J. Bjaalie

An interactive 3D atlas of gene expression in the mouse brain
20260 citationsauthor #15
Software and pipelines for registration and analyses of rodent brain image data in reference atlas space
20253 citationsauthor #7
Two-Eyed Seeing and other Indigenous perspectives for neuroscience
202512 citationsauthor #4
Siibra: A software tool suite for realizing a Multilevel Human Brain Atlas from complex data resources
20252 citationsauthor #8
An extended and improved CCFv3 annotation and Nissl atlas of the entire mouse brain
20250 citationsauthor #8
DeMBA: a developmental atlas for navigating the mouse brain in space and time
20253 citationsauthor #8
The Locare workflow: representing neuroscience data locations as geometric objects in 3D brain atlases
20242 citationsauthor #9
Neural correlates of object identity and reward outcome in the sensory cortical-hippocampal hierarchy: coding of motivational information in perirhinal cortex
20244 citationsauthor #8
The coming decade of digital brain research: A vision for neuroscience at the intersection of technology and computing
202454 citationsauthor #4
Spatially integrated cortico-subcortical tracing data for analyses of rodent brain topographical organization
20242 citationsauthor #6
The developing mouse dopaminergic system: Cortical-subcortical shift in D1/D2 receptor balance and increasing regional differentiation
20247 citationsauthor #3
An extended and improved CCFv3 annotation and Nissl atlas of the entire mouse brain
20241 citationsauthor #8
Detecting the effect of genetic diversity on brain composition in an Alzheimer’s disease mouse model
20248 citationsauthor #18
AtOM, an ontology model for standardizing use of brain atlases in tools, workflows, and data infrastructures
20231 citationsauthor #5
Scaling up cell-counting efforts in neuroscience through semi-automated methods
20236 citationsauthor #4
Waxholm Space atlas of the rat brain: a 3D atlas supporting data analysis and integration
202361 citationsauthor #5
The efferent connections of the orbitofrontal, posterior parietal, and insular cortex of the rat brain
20232 citationsauthor #3
Not all regions are created equal: identifying regions and cell types associated with cognitive resilience in the AD‐BXD model population
20230 citationsauthor #7
A Timm-Nissl multiplane microscopic atlas of rat brain zincergic terminal fields and metal-containing glia
20233 citationsauthor #5
A guide to the BRAIN Initiative Cell Census Network data ecosystem
202338 citationsauthor #4
Spike-based coupling between single neurons and populations across rat sensory cortices, perirhinal cortex, and hippocampus
20234 citationsauthor #8
AtOM, an ontology model to standardize use of brain atlases in tools, workflows, and data infrastructures
202312 citationsauthor #5
Neural correlates of object identity and reward outcome in the corticohippocampal hierarchy: double dissociation between perirhinal and secondary visual cortex
20231 citationsauthor #8
DeepSlice: rapid fully automatic registration of mouse brain imaging to a volumetric atlas
202321 citationsauthor #9
Detecting the effect of genetic diversity on brain composition in an Alzheimer’s disease mouse model
20234 citationsauthor #18
A neuroscientist’s guide to using murine brain atlases for efficient analysis and transparent reporting
20238 citationsauthor #8
Brain‐wide spatial analysis reveals cell‐type‐specific genetic modifiers of Alzheimer’s disease progression
20222 citationsauthor #6
Brain simulation as a cloud service: The Virtual Brain on EBRAINS
202281 citationsauthor #40
The BRAIN Initiative Cell Census Network Data Ecosystem: A User’s Guide
20225 citationsauthor #7
The topography of corticopontine projections is controlled by postmitotic expression of the area-mapping gene Nr2f1
202210 citationsauthor #3
Linking Brain Structure, Activity, and Cognitive Function through Computation
202241 citationsauthor #10
Atlas-based data integration for mapping the connections and architecture of the brain
202248 citationsauthor #2
Recommendations for repositories and scientific gateways from a neuroscience perspective
202211 citationsauthor #3
Perspectives on Data Sharing and the New NIH policy from the European Union
20223 citationsauthor #1
DeepSlice: rapid fully automatic registration of mouse brain imaging to a volumetric atlas
202223 citationsauthor #8
3D Atlas of the Pituitary Gland of the Model Fish Medaka (Oryzias latipes)
202121 citationsauthor #6
International data governance for neuroscience.
