S. Raychaudhuri

Human leukocyte antigen-DQA1*04:01 and rs2040406 variants are associated with elevated risk of childhood Burkitt lymphoma
20241 citationsauthor #48
Quantifying how TCR sequence variation affects T cell fate at single-cell resolution
20230 citationsauthor #3
Author Correction: Genetic regulation of serum IgA levels and susceptibility to common immune, infectious, kidney, and cardio-metabolic traits
202338 citationsauthor #19
Intrarenal myeloid subsets associated with kidney injury are comparable in mice and patients with lupus nephritis
20237 citationsauthor #34
The T cell receptor sequence influences the likelihood of T cell memory formation
20237 citationsauthor #5
LO-006 Change in urinary biomarkers at three months predicts 1-year treatment response of lupus nephritis better than proteinuria
20230 citationsauthor #31
P136 T-cell-Specific Biomarkers of Early Treatment Response in Patients with Rheumatoid Arthritis Treated with a Tumour Necrosis Factor Inhibitor
20230 citationsauthor #8
Clonal associations of lymphocyte subsets and functional states revealed by single cell antigen receptor profiling of T and B cells in rheumatoid arthritis synovium
202310 citationsauthor #19
Identifying shared genetic architecture between rheumatoid arthritis and other conditions: a phenome-wide association study with genetic risk scores
202312 citationsauthor #11
Methods and Insights from Single-Cell Expression Quantitative Trait Loci
202332 citationsauthor #5
Deep immunophenotyping reveals circulating activated lymphocytes in individuals at risk for rheumatoid arthritis
202312 citationsauthor #38
35 Deciphering complement system-dependent cellular pathways in human rheumatoid arthritis synovial tissues using large single-cell computational omics
20230 citationsauthor #12
Single-cell genomics meets human genetics
202385 citationsauthor #3
The successes and challenges of harmonising juvenile idiopathic arthritis (JIA) datasets to create a large-scale JIA data resource
20231 citationsauthor #30
Multi-population genome-wide association study implicates immune and non-immune factors in pediatric steroid-sensitive nephrotic syndrome
202338 citationsauthor #65
Automated clustering reveals CD4+ T cell subset imbalances in rheumatoid arthritis
202310 citationsauthor #7
Tutorial: a statistical genetics guide to identifying HLA alleles driving complex disease
202329 citationsauthor #19
The Chromatin Landscape of Pathogenic Transcriptional Cell States in Rheumatoid Arthritis
202314 citationsauthor #13
A longitudinal single-cell therapeutic atlas of anti-tumour necrosis factor treatment in inflammatory bowel disease
20239 citationsauthor #18
The influence of HLA genetic variation on plasma protein expression
20237 citationsauthor #10
Adipocytes regulate fibroblast function, and their loss contributes to fibroblast dysfunction in inflammatory diseases
20233 citationsauthor #14
Mapping the dynamic genetic regulatory architecture of HLA genes at single-cell resolution
202316 citationsauthor #27
High-dimensional phenotyping to define the genetic basis of cellular morphology
202329 citationsauthor #17
Correction to: A framework for employing longitudinally collected multicenter electronic health records to stratify heterogeneous patient populations on disease history
20220 citationsauthor #3
TCR-sequencing in cancer and autoimmunity: barcodes and beyond.
202242 citationsauthor #8
A statistical genetics guide to identifying HLA alleles driving complex disease
20225 citationsauthor #18
Proceedings of the 2021 GRAPPA-Collaborative Research Network (CRN) Meeting.
