Zhaohui S. Qin

Abstract 6586: Updates to UALCAN, a comprehensive cancer proteogenomic data analysis platform for discovery research
20230 citationsauthor #11
Abstract 6571: Mammonc-DB: A web based user-friendly tool for comprehensive multi-omics data analysis in breast cancer
20230 citationsauthor #5
Identification of androgen response‐related lncRNAs in prostate cancer
20235 citationsauthor #5
Comprehensive 100-bp resolution genome-wide epigenomic profiling data for the hg38 human reference genome
20221 citationsauthor #4
UALCAN: An update to the integrated cancer data analysis platform
20221,792 citationsauthor #8
NetAct: a computational platform to construct core transcription factor regulatory networks using gene activity
202230 citationsauthor #6
Extensive Chromatin Structure-Function Associations Revealed by Accurate 3D Compartmentalization Characterization
20228 citationsauthor #6
Systematic Exploration in Tissue-Pathway Associations of Complex Traits Using Comprehensive eQTLs Catalog
20212 citationsauthor #5
Systematic Evaluation of DNA Sequence Variations on in vivo Transcription Factor Binding Affinity
20214 citationsauthor #4
Super-Enhancer-Associated Transcription Factors Maintain Transcriptional Regulation in Mature Podocytes
20218 citationsauthor #12
Pan-cancer analysis of pathway-based gene expression pattern at the individual level reveals biomarkers of clinical prognosis
202121 citationsauthor #7
A machine learning approach to brain epigenetic analysis reveals kinases associated with Alzheimer’s disease
202141 citationsauthor #16
Disease category-specific annotation of variants using an ensemble learning framework
20218 citationsauthor #5
Signatures of somatic mutations and gene expression from p16INK4A positive head and neck squamous cell carcinomas (HNSCC)
20207 citationsauthor #6
Truncation of mutant huntingtin in knock-in mice demonstrates exon1 huntingtin is a key pathogenic form
202062 citationsauthor #10
An empirical bayesian approach for testing gene expression fold change and its application in detecting global dosage effects
20200 citationsauthor #7
Inferring Spatial Organization of Individual Topologically Associated Domains via Piecewise Helical Model
20201 citationsauthor #4
Author Correction: Truncation of mutant huntingtin in knock-in mice demonstrates exon1 huntingtin is a key pathogenic form
20202 citationsauthor #10
Application of topic models to a compendium of ChIP-Seq datasets uncovers recurrent transcriptional regulatory modules
20203 citationsauthor #3
Lack of RAN-mediated toxicity in Huntington’s disease knock-in mice
202032 citationsauthor #5
DeconPeaker, a Deconvolution Model to Identify Cell Types Based on Chromatin Accessibility in ATAC-Seq Data of Mixture Samples
202027 citationsauthor #4
A comprehensive review of computational prediction of genome-wide features
20200 citationsauthor #5
Efficacy and safety of neoadjuvant concurrent chemoradiotherapy followed by surgery versus surgery alone in the treatment of resectable esophageal squamous cell carcinoma: a Meta-analysis
20200 citationsauthor #6
Systematic and Comprehensive Survey of Genomic Loci Associated with Complex Diseases and Traits
20201 citationsauthor #5
Pan-Cancer Analysis of Pathway-Based Gene Expression Pattern at the Individual Level Reveals Novel Biomarkers of Clinical Prognosis
20200 citationsauthor #7
Liver kinase B1 correlates with prognosis and epithelial-mesenchymal transition of resectable early stage non-small cell lung cancer
20203 citationsauthor #1
Proceedings of the 2019 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference
20200 citationsauthor #3
Efficacy and safety of high-dose versus conventional-dose conventionally fractionated external beam radiotherapy for stage T1b-4N0-1M0 prostate cancer: a meta-analysis
20190 citationsauthor #7
Regulatory annotation of genomic intervals based on tissue-specific expression QTLs
201914 citationsauthor #3
The efficacy and safety of docetaxel chemotherapy in the treatment of localised high-risk prostate cancer: a Meta-analysis
20190 citationsauthor #5
Association study in African-admixed populations across the Americas recapitulates asthma risk loci in non-African populations
201982 citationsauthor #51
An Integrated System Biology Approach Yields Drug Repositioning Candidates for the Treatment of Heart Failure
20194 citationsauthor #3
Author Correction: Association study in African-admixed populations across the Americas recapitulates asthma risk loci in non-African populations
20194 citationsauthor #51
Rapid Irreversible Transcriptional Reprogramming in Human Stem Cells Accompanied by Discordance between Replication Timing and Chromatin Compartment
201923 citationsauthor #10
Integrative characterization of G-Quadruplexes in the three-dimensional chromatin structure
201977 citationsauthor #6
Efficacy and safety of hyperfractionated versus conventionally fractionated chemoradiotherapy for limited-stage small-cell lung cancer: a meta-analysis
20180 citationsauthor #5
Induction chemoradiotherapy versus induction chemotherapy for potentially resectable stage IIIA (N2) non-small cell lung cancer: a systematic review and meta-analysis.
