D. Lavenier

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Aliases
D. Lavenier, Dominique D. Lavenier, Dominique Lavenier
Publication record
183 papers · 4,955 citations · H-index 27

PAPERS

Correction to: SVJedi: genotyping structural variations with long reads
20233 citationsauthor #3
Optimal de novo assemblies for chloroplast genomes based on inverted repeats patterns
20230 citationsauthor #3
“In vitro construction and long read sequencing analysis of a 24 kb long artificial DNA sequence encoding the Universal Declaration of the Rights of Man and of the Citizen ”
20230 citationsauthor #5
Dynamic Sliding Window Encoding for Data Storage on DNA Under Biological and Indexing Constraints
20231 citationsauthor #3
Genotyping Structural Variations using Long Read Data
20230 citationsauthor #3
DNA Storage: Synthesis and Sequencing Semiconductor Technologies
20222 citationsauthor #1
Optimal Scaffolding for Chloroplasts’ Inverted Repeats
20220 citationsauthor #3
Inverted Repeats Scaﬀolding for a Dedicated Chloroplast Genome Assembler
20220 citationsauthor #3
Constrained Consensus Sequence Algorithm for DNA Archiving
20216 citationsauthor #1
Proceedings of the SeqBio 2015 workshop: String algorithms for bioinformatics
20210 citationsauthor #38
Channel Model with Memory for DNA Data Storage with Nanopore Sequencing
202120 citationsauthor #4
Complete Genome Sequences of Two Strains of Streptococcus pyogenes Belonging to an Emergent Clade of the Genotype emm89 in Brittany, France
20201 citationsauthor #5
Variant Calling Parallelization on Processor-in-Memory Architecture
202037 citationsauthor #1
Long Reads Assembly Using Integer Linear Programming
20200 citationsauthor #4
A Graph-Theoretic Barcode Ordering Model for Linked-Reads
20201 citationsauthor #4
De novo long reads assembly using integer linear programing
20191 citationsauthor #3
SVJedi : Structural variation genotyping using long reads
20190 citationsauthor #3
Genotyping Structural Variations using Long Read Data
20191 citationsauthor #3
Advanced Coding Schemes for DNA-Based Data Storage Using Nanopore Sequencing Technologies
20192 citationsauthor #1
Statistically Significant Discriminative Patterns Searching
20195 citationsauthor #3
SVJedi: Genotyping structural variations with long reads
201926 citationsauthor #3
Complete assembly of circular and chloroplast genomes based on global optimization
201911 citationsauthor #4
Error Correction Schemes for DNA Storage with Nanopore Sequencing
20191 citationsauthor #3
Global Optimization for Scaffolding and Completing Genome Assemblies
20188 citationsauthor #3
Author Correction: A broad genomic panel of microsatellite loci from Brycon orbignyanus (Characiformes: Bryconidae) an endangered migratory Neotropical fish
20180 citationsauthor #7
A broad genomic panel of microsatellite loci from Brycon orbignyanus (Characiformes: Bryconidae) an endangered migratory Neotropical fish
201812 citationsauthor #7
Simka: large scale de novo comparative metagenomics
20171 citationsauthor #6
Evaluation of genome assembly software based on long reads
20175 citationsauthor #2
Full Sequencing and Genomic Analysis of Three emm75 Group A Streptococcus Strains Recovered in the Course of an Epidemiological Shift in French Brittany
20175 citationsauthor #6
Hardware acceleration of de novo genome assembly
20171 citationsauthor #4
Genome Sequence of Lactococcus lactis subsp . lactis bv . diacetylactis LD 61 FALENTIN
20170 citationsauthor #1
Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species
2017347 citationsauthor #19
De Novo NGS Data Compression
20171 citationsauthor #5
Evaluation of long read error correction software
20174 citationsauthor #2
New Results - Bioinformatics Analysis
20170 citationsauthor #7
Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
2017656 citationsauthor #40
GPU-accelerated shortest paths computations for planar graphs
20173 citationsauthor #3
Erratum to: Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species
20175 citationsauthor #19
Critical Assessment of Metagenome Interpretation – a benchmark of computational metagenomics software
201764 citationsauthor #40
Global optimization approach for circular and chloroplast genome assembly
20177 citationsauthor #3
Multiple comparative metagenomics using multiset k-mer counting
2016111 citationsauthor #6
Genome Sequence of the Uncommon Streptococcus pyogenes M/emm66 Strain STAB13021, Isolated from Clonal Clustered Cases in French Brittany
20164 citationsauthor #6
Identifying Genetic Variant Combinations Using Skypatterns
20161 citationsauthor #2
BLAST on UPMEM
20167 citationsauthor #1
Global Optimization for Scafolding and Completing Genome Assemblies
20164 citationsauthor #3
Global Optimization Methods for Genome Scaffolding
20169 citationsauthor #4
A clonally reproducing generalist aphid pest colonises diverse host plants by rapid transcriptional plasticity of duplicated gene clusters
20166 citationsauthor #19
DNA mapping using Processor-in-Memory architecture
201632 citationsauthor #1
MAPPING on UPMEM
20163 citationsauthor #1
Simka: fast kmer-based method for estimating the similarity between numerous metagenomic datasets
20159 citationsauthor #3