20220 citationsauthor #3
Rheumatoid Arthritis Synovial Inflammation Quantification Using Computer Vision
20225 citationsauthor #9
Type 2 Inflammation Drives an Airway Basal Stem Cell Program Through Insulin Receptor Substrate Signaling
202224 citationsauthor #13
Human Leukocyte Antigen Contributes to Childhood Endemic Burkitt Lymphoma in Eastern Africa: A Case-Control Association Study
20220 citationsauthor #50
Granzyme K+ CD8 T cells form a core population in inflamed human tissue
2022184 citationsauthor #19
Non-coding autoimmune risk variant accelerates T peripheral helper cell development via ICOS
20221 citationsauthor #14
Author Correction: Perspectives on ENCODE
20220 citationsauthor #352
1107 Immune cell heterogeneity in lupus nephritis kidneys and its relation to histopathological features: lessons from the accelerating medicines partnership (AMP) in SLE Consortium
20220 citationsauthor #43
Multi-ancestry genome-wide association analyses identify novel genetic mechanisms in rheumatoid arthritis
2022238 citationsauthor #90
Orgo-Seq integrates single-cell and bulk transcriptomic data to identify cell type specific-driver genes associated with autism spectrum disorder
202216 citationsauthor #16
Tissue-specific enhancer–gene maps from multimodal single-cell data identify causal disease alleles
202237 citationsauthor #91
Repertoire analyses reveal T cell receptor sequence features that influence T cell fate
202246 citationsauthor #9
A framework for employing longitudinally collected multicenter electronic health records to stratify heterogeneous patient populations on disease history
20223 citationsauthor #3
1112 Change in urinary biomarkers at three months predicts 1-year treatment response of lupus nephritisbetter than proteinuria
20220 citationsauthor #19
Monocytes transition to macrophages within the inflamed vasculature via monocyte CCR2 and endothelial TNFR2
202255 citationsauthor #10
Iterative transcription factor screening enables rapid generation of microglia-like cells from human iPSC
202212 citationsauthor #17
Higher native Peruvian genetic ancestry proportion is associated with tuberculosis progression risk
20228 citationsauthor #14
Genetics are not likely to offer clinically useful predictions for elevated liver enzyme levels in patients using low dose methotrexate.
20221 citationsauthor #3
Association with HLA-DRβ1 position 37 distinguishes juvenile dermatomyositis from adult-onset myositis
20228 citationsauthor #18
Single-cell eQTL models reveal dynamic T cell state dependence of disease loci
2022155 citationsauthor #14
Identification of a regulatory pathway governing TRAF1 via an arthritis-associated non-coding variant
20227 citationsauthor #20
Cellular deconstruction of inflamed synovium defines diverse inflammatory phenotypes in rheumatoid arthritis
202231 citationsauthor #46
2002 Distinct intrarenal monocyte and macrophage populations differentiate into a common phagocytic state that is associated with histopathologic kidney injury in human lupus nephritis
20220 citationsauthor #13
Inferring gene regulation from stochastic transcriptional variation across single cells at steady state
202225 citationsauthor #16
Author Correction: Perspectives on ENCODE
20220 citationsauthor #352
Covarying neighborhood analysis identifies cell populations associated with phenotypes of interest from single-cell transcriptomics
202133 citationsauthor #9
The Power of Systems Biology: Insights on Lupus Nephritis from the Accelerating Medicines Partnership.
202111 citationsauthor #2
Trans-ancestry genome-wide association study identifies novel genetic mechanisms in rheumatoid arthritis
202114 citationsauthor #90
Axes of inter-sample variability among transcriptional neighborhoods reveal disease-associated cell states in single-cell data
20213 citationsauthor #9
A high-resolution HLA reference panel capturing global population diversity enables multi-ancestry fine-mapping in HIV host response
2021127 citationsauthor #34
Mapping the human genetic architecture of COVID-19
2021797 citationsauthor #576
Repertoire analyses reveal TCR sequence features that influence T cell fate
20212 citationsauthor #8
FcγR engagement reprograms neutrophils into antigen cross-presenting cells that elicit acquired anti-tumor immunity
202194 citationsauthor #14
IL-1-driven stromal–neutrophil interactions define a subset of patients with inflammatory bowel disease that does not respond to therapies
2021207 citationsauthor #33
Medical Records-Based Genetic Studies of the Complement System
202112 citationsauthor #11
Cross-tissue, single-cell stromal atlas identifies shared pathological fibroblast phenotypes in four chronic inflammatory diseases
2021174 citationsauthor #25
A sex-specific evolutionary interaction between ADCY9 and CETP
20219 citationsauthor #13
Genome editing to define the function of risk loci and variants in rheumatic disease
202110 citationsauthor #5
Transethnic analysis of the human leukocyte antigen region for ulcerative colitis reveals not only shared but also ethnicity-specific disease associations
202130 citationsauthor #36
Estimating heritability and its enrichment in tissue-specific gene sets in admixed populations
202171 citationsauthor #11
Accurate imputation of human leukocyte antigens with CookHLA
202136 citationsauthor #7
Maximizing statistical power to detect differentially abundant cell states with scPOST
20213 citationsauthor #7
Modeling memory T cell states at single-cell resolution identifies in vivo state-dependence of eQTLs influencing disease
20212 citationsauthor #13
Multimodal platform for assessing drug distribution and response in clinical trials.