202166 citationsauthor #3
Topography of corticopontine projections is controlled by postmitotic expression of the area-mapping gene Nr2f1
20212 citationsauthor #3
Editorial: APPNING: Animal Population Imaging
20210 citationsauthor #2
Brain Modelling as a Service: The Virtual Brain on EBRAINS
20218 citationsauthor #39
Correction to: A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility
20215 citationsauthor #2
3D atlas of the pituitary gland of the model fish medaka
20217 citationsauthor #6
The International Brain Initiative: enabling collaborative science.
202111 citationsauthor #12
International Brain Initiative: An Innovative Framework for Coordinated Global Brain Research Efforts.
202024 citationsauthor #6
Nutil: A Pre- and Post-processing Toolbox for Histological Rodent Brain Section Images
202058 citationsauthor #4
Database of literature derived cellular measurements from the murine basal ganglia
20209 citationsauthor #3
Brain‐wide spatial analysis to identify region‐specific changes in cell composition associated with resilience to Alzheimer’s disease in the AD‐BXD mouse population
20203 citationsauthor #6
Database of literature derived cellular measurements from the murine basal ganglia
20200 citationsauthor #3
Towards a European health research and innovation cloud (HRIC)
202048 citationsauthor #9
Densities and numbers of calbindin and parvalbumin positive neurons across the rat and mouse brain
202051 citationsauthor #6
International Brain Initiative: An Innovative Framework for Coordinated Global Brain Research Efforts.
202052 citationsauthor #6
Spatial registration of serial microscopic brain images to three-dimensional reference atlases with the QuickNII tool
2019143 citationsauthor #5
A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility
201939 citationsauthor #2
The Human Brain Project—Synergy between neuroscience, computing, informatics, and brain-inspired technologies
201986 citationsauthor #9
Brain-wide distribution of reporter expression in five transgenic tetracycline-transactivator mouse lines
20192 citationsauthor #7
QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain
201994 citationsauthor #12
Axonal projections from the D2 whisker representation of the rat primary somatosensory cortex (case R602)
20191 citationsauthor #4
The Human Brain Project: Responsible Brain Research for the Benefit of Society.
201947 citationsauthor #2
Towards a Full Volumetric Atlas of Cell-specific Neuronal Spatial Organization in the Entire Mouse Brain
20181 citationsauthor #7
Data integration through brain atlasing: Human Brain Project tools and strategies
201846 citationsauthor #11
Defined astrocytic expression of human amyloid precursor protein in Tg2576 mouse brain
201813 citationsauthor #6
Mapping the quantitative cytoarchitecture of the whole mouse brain by light-sheet microscopy and digital brain atlasing (Conference Presentation)
20180 citationsauthor #6
Navigating the Murine Brain: Toward Best Practices for Determining and Documenting Neuroanatomical Locations in Experimental Studies
201819 citationsauthor #8
Early Alterations in Operant Performance and Prominent Huntingtin Aggregation in a Congenic F344 Rat Line of the Classical CAGn51trunc Model of Huntington Disease
20188 citationsauthor #7
Mapping and Analysis of the Connectome of Sympathetic Premotor Neurons in the Rostral Ventrolateral Medulla of the Rat Using a Volumetric Brain Atlas
201752 citationsauthor #6
Brain-Wide Mapping of Axonal Connections: Workflow for Automated Detection and Spatial Analysis of Labeling in Microscopic Sections
201618 citationsauthor #4
3D Reconstructed Cyto-, Muscarinic M2 Receptor, and Fiber Architecture of the Rat Brain Registered to the Waxholm Space Atlas
201633 citationsauthor #7
Transgene expression in the Nop-tTA driver line is not inherently restricted to the entorhinal cortex
201636 citationsauthor #3
Addendum to "Waxholm Space atlas of the Sprague Dawley rat brain" [NeuroImage 97 (2014) 374-386]
201520 citationsauthor #5
Waxholm Space atlas of the rat brain hippocampal region: Three-dimensional delineations based on magnetic resonance and diffusion tensor imaging
2015102 citationsauthor #3
A three‐plane architectonic atlas of the rat hippocampal region
201579 citationsauthor #4
3-D histology volume reconstructions of axonal tract tracing data
20150 citationsauthor #4
Feeding the human brain model.