All-Pairs Shortest Path algorithms for planar graph for GPU-accelerated clusters
201526 citationsauthor #5
Reference-free compression of high throughput sequencing data with a probabilistic de Bruijn graph
201593 citationsauthor #3
KLAST: fast and sensitive software to compare large genomic databanks on cloud
20152 citationsauthor #7
Parallel Seed-Based Approach to Multiple Protein Structure Similarities Detection
20154 citationsauthor #5
Combining execution pipelines to improve parallel implementation of HMMER on FPGA
20155 citationsauthor #6
Genome Sequence of Lactococcus lactis subsp. lactis bv. diacetylactis LD61
201412 citationsauthor #7
KLAST: a new high-performance sequence similarity search tool
20142 citationsauthor #3
Commet: Comparing and combining multiple metagenomic datasets
201442 citationsauthor #4
Compression of high throughput sequencing data with probabilistic de Bruijn graph
20147 citationsauthor #3
Bloocoo, a memory efficient read corrector
201418 citationsauthor #2
GATB: Toolbox for developing efficient NGS software
20140 citationsauthor #7
New Results - Protein Structure
20140 citationsauthor #3
New Results - NGS methodology
20140 citationsauthor #3
GATB: Genome Assembly & Analysis Tool Box
201472 citationsauthor #7
New Software and Platforms - Next Generation Sequencing
20140 citationsauthor #5
Efficient Multi-GPU Computation of All-Pairs Shortest Paths
201439 citationsauthor #5
Quality Metrics for Benchmarking Sequences Comparison Tools
20145 citationsauthor #2
Speeding up NGS software development
20140 citationsauthor #7
GATB: a software toolbox for genome assembly and analysis
20140 citationsauthor #7
KLAST – high-performance sequence similarity search tool
20140 citationsauthor #4
New Results - HPC and parallelism
20140 citationsauthor #3
Efficient Multi-GPU Algorithm for All-Pairs Shortest Paths
20133 citationsauthor #5
Seamless coarse grained parallelism integration in intensive bioinformatics workflows
20134 citationsauthor #2
MINIA on a Raspberry Pi, Assembling a 100 Mbp Genome on a Credit Card Sized Computer
20135 citationsauthor #4
Parallel Seed-Based Approach to Protein Structure Similarity Detection
20132 citationsauthor #5
Graphics Processing Unit–Accelerated Quantitative Trait Loci Detection
20133 citationsauthor #4
New Results - NGS applications
20130 citationsauthor #5
Compareads: comparing huge metagenomic experiments
201254 citationsauthor #4
Accelerating QTL mapping with graphics cards
20120 citationsauthor #4
GPU accelerated QTL detection
20121 citationsauthor #4
Assemblathon 1: a competitive assessment of de novo short read assembly methods.
2011547 citationsauthor #23
How to accelerate genomic sequence alignment 4X using half an FPGA
20111 citationsauthor #3
Parallel and Memory-Efficient Reads Indexing for Genome Assembly
20110 citationsauthor #3
Parallel and memory-e cient reads indexing for genome assembly
20112 citationsauthor #3
SLICEE: A Service oriented middleware for intensive scientific computation
20112 citationsauthor #4
Localized Genome Assembly from Reads to Scaffolds: Practical Traversal of the Paired String Graph
201113 citationsauthor #2
OFFRE de THÈSE Sujet de thèse : Active Indexing Memory for Genomic Processing
20110 citationsauthor #2
Chapter 14 – GPU Accelerated RNA Folding Algorithm*
20110 citationsauthor #2
biomanycores.org: a repository of interoperable open-source code for many-core bioinformatics
20110 citationsauthor #6
Biomanycores, open-source parallel code for many-core bioinformatics
20111 citationsauthor #6
Genome Sequence of the Pea Aphid Acyrthosiphon pisum
20101,250 citationsauthor #167
Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
2010103 citationsauthor #6
GASSST: global alignment short sequence search tool
2010110 citationsauthor #2
Seed-Based Parallel Protein SequenceComparison Combining Multithreading, GPU, and FPGA technologies
20101 citationsauthor #1
Fine-Grained Parallel Genomic Sequence Comparison
20100 citationsauthor #1
Parallel Genomic Sequence Comparison
20100 citationsauthor #1
A Reconfigurable Disparity Engine for Stereovision in Advanced Driver Assistance Systems
20109 citationsauthor #3
GPU Accelerated RNA Folding Algorithm
200957 citationsauthor #2
c-GAMMA: Comparative Genome Analysis of Molecular Markers
20093 citationsauthor #3
PLAST: parallel local alignment search tool for database comparison
200985 citationsauthor #2

TIMELINE

1987 1 citations

1988 1 citations

1990 8 citations

1991 4 citations

1992 15 citations

1993 33 citations

1994 13 citations

1995 29 citations

1996 51 citations

1997 99 citations

1998 30 citations

1999 29 citations

2000 129 citations

2001 160 citations

2002 12 citations

2003 78 citations

2004 47 citations

2005 38 citations

2006 57 citations

2007 44 citations

2008 58 citations

2009 153 citations

2010 1,473 citations

2011 566 citations

2012 55 citations

2013 17 citations

2014 197 citations

2015 139 citations

2016 177 citations

2017 1,099 citations

2018 20 citations

2019 47 citations

2020 39 citations

2021 26 citations

2022 2 citations

2023 4 citations

Unknown 7 citations

D. Lavenier

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