Markus J. Herrgård

Data sharing restrictions are hampering precision health in the European Union
20258 citationsauthor #6
Oral supplementation of nicotinamide riboside alters intestinal microbial composition in rats and mice, but not humans
202316 citationsauthor #22
Laboratory evolution reveals general and specific tolerance mechanisms for commodity chemicals.
202342 citationsauthor #20
Cell-free fetal DNA for genetic evaluation in Copenhagen Pregnancy Loss Study (COPL): a prospective cohort study.
202325 citationsauthor #16
Leveraging high-resolution omics data for predicting responses and adverse events to immune checkpoint inhibitors
20235 citationsauthor #3
Membrane transporter identification and modulation via adaptive laboratory evolution.
202227 citationsauthor #7
The BioInnovation Institute as a catalyst for European life science startup creation
20220 citationsauthor #2
Identification and Engineering of Transporters for Efficient Melatonin Production in Escherichia coli
202212 citationsauthor #9
An automated workflow for multi-omics screening of microbial model organisms
202210 citationsauthor #11
Genome-scale metabolic modelling of P. thermoglucosidasius NCIMB 11955 reveals metabolic bottlenecks in anaerobic metabolism
20212 citationsauthor #5
Genome-scale metabolic modeling of P. thermoglucosidasius NCIMB 11955 reveals metabolic bottlenecks in anaerobic metabolism.
202119 citationsauthor #5
Corrigendum: Multi-Omics Analysis of Fatty Alcohol Production in Engineered Yeasts Saccharomyces cerevisiae and Yarrowia lipolytica
20212 citationsauthor #11
Microbial community dynamics revisited
20216 citationsauthor #2
Adaptive laboratory evolution of Pseudomonas putida KT2440 improves p-coumaric and ferulic acid catabolism and tolerance
2020101 citationsauthor #11
Elucidating aromatic acid tolerance at low pH in Saccharomyces cerevisiae using adaptive laboratory evolution
202074 citationsauthor #4
Fluctuations in glucose availability prevent global proteome changes and physiological transition during prolonged chemostat cultivations of Saccharomyces cerevisiae
202019 citationsauthor #8
Benchmarking kinetic models of Escherichia coli metabolism
20203 citationsauthor #4
Dietary Change Enables Robust Growth-Coupling of Heterologous Methyltransferase Activity in Yeast.
20204 citationsauthor #6
Directed Metabolic Pathway Evolution Enables Functional Pterin-Dependent Aromatic-Amino-Acid Hydroxylation in Escherichia coli.
202016 citationsauthor #6
Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing
20208 citationsauthor #24
A dual-reporter system for investigating and optimizing protein translation and folding in E. coli
202035 citationsauthor #7
MEMOTE for standardized genome-scale metabolic model testing
2020408 citationsauthor #24
Microbial Synthesis of Human-Hormone Melatonin at Gram Scales.
202032 citationsauthor #5
SmartPeak automates targeted and quantitative metabolomics data processing
202029 citationsauthor #12
Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing
20200 citationsauthor #24
Combining Environmental and Economic Performance for Bioprocess Optimization.
202076 citationsauthor #3
CRISPR interference of nucleotide biosynthesis improves production of a single‐domain antibody in Escherichia coli
202015 citationsauthor #4
Memote: A community-driven effort towards a standardized genome-scale metabolic model test suite
20200 citationsauthor #24
Addressing environmental sustainability of biochemicals
2020155 citationsauthor #2
OptCouple: Joint simulation of gene knockouts, insertions and medium modifications for prediction of growth-coupled strain designs
201942 citationsauthor #5
Coupling S-adenosylmethionine–dependent methylation to growth: Design and uses
201950 citationsauthor #13
Linking genetic, metabolic, and phenotypic diversity among Saccharomyces cerevisiae strains using multi-omics associations
201936 citationsauthor #8
Integration of enzymatic data in Bacillus subtilis genome-scale metabolic model improves phenotype predictions and enables in silico design of poly-γ-glutamic acid production strains
201966 citationsauthor #8
Apr 28, 2019 Integration of enzymatic data in Bacillus subtilis genome-scale metabolic model improves phenotype predictions and enables in silico design of poly--glutamic
20190 citationsauthor #8
Adaptive laboratory evolution reveals general and specific chemical tolerance mechanisms and enhances biochemical production
201912 citationsauthor #18
Multi-Omics Analysis of Fatty Alcohol Production in Engineered Yeasts Saccharomyces cerevisiae and Yarrowia lipolytica
201938 citationsauthor #11
Author Correction: Building a global alliance of biofoundries
20194 citationsauthor #12
A metabolic reconstruction of Lactobacillus reuteri JCM 1112 and analysis of its potential as a cell factory
201937 citationsauthor #5
Adaptive laboratory evolution of tolerance to dicarboxylic acids in Saccharomyces cerevisiae.
