R. Blekhman

How longitudinal data can contribute to our understanding of host genetic effects on the gut microbiome
202316 citationsauthor #2
Human milk variation is shaped by maternal genetics and impacts the infant gut microbiome
202319 citationsauthor #15
Microbes with higher metabolic independence are enriched in human gut microbiomes under stress
202330 citationsauthor #8
ESTROGEN AND PROGESTERONE CONCENTRATIONS PREDICT GUT MICROBIOME COMPOSITION THROUGHOUT REPRODUCTIVE STATES IN FEMALE BABOONS
20230 citationsauthor #5
Human Cytomegalovirus in breast milk is associated with milk composition, the infant gut microbiome, and infant growth
20231 citationsauthor #13
Identification of shared and disease-specific host gene–microbiome associations across human diseases using multi-omic integration
2022121 citationsauthor #9
Universal gut microbial relationships in the gut microbiome of wild baboons
202215 citationsauthor #10
Public human microbiome data are dominated by highly developed countries
2022127 citationsauthor #3
BiomeHorizon: Visualizing Microbiome Time Series Data in R
202111 citationsauthor #3
Multi-omics analyses show disease, diet, and transcriptome interactions with the virome.
202149 citationsauthor #10
Shared and disease-specific host gene-microbiome interactions across human diseases
20211 citationsauthor #9
A global metagenomic map of urban microbiomes and antimicrobial resistance
2021266 citationsauthor #32
Erratum for Gomez et al., “Plasticity in the Human Gut Microbiome Defies Evolutionary Constraints”
20211 citationsauthor #20
The gut microbiome in konzo
202112 citationsauthor #20
Public human microbiome data dominated by highly developed countries
202125 citationsauthor #3
Gut microbiome heritability is nearly universal but environmentally contingent
2021173 citationsauthor #21
Codiversification of gut microbiota with humans
2021151 citationsauthor #16
Synchrony and idiosyncrasy in the gut microbiome of wild baboons
202136 citationsauthor #22
Longitudinal Multi-omics Reveals Subset-Specific Mechanisms Underlying Irritable Bowel Syndrome.
2020332 citationsauthor #25
Longitudinal Multi-omics Reveals Subset-Specific Mechanisms Underlying Irritable Bowel Syndrome.
202053 citationsauthor #25
Traditional Human Populations and Nonhuman Primates Show Parallel Gut Microbiome Adaptations to Analogous Ecological Conditions
202019 citationsauthor #9
Author response: International authorship and collaboration across bioRxiv preprints
20200 citationsauthor #3
International authorship and collaboration across bioRxiv preprints
202023 citationsauthor #3
Microbial control of host gene regulation and the evolution of host-microbiome interactions in primates: Primate gene regulation & the microbiome
20200 citationsauthor #3
Interspecies variation in hominid gut microbiota controls host gene regulation
202013 citationsauthor #13
Microbial control of host gene regulation and the evolution of host–microbiome interactions in primates
202024 citationsauthor #3
Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment
2019188 citationsauthor #46
Changes in the Gut Microbiome Contribute to Changes in Tissue Gene Expression in Rats Fed Prebiotic Dietary Fibers (P15-022-19).
20190 citationsauthor #2
The Wild Primate Microbiome Partially Protects Against Obesity
20190 citationsauthor #8
Rxivist.org: Sorting biology preprints using social media and readership metrics
201912 citationsauthor #2
Global Genetic Cartography of Urban Metagenomes and Anti-Microbial Resistance
201933 citationsauthor #31
Improving the usability and archival stability of bioinformatics software
201972 citationsauthor #4
Megaphages infect Prevotella and variants are widespread in gut microbiomes
2019180 citationsauthor #10
Population dynamics of the human gut microbiome: change is the only constant
201943 citationsauthor #2
Interactions between the gut microbiome and host gene regulation in cystic fibrosis
201993 citationsauthor #5
Genes, geology and germs: gut microbiota across a primate hybrid zone are explained by site soil properties, not host species
2019113 citationsauthor #4
Challenges and recommendations to improve the installability and archival stability of omics computational tools
201970 citationsauthor #17
Plasticity in the Human Gut Microbiome Defies Evolutionary Constraints
201955 citationsauthor #21
Mapping gastrointestinal gene expression patterns in wild primates and humans via fecal RNA-seq
201911 citationsauthor #11
Erratum for Grieneisen and Blekhman, “Crowdsourcing Our National Gut”
20181 citationsauthor #2
Transposon mutagenesis screen in mice identifies TM9SF2 as a novel colorectal cancer oncogene
201826 citationsauthor #10
Functional Genomics of Host-Microbiome Interactions in Humans.
