fusion marker in higher plants.

  1987cited by this paper
• Genes affecting the regulation of SUC2 gene expression by glucose repression in Saccharomyces cerevisiae.

  1984cited by this paper
• Five SWI genes are required for expression of the HO gene in yeast.

  1984cited by this paper

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• SWI/SNF chromatin remodeling factor BRAHMA promotes de novo shoot regeneration by epigenetic priming via H3K27me3 removal

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• Epigenetic control during root development and symbiosis.

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• Chromatin sensing: Integration of environmental signals to reprogram plant development through chromatin regulators.

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• Organization, genomic targeting, and assembly of three distinct SWI/SNF chromatin remodeling complexes in Arabidopsis.

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• The Chromatin Remodeler BRAHMA Recruits HISTONE DEACETYLASE6 to Regulate Root Growth Inhibition in Response to Phosphate Starvation in Arabidopsis.

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• The plant stem-cell niche and pluripotency: 15 years of an epigenetic perspective

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• Epigenetic variation as a new plant breeding tool: A review

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  2016influential citation
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  2016cites this paper
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  2015cites this paper
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