J. McPherson

The DNA sequence and analysis of human chromosome 14
202377 citationsauthor #89
Dr.Nod: computational framework for discovery of regulatory non-coding drivers in tissue-matched distal regulatory elements
20233 citationsauthor #4
Author Correction: The evolutionary history of 2,658 cancers
20234 citationsauthor #802
Author Correction: Pan-cancer analysis of whole genomes
20238 citationsauthor #737
Author Correction: Patterns of somatic structural variation in human cancer genomes
20234 citationsauthor #807
Transcriptomic classes of BCR-ABL1 lymphoblastic leukemia
202341 citationsauthor #22
Neo-adjuvant PARP inhibition prior to prostatectomy: A phase II biomarker-driven trial for men with high-risk, localized prostate cancer and alterations in DNA repair genes.
20233 citationsauthor #2
Abstract 2274: Identification of predisposition and progression gastric cancer biomarkers in Latinos
20220 citationsauthor #10
SCALP syndrome with a germline heterozygous DOCK6 mutation and somatic mosaic NRAS Q61R mutation
20221 citationsauthor #3
094 BUB1B germline variant predisposes to cutaneous melanoma and multiple other primary malignancies
20220 citationsauthor #4
Author Correction: Inferring structural variant cancer cell fraction
20220 citationsauthor #814
Characteristics of amelanotic acantholytic‐like melanoma resembling squamous cell carcinoma
20221 citationsauthor #5
Environmental pesticide exposure and non-Hodgkin lymphoma survival: a population-based study
202213 citationsauthor #2
452 Molecular and histopathologic profiling of melanocytic nevi in patients with RASopathies
20220 citationsauthor #4
A distinct subpopulation of leukemia initiating cells in acute precursor B lymphoblastic leukemia: quiescent phenotype and unique transcriptomic profile
20224 citationsauthor #13
Effect of Pesticide Exposure on Non-Hodgkin Lymphoma Incidence and Survival in California
20210 citationsauthor #2
Whole exome sequencing of a gut-associated lymphoid tissue neoplasm points to precursor or early form of sporadic colon carcinoma.
20213 citationsauthor #5
High-plex spatial RNA profiling reveals cell type-specific biomarker expression during melanoma development.
202120 citationsauthor #9
B08 Impact of Concurrent STK11 Loss and c-MYC Amplification in Metastatic Non-Small Cell Lung Cancer (NSCLC)
20200 citationsauthor #9
RAS pathway influences the number of melanocytic nevi in Cardio-facio-cutaneous and Costello syndromes.
20208 citationsauthor #7
Landscape of somatic single nucleotide variants and indels in colorectal cancer and impact on survival
202070 citationsauthor #45
Novel POFUT1 mutation in patient with flexural and acral hyperpigmented reticulated macules presenting in adolescence
20202 citationsauthor #4
Germline and somatic DNA repair gene alterations in prostate cancer
202033 citationsauthor #2
Identification of Distinct Prognostic Groups: Implications for Patient Selection to Targeted Therapies Among Anti-Endocrine Therapy-Resistant Early Breast Cancers.
20191 citationsauthor #12
Identifying TCDD-resistance genes via murine and rat comparative genomics and transcriptomics
20191 citationsauthor #11
Are prostate cancer patients with BRCA1 and BRCA2 mutations safe for active surveillance?
20191 citationsauthor #6
Cryptic genomic lesions in adverse-risk acute myeloid leukemia identified by integrated whole genome and transcriptome sequencing
201921 citationsauthor #10
Accelerating advanced precision medicine through a harmonized data exchange platform and research consortium (PMEC).
20190 citationsauthor #10
Regional perturbation of gene transcription is associated with intrachromosomal rearrangements and gene fusion transcripts in high grade ovarian cancer
20199 citationsauthor #9
Activation of hedgehog signaling associates with early disease progression in chronic lymphocytic leukemia.
201916 citationsauthor #7
Exosomes transmit retroelement RNAs to drive inflammation and immunosuppression in Ewing Sarcoma
201917 citationsauthor #7
Comparative toxicoproteogenomics of mouse and rat liver identifies TCDD-resistance genes
20194 citationsauthor #12