202110 citationsauthor #20
Multimodally profiling memory T cells from a tuberculosis cohort identifies cell state associations with demographics, environment, and disease
202179 citationsauthor #19
IFN-γ and TNF-α drive a CXCL10+ CCL2+ macrophage phenotype expanded in severe COVID-19 lungs and inflammatory diseases with tissue inflammation
202126 citationsauthor #9
Leveraging single-cell ATAC-seq to identify disease-critical fetal and adult brain cell types
20216 citationsauthor #5
IL-1-driven stromal-neutrophil interaction in deep ulcers defines a pathotype of therapy non-responsive inflammatory bowel disease
20215 citationsauthor #24
Polygenic enrichment distinguishes disease associations of individual cells in single-cell RNA-seq data
2021177 citationsauthor #13
Urine Proteomics and Renal Single‐Cell Transcriptomics Implicate Interleukin‐16 in Lupus Nephritis
202165 citationsauthor #19
Prescriptive analytics for impulsive behaviour prevention using real-time biometrics
20216 citationsauthor #1
New susceptibility loci for severe COVID-19 by detailed GWAS analysis in European populations
202127 citationsauthor #271
IFN-γ and TNF-α drive a CXCL10+ CCL2+ macrophage phenotype expanded in severe COVID-19 lungs and inflammatory diseases with tissue inflammation
2021166 citationsauthor #9
Higher Native Peruvian ancestry proportion is associated with tuberculosis progression risk
20201 citationsauthor #14
Multimodal Profiling of 500,000 Memory T Cells from a Tuberculosis Cohort Identifies Cell State Associations with Demographics, Environment, and Disease
20203 citationsauthor #17
Perspectives on ENCODE
2020144 citationsauthor #352
Maximizing statistical power to detect clinically associated cell states with scPOST
20203 citationsauthor #7
FRI0585 HIGH-THROUGHPUT METHODOLOGY FOR EMR-BASED IDENTIFICATION OF CLINICAL SUB-PHENOTYPES IN COMPLEX PATIENT POPULATIONS
20200 citationsauthor #4
RNA Identification of PRIME Cells Predicting Rheumatoid Arthritis Flares.
2020137 citationsauthor #10
Genome-wide Study Identifies Association between HLA-B∗55:01 and Self-Reported Penicillin Allergy
202043 citationsauthor #59
Trans-ethnic analysis of the human leukocyte antigen region for ulcerative colitis reveals shared but also ethnicity-specific disease associations
20208 citationsauthor #36
Using genetics to prioritize diagnoses for rheumatology outpatients with inflammatory arthritis
202042 citationsauthor #10
University of Birmingham Notch signalling drives synovial fibroblast identity and arthritis pathology
202051 citationsauthor #16
A positively selected FBN1 missense variant reduces height in Peruvian individuals
202040 citationsauthor #26
Efficient and precise single-cell reference atlas mapping with Symphony
2020178 citationsauthor #9
Synoviocyte-targeted therapy synergizes with TNF inhibition in arthritis reversal
202058 citationsauthor #25
Improving the trans-ancestry portability of polygenic risk scores by prioritizing variants in predicted cell-type-specific regulatory elements
2020152 citationsauthor #12
Data integration of bulk and single-cell transcriptomics from cerebral organoids and post-mortem brains to identify cell types and cell type specific driver genes in autism
20200 citationsauthor #14
In silico integration of thousands of epigenetic datasets into 707 cell type regulatory annotations improves the trans-ethnic portability of polygenic risk scores
20204 citationsauthor #10
Patient-reported wellbeing and clinical disease measures over time captured by multivariate trajectories of disease activity in individuals with juvenile idiopathic arthritis in the UK: a multicentre prospective longitudinal study
202020 citationsauthor #39
Allele-specific expression changes dynamically during T cell activation in HLA and other autoimmune loci
202018 citationsauthor #18
CUX1 and IκBζ (NFKBIZ) mediate the synergistic inflammatory response to TNF and IL-17A in stromal fibroblasts
202065 citationsauthor #9
Disruptive innovation in rheumatology: new networks of global public–private partnerships are needed to take advantage of scientific progress
20202 citationsauthor #14
IFN-γ and TNF-α drive a CXCL10+ CCL2+ macrophage phenotype expanded in severe COVID-19 and other diseases with tissue inflammation
202027 citationsauthor #9

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