201986 citationsauthor #6
Building a global alliance of biofoundries
2019254 citationsauthor #12
Generation of an E. coli platform strain for improved sucrose utilization using adaptive laboratory evolution
201933 citationsauthor #7
A genome-scale metabolic model for Methylococcus capsulatus predicts reduced efficiency uphill electron transfer to pMMO
20186 citationsauthor #5
Computational Methods to Assess the Production Potential of Bio-Based Chemicals.
20186 citationsauthor #4
Memote: A community driven effort towards a standardized genome-scale metabolic model test suite
201853 citationsauthor #24
MARSI: metabolite analogues for rational strain improvement
20185 citationsauthor #6
Selecting the Best: Evolutionary Engineering of Chemical Production in Microbes
201833 citationsauthor #5
Microbial Methylotrophic Metabolism: Recent Metabolic Modeling Efforts and Their Applications In Industrial Biotechnology
201814 citationsauthor #2
Apr 26, 2019 Cameo: A Python Library for Computer Aided Metabolic Engineering and Optimization
201826 citationsauthor #6
Analysis of Pseudomonas putida growth on non‐trivial carbon sources using transcriptomics and genome‐scale modelling
20188 citationsauthor #5
A Genome-Scale Metabolic Model for Methylococcus capsulatus (Bath) Suggests Reduced Efficiency Electron Transfer to the Particulate Methane Monooxygenase
201850 citationsauthor #5
RapidRIP quantifies the intracellular metabolome of 7 industrial strains of E. coli.
201831 citationsauthor #5
Enhancing Metabolic Models with Genome-Scale Experimental Data
20185 citationsauthor #3
Generation of a platform strain for ionic liquid tolerance using adaptive laboratory evolution
201762 citationsauthor #4
Cameo: A Python Library for Computer Aided Metabolic Engineering and Optimization of Cell Factories
201751 citationsauthor #8
Development and application of computer-aided design methods for cell factory optimization
20170 citationsauthor #3
Measuring and increasing the sustainability of biochemicals: contrasting feedstock´s, biorefinery processes, and upscaling
20170 citationsauthor #2
Increased production of L-serine in Escherichia coli through Adaptive Laboratory Evolution.
2017130 citationsauthor #8
Isolation and characterization of the E. coli membrane protein production strain Mutant56(DE3)
201749 citationsauthor #7
DD-DeCaF: Data-Driven Design of Cell Factories and Communities
20170 citationsauthor #7
Systems biology solutions for biochemical production challenges.
201735 citationsauthor #4
Predictable tuning of protein expression in bacteria
2016125 citationsauthor #8
Bio-based chemicals - green, but also sustainable?
20160 citationsauthor #2
Engineering and systems-level analysis of Saccharomyces cerevisiae for production of 3-hydroxypropionic acid via malonyl-CoA reductase-dependent pathway
2016112 citationsauthor #12
EasyCloneMulti: A Set of Vectors for Simultaneous and Multiple Genomic Integrations in Saccharomyces cerevisiae
201666 citationsauthor #6
Stoichiometric Representation of Gene–Protein–Reaction Associations Leverages Constraint-Based Analysis from Reaction to Gene-Level Phenotype Prediction
201674 citationsauthor #2
Current Challenges in Modeling Cellular Metabolism
20161 citationsauthor #4
Genome‐Scale Models
201614 citationsauthor #4
Multi-omics Quantification of Species Variation of Escherichia coli Links Molecular Features with Strain Phenotypes.