201871 citationsauthor #5
Colorectal cancer mutational profiles correlate with defined microbial communities in the tumor microenvironment
201876 citationsauthor #9
Crowdsourcing Our National Gut
20188 citationsauthor #2
Integrating tumor genomics into studies of the microbiome in colorectal cancer
201815 citationsauthor #2
Host microbe interactions in the primate gut: Implications for human origins
20181 citationsauthor #5
Gut microbiota composition impacts host gene expression by changing chromatin accessibility
20181 citationsauthor #8
Distinct microbes, metabolites, and ecologies define the microbiome in deficient and proficient mismatch repair colorectal cancers
2018114 citationsauthor #19
A comprehensive analysis of the usability and archival stability of omics computational tools and resources
201819 citationsauthor #16
Gut microbiota diversity across ethnicities in the United States
2018270 citationsauthor #3
The gut microbiome of nonhuman primates: Lessons in ecology and evolution
2018127 citationsauthor #6
Wild Primate Gut Microbiota Protect Against Obesity
20171 citationsauthor #6
The Evolution of Host-microbiome Interactions in Humans
20170 citationsauthor #1
Complex Adaptive Forces Shape Skin Barrier Evolution in Humans
20170 citationsauthor #7
Archaic Hominin Introgression in Africa Contributes to Functional Salivary MUC7 Genetic Variation
201755 citationsauthor #7
Variation in gut microbiota composition impacts host gene expression
20172 citationsauthor #8
Host Genomic Control of the Microbiome
20170 citationsauthor #1
BugBase predicts organism-level microbiome phenotypes
2017373 citationsauthor #9
Interaction between Host MicroRNAs and the Gut Microbiota in Colorectal Cancer
2017106 citationsauthor #4
Gut Microbiota Has a Widespread and Modifiable Effect on Host Gene Regulation
201786 citationsauthor #10
Common methods for fecal sample storage in field studies yield consistent 1 ! signatures of individual identity in microbiome sequencing data 2 !
201650 citationsauthor #1
Genetic Ancestry and Natural Selection Drive Population Differences in Immune Responses to Pathogens.
2016465 citationsauthor #13
Discrete mutations in colorectal cancer correlate with defined microbial communities in the tumor microenvironment
20164 citationsauthor #6
Erratum: Temporal variation selects for diet-microbe co-metabolic traits in the gut of Gorilla spp (The ISME Journal (2016) 10, 532; (DOI:10.1038/ismej.2015.252))
20166 citationsauthor #14
Temporal variation selects for diet–microbe co-metabolic traits in the gut of Gorilla spp
20167 citationsauthor #14
Genetic and Transcriptional Analysis of Human Host Response to Healthy Gut Microbiota
201642 citationsauthor #6
Recent evolution of the salivary mucin MUC7
201634 citationsauthor #6
HOMINID: a framework for identifying associations between host genetic variation and microbiome composition
201614 citationsauthor #9
Atopic Dermatitis Susceptibility Variants in Filaggrin Hitchhike Hornerin Selective Sweep
201641 citationsauthor #6
Common methods for fecal sample storage in field studies yield consistent signatures of individual identity in microbiome sequencing data
201634 citationsauthor #1
Evolution of MUC7: Insights into human salivary adaptation
20160 citationsauthor #7
Gut Microbiome of Coexisting BaAka Pygmies and Bantu Reflects Gradients of Traditional Subsistence Patterns.
2016228 citationsauthor #22
Author response: Social networks predict gut microbiome composition in wild baboons
20155 citationsauthor #9
Social behavior and the
20151 citationsauthor #6
Host genetic variation impacts microbiome composition across human body sites
2015671 citationsauthor #1
Variation in Rural African Gut Microbiota Is Strongly Correlated with Colonization by Entamoeba and Subsistence
2015201 citationsauthor #7
Temporal variation selects for diet–microbe co-metabolic traits in the gut of Gorilla spp
201596 citationsauthor #14
Host genetic variation impacts microbiome composition across human body sites
20158 citationsauthor #1
Variation in rural African gut microbiomes is strongly shaped by parasitism and diet 1 2
20158 citationsauthor #7
Ecological and evolutionary adaptations shape the gut microbiome of BaAka African rainforest hunter-gatherers
20152 citationsauthor #19
Population Genomic Analysis of 962 Whole Genome Sequences of Humans Reveals Natural Selection in Non-Coding Regions
201515 citationsauthor #8
Social networks predict gut microbiome composition in wild baboons
2015480 citationsauthor #9
Comparative metabolomics in primates reveals the effects of diet and gene on metabolic divergence.
20140 citationsauthor #1
Human genetics shape the gut microbiome.
20142,705 citationsauthor #6
Virulence genes are a signature of the microbiome in the colorectal tumor microenvironment
2014197 citationsauthor #5
Comparative metabolomics in primates reveals the effects of diet and gene regulatory variation on metabolic divergence
201423 citationsauthor #1
A database of orthologous exons in primates for comparative analysis of RNA-seq data
20126 citationsauthor #1
Gene Expression Differences Among Primates Are Associated With Changes in a Histone Epigenetic Modification
201196 citationsauthor #2
Abstract LB-332: MDM4 transcription is discordantly regulated by common variants of p53
20100 citationsauthor #4
Functional Comparison of Innate Immune Signaling Pathways in Primates
2010102 citationsauthor #3
Sex-specific and lineage-specific alternative splicing in primates.
2010287 citationsauthor #1
Correction: Gene Regulation in Primates Evolves under Tissue-Specific Selection Pressures
20091 citationsauthor #1
Segmental Duplications Contribute to Gene Expression Differences Between Humans and Chimpanzees
200927 citationsauthor #1
Gene Regulation in Primates Evolves under Tissue-Specific Selection Pressures
2008163 citationsauthor #1
A Combination of Genomic Approaches Reveals the Role of FOXO1a in Regulating an Oxidative Stress Response Pathway
200852 citationsauthor #2
SPIKE – a database, visualization and analysis tool of cellular signaling pathways
200868 citationsauthor #10
A signature of evolutionary constraint on a subset of ectopically expressed olfactory receptor genes.
200871 citationsauthor #2
Selective Constraints in Experimentally Defined Primate Regulatory Regions
200824 citationsauthor #2
An Evolutionarily Conserved Sexual Signature in the Primate Brain
200894 citationsauthor #4
Natural selection on genes that underlie human disease susceptibility.
2008236 citationsauthor #1

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