201814 citationsauthor #2
Probabilistic and machine learning-based retrieval approaches for biomedical dataset retrieval
20184 citationsauthor #2
EWS/ETS-Driven Ewing Sarcoma Requires BET Bromodomain Proteins.
201853 citationsauthor #11
A comprehensive review of computational prediction of genome-wide features.
201816 citationsauthor #5
Optimized distributed systems achieve significant performance improvement on sorted merging of massive VCF files
20181 citationsauthor #11
Publisher Correction: Deep coverage whole genome sequences and plasma lipoprotein(a) in individuals of European and African ancestries
20186 citationsauthor #255
Long non-coding RNA (lncRNA) small nucleolar RNA host gene 1 (SNHG1) promote cell proliferation in colorectal cancer by affecting P53.
201839 citationsauthor #2
Deep coverage whole genome sequences and plasma lipoprotein(a) in individuals of European and African ancestries
201892 citationsauthor #255
RT States: systematic annotation of the human genome using cell type-specific replication timing programs
201815 citationsauthor #6
Identifying tagging SNPs for African specific genetic variation from the African Diaspora Genome
201737 citationsauthor #19
Ten-eleven translocation 2 interacts with forkhead box O3 and regulates adult neurogenesis
2017102 citationsauthor #16
Abstract LB-099: BET bromodomain proteins are essential for the oncogenic EWS-fusion driven Ewing Sarcoma
20170 citationsauthor #10
Improving Hierarchical Models Using Historical Data with Applications in High-Throughput Genomics Data Analysis
20172 citationsauthor #3
Special collection of bioinformatics in the era of precision medicine
20172 citationsauthor #1
Omicseq: a web-based search engine for exploring omics datasets
201711 citationsauthor #8
High Performance Merging of Massive Data from Genome-Wide Association Studies
20170 citationsauthor #3
Computationally Tractable Multivariate HMM in Genome-Wide Mapping Studies.
20171 citationsauthor #3
Using DIVAN to assess disease/trait-associated single nucleotide variants in genome-wide scale
20178 citationsauthor #2
An approach of identifying differential nucleosome regions in multiple samples
20178 citationsauthor #5
DIVAN: accurate identification of non-coding disease-specific risk variants using multi-omics profiles
201663 citationsauthor #3
traseR: an R package for performing trait-associated SNP enrichment analysis in genomic intervals
201621 citationsauthor #2
Challenges and disparities in the application of personalized genomic medicine to populations with African ancestry
201676 citationsauthor #31
Statistical Challenges in Analyzing Methylation and Long-Range Chromosomal Interaction Data
201613 citationsauthor #1
MLL1 and MLL1 fusion proteins have distinct functions in regulating leukemic transcription program
201649 citationsauthor #9
Heat Shock Protein Beta-1 Modifies Anterior to Posterior Purkinje Cell Vulnerability in a Mouse Model of Niemann-Pick Type C Disease
201625 citationsauthor #4
A continuum of admixture in the Western Hemisphere revealed by the African Diaspora genome
2016151 citationsauthor #23
A hidden Markov random field-based Bayesian method for the detection of long-range chromosomal interactions in Hi-C data
201653 citationsauthor #7
Supplementary Material for: Genome-Wide STAT3 Binding Analysis after Histone Deacetylase Inhibition Reveals Novel Target Genes in Dendritic Cells
20160 citationsauthor #13
Bayesian inference with historical data-based informative priors improves detection of differentially expressed genes
201617 citationsauthor #5
Genome-Wide STAT3 Binding Analysis after Histone Deacetylase Inhibition Reveals Novel Target Genes in Dendritic Cells
201613 citationsauthor #13
The single-species metagenome : subtyping 2 Staphylococcus aureus core genome sequences from 3 shotgun metagenomic data 4 5
20160 citationsauthor #4
EGO: A Biomedical Ontology for Integrative Epigenome Representation and Analysis
20160 citationsauthor #2
Gene integrated set profile analysis: a context-based approach for inferring biological endpoints
201610 citationsauthor #11
Widespread rearrangement of 3D chromatin organization underlies polycomb-mediated stress-induced silencing.
