R. Finkers

Graph-based pangenomes and pan-phenome provide a cornerstone for eggplant biology and breeding
20256 citationsauthor #15
The genome of Lupinus mutabilis: Evolution and genetics of an emerging bio-based crop.
20244 citationsauthor #5
Allelic variation in the autotetraploid potato: genes involved in starch and steroidal glycoalkaloid metabolism as a case study
20245 citationsauthor #5
Chromosome level assembly of wild spinach provides insights into the divergence of homo- and heteromorphic plant sex-chromosomes
20231 citationsauthor #8
Diversity and genetic architecture of agro-morphological traits in a core collection of European traditional tomato
20235 citationsauthor #15
Fine mapping of meiotic crossovers in Brassica oleracea reveals patterns and variations depending on direction and combination of crosses.
20239 citationsauthor #4
Multi-year field trials provide a massive repository of trait data on a highly diverse population of tomato and uncover novel determinants of tomato productivity.
202313 citationsauthor #11
Analysis of >3400 worldwide eggplant accessions reveals two independent domestication events and multiple migration-diversification routes.
202313 citationsauthor #19
Multi-environment association study highlights candidate genes for robust agronomic quantitative trait loci in a novel worldwide Capsicum core collection.
202327 citationsauthor #12
The benefits and struggles of FAIR data: the case of reusing plant phenotyping data
202314 citationsauthor #4
High-Density Linkage Map Constructed from a Skim Sequenced Diploid Potato Population Reveals Transmission Distortion and QTLs for Tuber Yield and Pollen Shed
202312 citationsauthor #7
Exploring tomato phenotypic variability under combined nitrogen and water deficit
20239 citationsauthor #5
Recommendations for the formatting of Variant Call Format (VCF) files to make plant genotyping data FAIR
20227 citationsauthor #8
Chromosome-scale genome assemblies of five different Brassica oleracea morphotypes provide insights in intraspecific diversification
20220 citationsauthor #3
Phased, chromosome-scale genome assemblies of tetraploid potato reveals a complex genome, transcriptome, and predicted proteome landscape underpinning genetic diversity.
2022118 citationsauthor #48
Smooth Descent: A ploidy-aware algorithm to improve linkage mapping in the presence of genotyping errors
20225 citationsauthor #5
Atlas of phenotypic, genotypic and geographical diversity present in the European traditional tomato
202226 citationsauthor #22
Phenotyping of a diverse tomato collection for postharvest shelf-life
202211 citationsauthor #8
European traditional tomatoes galore: a result of farmers’ selection of a few diversity-rich loci
20224 citationsauthor #18
Genetic polyploid phasing from low-depth progeny samples
20221 citationsauthor #3
The world vegetable center amaranthus germplasm collection: Core collection development and evaluation of agronomic and nutritional traits
202219 citationsauthor #5
Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspring data
202221 citationsauthor #3
Insights from the first genome assembly of Onion (Allium cepa)
202161 citationsauthor #1
PBR/pedigreeSim: PedigreeSim 2.2: with meiotic configuration files
20210 citationsauthor #2
Global range expansion history of pepper (Capsicum spp.) revealed by over 10,000 genebank accessions
202192 citationsauthor #20
De novo whole-genome assembly of Chrysanthemum makinoi, a key wild chrysanthemum
202118 citationsauthor #7
ELIXIR Plant sciences 2020-2023 Roadmap
20212 citationsauthor #5
European Vintage tomatoes galore: a result of farmers combinatorial assorting/swapping of a few diversity rich loci
20211 citationsauthor #18
De novo whole-genome assembly of Chrysanthemum makinoi, a key wild ancestor to hexaploid Chrysanthemum
20210 citationsauthor #7
Extracting knowledge networks from plant scientific literature: potato tuber flesh color as an exemplary trait