2016133 citationsauthor #7
Multi-scale exploration of the technical, economic, and environmental dimensions of bio-based chemical production.
201536 citationsauthor #2
Pharmacogenomic and clinical data link non-pharmacokinetic metabolic dysregulation to drug side effect pathogenesis
201546 citationsauthor #6
A multi-scale, multi-disciplinary approach for assessing the technological, economic and environmental performance of bio-based chemicals.
20154 citationsauthor #1
Co-evolution of strain design methods based on flux balance and elementary mode analysis
201574 citationsauthor #2
Multi-Scale Technoeconomic Framework for Assessing Viability of Emerging Bio-based Processes
20150 citationsauthor #4
Transcriptional vs post-transcriptional regulation of the central carbon metabolism of E. coli
20150 citationsauthor #3
Title : Multi-scale Exploration of the Technical , Economic , and Environmental Dimensions of Bio-based Chemical Production Short Title : Multi-scale exploration of biochemical production
20150 citationsauthor #2
Do genome-scale models need exact solvers or clearer standards?
201564 citationsauthor #13
Seven gene deletions in seven days: Fast generation of Escherichia coli strains tolerant to acetate and osmotic stress
2015108 citationsauthor #3
Analysis of gene essentiality in Escherichia coli across strains and growth conditions
20150 citationsauthor #5
Editorial: Current Challenges in Modeling Cellular Metabolism
20157 citationsauthor #4
Modeling the Contribution of Allosteric Regulation for Flux Control in the Central Carbon Metabolism of E. coli
201540 citationsauthor #2
Transient overexpression of DNA adenine methylase enables efficient and mobile genome engineering with reduced off-target effects
201553 citationsauthor #6
Enhanced Protein Production in Escherichia coli by Optimization of Cloning Scars at the Vector-Coding Sequence Junction.
201558 citationsauthor #5
Modelling allosteric regulation for prediction of flux control in the central carbon metabolism of E. coli
20150 citationsauthor #2
Analysis of Genetic Variation and Potential Applications in Genome-Scale Metabolic Modeling
201530 citationsauthor #3
Establishing a synthetic pathway for high-level production of 3-hydroxypropionic acid in Saccharomyces cerevisiae via β-alanine.
2015208 citationsauthor #9
Evolution reveals a glutathione-dependent mechanism of 3-hydroxypropionic acid tolerance.
201481 citationsauthor #9
Putting computational modeling at the fingertips of bench biologists
20140 citationsauthor #2
Evolution of Escherichia coli to 42 °C and Subsequent Genetic Engineering Reveals Adaptive Mechanisms and Novel Mutations
2014161 citationsauthor #6
Evolution Reveals A Glutathione-dependent Mechanism Of 3-hydroxypropionic Acid Detoxification
20144 citationsauthor #9
Systematic Evaluation of Methods for Integration of Transcriptomic Data into Constraint-Based Models of Metabolism
2014392 citationsauthor #2
Biotechnology for renewable chemicals
20140 citationsauthor #7
Library sequencing strategies for comparative analysis of stress resistance mechanisms in Escherichia coli strains
20140 citationsauthor #4
Increased tolerance towards serine obtained by adaptive laboratory evolution
20140 citationsauthor #4
Combinatorial Strategies for Improving Multiple-Stress Resistance in Industrially Relevant Escherichia coli Strains
201437 citationsauthor #2
A kinetic model of thiamine biosynthesis in Escherichia coli
20140 citationsauthor #2
Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
201385 citationsauthor #4
TheYNP metagenome project : environmental parameters responsible for microbial distribution in theYellowstone geothermal ecosystem
20131 citationsauthor #4
The Uses and Future Prospects of Metabolomics and Targeted Metabolite Profiling in Cell Factory Development
20134 citationsauthor #2
The YNP Metagenome Project: Environmental Parameters Responsible for Microbial Distribution in the Yellowstone Geothermal Ecosystem
2013201 citationsauthor #4
Multi‐scale modeling for sustainable chemical production
201317 citationsauthor #3

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