Genome-wide germline correlates of the epigenetic landscape of prostate cancer
201953 citationsauthor #33
PD50-08 MEN WITH BRCA1 AND BRCA2 MUTATIONS AND LOW/INTERMEDIATE GRADE PROSTATE CANCER MAY HARBOR ADDITIONAL GENOMIC ALTERATIONS OF MORE AGGRESSIVE DISEASE: IMPLICATIONS FOR ACTIVE SURVEILLANCE
20190 citationsauthor #4
408 POFUT1 mutation in a patient with flexural and acral hyperpigmented reticulated macules
20190 citationsauthor #3
Minimally Invasive Real-Time Detection of Actionable Mutations in Patients With Metastatic Solid Tumors Using Fine-Needle and Liquid Biopsies.
20180 citationsauthor #15
Future Promises and Concerns of Ubiquitous Next-Generation Sequencing.
201821 citationsauthor #2
Inactivation of Stage-Specific B-Cell Commitment Genes Generates Distinct Molecular Subtypes of BCR-ABL1 Lymphoblastic Leukemia
20180 citationsauthor #13
Sensitive tumour detection and classification using plasma cell-free DNA methylomes
2018768 citationsauthor #25
Diverse EGFR Exon 20 Insertions and Co‐Occurring Molecular Alterations Identified by Comprehensive Genomic Profiling of NSCLC
2018205 citationsauthor #10
Prediction of acute myeloid leukaemia risk in healthy individuals
2018738 citationsauthor #25
Postnatally Acquired Mutations Underlie the Progression of Transient Leukemia to Myeloid Leukemia of Down Syndrome
20180 citationsauthor #6
P3.13-26 Outcomes of Patients with Metastatic Lung Cancer Presented in a Multidisciplinary Molecular Tumor Board
20181 citationsauthor #7
Improving classification of melanocytic nevi: Association of BRAF V600E expression with distinct histomorphologic features
201838 citationsauthor #7
Tracing the origins of relapse in acute myeloid leukaemia to stem cells
2017499 citationsauthor #16
Molecular heterogeneity of non‐small cell lung carcinoma patient‐derived xenografts closely reflect their primary tumors
201782 citationsauthor #30
Interrogation of Functional Cell-Surface Markers Identifies CD151 Dependency in High-Grade Serous Ovarian Cancer.
201738 citationsauthor #15
FREQUENCY OF DNA REPAIR GENE MUTATIONS IN LOCALIZED AND METASTATIC PROSTATE CANCER: PD03‐02
20170 citationsauthor #5
TMPRSS2-ERG fusions unexpectedly identified in men initially diagnosed with nonprostatic malignancies.
201716 citationsauthor #13
092 Improving classification of melanocytic nevi by integrating molecular and morphologic features
20170 citationsauthor #3
Microscopy with ultraviolet surface excitation for rapid slide-free histology
2017233 citationsauthor #6
Recurrent noncoding regulatory mutations in pancreatic ductal 1 adenocarcinoma 2 3 4 5 6 7
20170 citationsauthor #9
Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line
2017154 citationsauthor #17
Germline BRCA2 mutations drive prostate cancers with distinct evolutionary trajectories
2017215 citationsauthor #24
Recurrent noncoding regulatory mutations in pancreatic ductal adenocarcinoma
201763 citationsauthor #9
Mitochondrial mutations drive prostate cancer aggression
2017112 citationsauthor #16
827PComprehensive characterization of BRCA1 and BRCA2 alterations in circulating tumor DNA and tumor tissue in men with prostate cancer: Implications for clinical care
20171 citationsauthor #2
ISOWN: accurate somatic mutation identification in the absence of normal tissue controls
201739 citationsauthor #4
Association of Distinct Mutational Signatures With Correlates of Increased Immune Activity in Pancreatic Ductal Adenocarcinoma
2017240 citationsauthor #37
Genomic hallmarks of localized, non-indolent prostate cancer
2017243 citationsauthor #68
Frequency of DNA repair gene mutations in localized and metastatic prostate cancer.
20172 citationsauthor #6
Targeted sequencing in a phase III trial of luminal breast cancer: Identification of novel targets.
20170 citationsauthor #17
Whole genome sequencing reveals mechanisms of carcinogenesis in pancreatic ductal adenocarcinoma
20160 citationsauthor #3
Fine-mapping of chromosome 5p15.33 based on a targeted deep sequencing identifies novel lung cancer susceptibility loci Running Title (40 characters): Novel 5p15.33 lung cancer susceptibility loci
20161 citationsauthor #42