20206 citationsauthor #8
The genetic and functional analysis of flavor in commercial tomato: the FLORAL4 gene underlies a QTL for floral aroma volatiles in tomato fruit
202040 citationsauthor #5
Solyntus, the New Highly Contiguous Reference Genome for Potato (Solanum tuberosum)
202052 citationsauthor #11
Unraveling the biology of important quantitative traits for potato breeding and agriculture
20200 citationsauthor #7
Exploration of a Resequenced Tomato Core Collection for Phenotypic and Genotypic Variation in Plant Growth and Fruit Quality Traits
202041 citationsauthor #7
Linked Data Platform for Solanaceae Species
20204 citationsauthor #9
The Farm Data Train Infrastructure
20200 citationsauthor #7
Enabling reusability of plant phenomic datasets with MIAPPE 1.1
2020110 citationsauthor #12
Addendum: The FAIR Guiding Principles for scientific data management and stewardship
2019115 citationsauthor #19
Haplotype assembly of autotetraploid potato using integer linear programing
20192 citationsauthor #3
OP-CBIO190192 4147..4155
20190 citationsauthor #13
UAV based soil salinity assessment of cropland
2019122 citationsauthor #9
Capsicum spp. and eggplant genome sequencing and resequencing provide new tools for the characterization of genetic resources
20190 citationsauthor #20
BrAPI—an application programming interface for plant breeding applications
201999 citationsauthor #13
Haplotype assembly of autotetraploid potato using integer linear programing
20199 citationsauthor #3
GO FAIR food systems implementation network manifesto – to advance a global data ecosystem for agriculture and food by implementing FAIR data and services
20190 citationsauthor #6
Farm Data Train
20182 citationsauthor #1
Linked Data Platform for Plant Breeding and Genomics
20180 citationsauthor #5
Data standards for plant phenotyping: MIAPPE and its implementations [W785]
20181 citationsauthor #12
Efficient algorithms for polyploid haplotype phasing
201829 citationsauthor #3
QTLTableMiner++: semantic mining of QTL tables in scientific articles
201811 citationsauthor #7
Family-Based Haplotype Estimation and Allele Dosage Correction for Polyploids Using Short Sequence Reads
201817 citationsauthor #3
Haplotype assembly of autotetraploid potato using integer linear programming
20181 citationsauthor #2
TriPoly: haplotype estimation for polyploids using sequencing data of related individuals
201822 citationsauthor #3
Exploring natural genetic variation in tomato sucrose synthases on the basis of increased kinetic properties
201812 citationsauthor #2
Overview of a suite of middle-ware services for implementing FAIR data principles
20172 citationsauthor #11
Managing Variant Calling Files the Big Data Way: Using HDFS and Apache Parquet
20175 citationsauthor #2
Exploiting next-generation sequencing to solve the haplotyping puzzle in polyploids: a simulation study
201725 citationsauthor #2
TriPoly: a haplotype estimation approach for polyploids using sequencing data of related individuals
20172 citationsauthor #3
Overview of a Suite of Tools and Training Material for Implementing FAIR Data Principles
20170 citationsauthor #8
Toward Better Data Sharing Methods for Genebanks
20170 citationsauthor #6
Semantic-mining of tables in scientific articles for trait lead discovery
20160 citationsauthor #5
The FAIR Guiding Principles for scientific data management and stewardship
201614,404 citationsauthor #19
EXPLOITING NEXT GENERATION SEQUENCING TO SOLVE THE HAPLOTYPING PUZZLE IN POLYPLOIDS: A SIMULATION STUDY
201640 citationsauthor #2
Supplementary data: Combined biotic and abiotic stress resistance in tomato
201653 citationsauthor #5
Morphological and genetic characterization of a large collection of Italian tomato landraces
20160 citationsauthor #15
Detection of an inversion in the Ty-2 region between S. lycopersicum and S. habrochaites by a combination of de novo genome assembly and BAC cloning