201516 citationsauthor #4
Brain-wide mapping and digital atlasing of projections from rat barrel cortex
20150 citationsauthor #1
Anatomical landmarks for registration of experimental image data to volumetric rodent brain atlasing templates.
201565 citationsauthor #7
Three-Dimensional Histology Volume Reconstruction of Axonal Tract Tracing Data: Exploring Topographical Organization in Subcortical Projections from Rat Barrel Cortex
20158 citationsauthor #4
Transgene expression in the Nop-tTA driver line is not inherently restricted to the entorhinal cortex
20150 citationsauthor #3
Waxholm Space atlas of the Sprague Dawley rat brain
2014386 citationsauthor #5
Interoperable atlases of the human brain
201484 citationsauthor #8
Brain-wide map of efferent projections from rat barrel cortex
201465 citationsauthor #2
Brainwide distribution and variance of amyloid-beta deposits in tg-ArcSwe mice.
201423 citationsauthor #4
The glia doctrine: addressing the role of glial cells in healthy brain ageing.
201337 citationsauthor #4
Vesicular glutamate transporter‐3 in the rodent brain: Vesicular colocalization with vesicular γ‐aminobutyric acid transporter
201329 citationsauthor #4
COMPET: High resolution high sensitivity MRI compatible pre-clinical PET scanner
20133 citationsauthor #8
Probing tissue microstructure with restriction spectrum imaging: Histological and theoretical validation
2013253 citationsauthor #4
255 HIGH RESOLUTION AND HIGH SENSITIVITY PET IMAGING WITH COMPET
20120 citationsauthor #9
Characterization of a high resolution and high sensitivity pre-clinical PET scanner with 3D event reconstruction
20120 citationsauthor #4
Workflow and Atlas System for Brain-Wide Mapping of Axonal Connectivity in Rat
201126 citationsauthor #4
COMPET – high resolution and high sensitivity PET scanner with novel readout concept: Setup and simulations
20118 citationsauthor #3
Atlas of transgenic Tet-Off Ca2+/calmodulin-dependent protein kinase II and prion protein promoter activity in the mouse brain
201125 citationsauthor #6
Quantitative Histological Validation of Diffusion MRI Fiber Orientation Distributions in the Rat Brain
2010188 citationsauthor #6
Digital Atlas of Anatomical Subdivisions and Boundaries of the Rat Hippocampal Region
201071 citationsauthor #4
COMPET — A preclinical PET scanner implementing a block detector geometry with high resolution, high sensitivity and 3D event reconstruction
20103 citationsauthor #8
The concentrations and distributions of three C-terminal variants of the GLT1 (EAAT2; slc1a2) glutamate transporter protein in rat brain tissue suggest differential regulation.
2009138 citationsauthor #6
A new software center for the neuroinformatics community
20081 citationsauthor #10
Neuroinformatics: Databases, tools, and computational modeling for studying the nervous system
200813 citationsauthor #1
Understanding the Brain through Neuroinformatics
200826 citationsauthor #1
The Neuroinformatics Portal of the International Neuroinformatics Coordinating Facility
20082 citationsauthor #1
Database application for management of microscopic images
20080 citationsauthor #1
Metabolic plasticity in the supraspinal pain modulating circuitry after noxious stimulus‐induced spinal cord LTP
200838 citationsauthor #4

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