Distinct routes of lineage development reshape the human blood hierarchy across ontogeny
2016708 citationsauthor #11
Candidate DNA repair susceptibility genes identified by exome sequencing in high-risk pancreatic cancer.
201652 citationsauthor #17
Truncating Erythropoietin Receptor Rearrangements in Acute Lymphoblastic Leukemia.
2016128 citationsauthor #32
Coming of age: ten years of next-generation sequencing technologies
20163,654 citationsauthor #2
Abstract 3124: Prognostic biomarkers for pancreatic cancer
20160 citationsauthor #17
Fine mapping of chromosome 5p15.33 based on a targeted deep sequencing and high density genotyping identifies novel lung cancer susceptibility loci.
201643 citationsauthor #44
A renewed model of pancreatic cancer evolution based on genomic rearrangement patterns
2016499 citationsauthor #42
Abstract 118: A comprehensive profile of the genomic architecture of curable prostate cancer
20160 citationsauthor #3
Abstract 5221: Linking the molecular profile of colorectal tumors to germline genetic and environmental risk factors
20161 citationsauthor #27
Abstract 850: Comprehensive genome and transcriptome structural analysis of a breast cancer cell line using single molecule sequencing
20160 citationsauthor #16
Abstract B31: Establishment and molecular characterization of patient-derived tumor xenografts from resected tumors or ascites fluids of patients with pancreatic/ampullary/bile duct carcinomas
20160 citationsauthor #11
Erratum: A renewed model of pancreatic cancer evolution based on genomic rearrangement patterns
20169 citationsauthor #42
1 DISTINCT MUTATIONAL SIGNATURES ARE ASSOCIATED WITH CORRELATES OF 1 INCREASED IMMUNE ACTIVITY IN PANCREATIC DUCTAL ADENOCARCINOMA 2 3
20160 citationsauthor #40
Abstract A27: Recurrent noncoding regulatory mutations in pancreatic ductal adenocarcinoma
20161 citationsauthor #8
A cancer cell-line titration series for evaluating somatic classification
20152 citationsauthor #7
A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing
2015271 citationsauthor #77
On the Origins of AML Relapse
20151 citationsauthor #7
66PPROGNOSTIC CLASSIFICATION OF LUNG ADENOCARCINOMA BY INTEGRATED MIRNA-MRNA EXPRESSION PROFILES
20150 citationsauthor #4
Abstract A1-17: Genomic analysis of metachronous pancreatic ductal adenocarcinoma
20150 citationsauthor #9
Abstract 2966: The mutational landscape of localized gleason 6 and 7 prostate cancer
20150 citationsauthor #47
Optimization of miRNA-seq data preprocessing
2015119 citationsauthor #3
Spatio-genomic heterogeneity within localized, multi-focal prostate cancer
20150 citationsauthor #71
GLI2 inhibition abrogates human leukemia stem cell dormancy
201593 citationsauthor #12
A cancer cell-line titration series for evaluating somatic classification
20159 citationsauthor #7
Abstract 4813: High-depth sequencing of 800 cancer-associated genes in 48 matched tumor-normal tissues to identify somatic alterations including low-frequency variants in colorectal cancer
20150 citationsauthor #5
Spatial genomic heterogeneity within localized, multifocal prostate cancer
2015453 citationsauthor #63
Differences of Somatic Mutations and Gene Expression in Blasts of Transient Leukemia and Acute Myeloid Leukemia of Down Syndrome
20140 citationsauthor #4
Abstract 5185: Redefining the somatic landscape of pancreatic adenocarcinoma
20140 citationsauthor #13
Identification of pre-leukemic hematopoietic stem cells in acute leukemia
2014856 citationsauthor #17
ShatterProof: operational detection and quantification of chromothripsis
201448 citationsauthor #10
Genomic testing in cancer: Patient knowledge, attitudes, and expectations
201481 citationsauthor #12
Genomic support for a moa-tinamou clade and adaptive morphological convergence in flightless ratites.
201485 citationsauthor #3
A defining decade in DNA sequencing
201427 citationsauthor #1
SeqControl: process control for DNA sequencing
201410 citationsauthor #12
Ten years of Methods
20140 citationsauthor #1
A Comprehensive Assessment of Somatic Mutation Calling in Cancer Genomes
20147 citationsauthor #59

PROFILE

PAPERS

TIMELINE

COAUTHOR MAP

CONCEPT FOOTPRINT