20150 citationsauthor #4
A de novo assembly for the 16GB Allium cepa genome, tears of joy
20152 citationsauthor #1
Detection of an inversion in the Ty-2 region between S. lycopersicum and S. habrochaites by a combination of de novo genome assembly and BAC cloning
201516 citationsauthor #4
Combining an in vitro reporter gene assay with metabolomics to identify tomato phytochemicals responsible for inducing electrophile-responsive element (EpRE)-mediated gene transcription
20151 citationsauthor #5
Itag2.3 Tomato Genome Annotation, RDF graph
20150 citationsauthor #2
In silico precision breeding using interoperable genome annotations and literature
20150 citationsauthor #5
Combined biotic and abiotic stress resistance in tomato
201514 citationsauthor #5
Assessing the genetic variation of Ty-1 and Ty-3 alleles conferring resistance to tomato yellow leaf curl virus in a broad tomato germplasm
20151 citationsauthor #4
Assessing the genetic variation of Ty-1 and Ty-3 alleles conferring resistance to tomato yellow leaf curl virus in a broad tomato germplasm
201544 citationsauthor #4
Mapping in the era of sequencing: high density genotyping and its application for mapping TYLCV resistance in Solanum pimpinellifolium
201420 citationsauthor #3
A Stringent and Broad Screen of Solanum spp. tolerance Against Erwinia Bacteria Using a Petiole Test
20147 citationsauthor #2
Mapping in the era of sequencing: high density genotyping and its application for mapping TYLCV resistance in Solanum pimpinellifolium
20140 citationsauthor #3
Genebanks and genomics: how to interconnect data from both communities?
20145 citationsauthor #1
Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole-genome sequencing.
2014362 citationsauthor #6
Combining an in vitro reporter gene assay with metabolomics to identify tomato phytochemicals responsible for inducing electrophile-responsive element (EpRE)-mediated gene transcription
20140 citationsauthor #5
Marker2Sequence, release v1.0.0
20140 citationsauthor #1
Semantic Genebanks release v1.0.0
20140 citationsauthor #1
Possibilities and Challenges of the Potato Genome Sequence
201413 citationsauthor #6
Data integration and stewardship centre – tackling the big data challenge in life science research
20140 citationsauthor #6
MQ2: visualizing multi-trait mapped QTL results
20130 citationsauthor #4
A Stringent and Broad Screen of Solanum spp. tolerance Against Erwinia Bacteria Using a Petiole Test
20130 citationsauthor #2
Tomato breeding in the genomics era: insights from a SNP array
201379 citationsauthor #6
The 150 + Tomato Genome ( re-) Sequence Project ; Lessons Learned and Potential Applications
20133 citationsauthor #1
Biosynthesis of Antinutritional Alkaloids in Solanaceous Crops Is Mediated by Clustered Genes
2013500 citationsauthor #10
MQ2: visualizing multi-trait mapped QTL results
20135 citationsauthor #4
Crop Ontology: Vocabulary For Crop-related Concepts
201325 citationsauthor #5
Genetic analysis of metabolites in apple fruits indicates an mQTL hotspot for phenolic compounds on linkage group 16
201286 citationsauthor #8
Using Semantic Web Technology to Accelerate Plant Breeding
20120 citationsauthor #5
Marker2sequence, mine your QTL regions for candidate genes
201215 citationsauthor #4
Identification and mapping of quantitative resistance to late blight (Phytophthora infestans) in Solanum habrochaites LA1777
201146 citationsauthor #4
SolRgene: an online database to explore disease resistance genes in tuber-bearing Solanum species
201143 citationsauthor #2
Seedling salt tolerance in tomato
201142 citationsauthor #5
Mapping and characterization of novel parthenocarpy QTLs in tomato
200873 citationsauthor #6
Quantitative resistance to Botrytis cinerea from Solanum neorickii
200734 citationsauthor #1
Three QTLs for Botrytis cinerea resistance in tomato
200770 citationsauthor #1

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