2015294 citationsauthor #11
Base-resolution methylation patterns accurately predict transcription factor bindings in vivo
201543 citationsauthor #11
Establishment and biological characterization of radiation-resistant lung carcinoma cell lines
20150 citationsauthor #4
One Size Doesn't Fit All - RefEditor: Building Personalized Diploid Reference Genome to Improve Read Mapping and Genotype Calling in Next Generation Sequencing Studies
201511 citationsauthor #6
Detection of differentially methylated regions from whole-genome bisulfite sequencing data without replicates
2015319 citationsauthor #7
Genome-Wide Binding Studies of Acetyl-STAT3 Demonstrates a Novel Regulatory Pathway in Dendritic Cells
20150 citationsauthor #13
PDEGEM: Modeling non-uniform read distribution in RNA-Seq data
20152 citationsauthor #4
Cell-Cycle Control of Bivalent Epigenetic Domains Regulates the Exit from Pluripotency
201593 citationsauthor #7
sequences from shotgun metagenomic data
20150 citationsauthor #4
Combined Loss of Tet1 and Tet2 Promotes B Cell, but Not Myeloid Malignancies, in Mice.
201598 citationsauthor #13
Direct Amplification, Sequencing and Profiling of Chlamydia trachomatis Strains in Single and Mixed Infection Clinical Samples
201426 citationsauthor #5
Insulator function and topological domain border strength scale with architectural protein occupancy
2014289 citationsauthor #6
Insulator function and topological domain border strength scale with architectural protein occupancy
20141 citationsauthor #6
Abstract LB-132: The central role of EED in orchestration of polycomb group complexes
20140 citationsauthor #12
Systems biology and metagenomics : a showcase of Chinese bioinformatics researchers and their work
20140 citationsauthor #2
The Central Role of EED in the Orchestration of Polycomb Group Complexes
2014155 citationsauthor #17
H2B ubiquitylation promotes RNA Pol II processivity via PAF1 and pTEFb.
201486 citationsauthor #4
Reciprocal occupancy of BCL6 and STAT5 on Growth Hormone target genes: contrasting transcriptional outcomes and promoter-specific roles of p300 and HDAC3.
201422 citationsauthor #3
Targeting MLL1 H3K4 methyltransferase activity in mixed-lineage leukemia.
2014277 citationsauthor #14
Therapeutic Targeting of BET Bromodomain Proteins in Castration-Resistant Prostate Cancer
2014891 citationsauthor #15
EgoNet: identification of human disease ego-network modules
201434 citationsauthor #3
MotifOrganizer: a scalable model-based motif clustering tool for mammalian genomes.
20131 citationsauthor #1
A genome-wide MeSH-based literature mining system predicts implicit gene-to-gene relationships and networks
201341 citationsauthor #3
Advances in Statistical Bioinformatics: Model-Based Methods for Transcript Expression-Level Quantification in RNA-Seq
20131 citationsauthor #3
Advances in Statistical Bioinformatics: Preface
20130 citationsauthor #2
Exploring the Cooccurrence Patterns of Multiple Sets of Genomic Intervals
201356 citationsauthor #2
Sparsely correlated hidden Markov models with application to genome-wide location studies
201314 citationsauthor #5
Characterization of the EZH2-MMSET histone methyltransferase regulatory axis in cancer.
2013147 citationsauthor #15
Abstract 5348: Characterization of the EZH2-MMSET histone methyltransferase regulatory axis in cancer.
20130 citationsauthor #20
Bayesian Inference of Spatial Organizations of Chromosomes
2013215 citationsauthor #3
Allogeneic T cell responses are regulated by a specific miRNA-mRNA network.
201336 citationsauthor #4

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