I. Simon

PROFILE

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Aliases
I Simon, Itamar Simon
Publication record
80 papers · 12,661 citations · H-index 40

PAPERS

Mutational signatures association with replication timing in normal cells reveals similarities and differences with matched cancer tissues
202311 citationsauthor #3
Characterization of Unidirectional Replication Forks in the Mouse Genome
20232 citationsauthor #2
Harnessing DNA replication stress to target RBM10 deficiency in lung adenocarcinoma
202310 citationsauthor #5
RIF1-ASF1-mediated high-order chromatin structure safeguards genome integrity
20220 citationsauthor #10
Mitotic H3K9ac is controlled by phase-specific activity of HDAC2, HDAC3, and SIRT1
202215 citationsauthor #10
Both cell autonomous and non-autonomous processes modulate the association between replication timing and mutation rate
20220 citationsauthor #4
S Phase Duration Is Determined by Local Rate and Global Organization of Replication
202212 citationsauthor #2
RIF1-ASF1-mediated high-order chromatin structure safeguards genome integrity
202123 citationsauthor #10
Chromosomal coordination and differential structure of asynchronous replicating regions
202113 citationsauthor #11
Asynchronous Replication Timing: A Mechanism for Monoallelic Choice During Development
20214 citationsauthor #2
Cancer Mutational Processes Vary in Their Association with Replication Timing and Chromatin Accessibility
202119 citationsauthor #8
The delicate relationship between DNA replication timing and gene expression
20203 citationsauthor #3
Special issue focused on regulatory genomics
20200 citationsauthor #2
Study of mitotic chromatin supports a model of bookmarking by histone modifications and reveals nucleosome deposition patterns
201844 citationsauthor #10
Germline DNA replication timing shapes mammalian genome composition
201836 citationsauthor #15
Biases in the SMART-DNA library preparation method associated with genomic poly dA/dT sequences
201712 citationsauthor #5
Genome-wide Determination of Mammalian Replication Timing by DNA Content Measurement.
20175 citationsauthor #4
Perturbations in the Replication Program Contribute to Genomic Instability in Cancer
201739 citationsauthor #3
Study of mitotic chromatin shows involvement of histone modifications in bookmarking and reveals nucleosome deposition patterns
20172 citationsauthor #9
Persistence to anti-cancer treatments in the stationary to proliferating transition
201636 citationsauthor #3
Distinguishing between stochasticity and determinism: Examples from cell cycle duration variability
201610 citationsauthor #5
The mutation spectrum in genomic late replication domains shapes mammalian GC content
201629 citationsauthor #7
Lineage correlations of single cell division time as a probe of cell-cycle dynamics
2015137 citationsauthor #5
Deterministic Versus Stochastic Variability in the Mammalian Cell Cycle
20140 citationsauthor #4
Integrative Analysis of Methylome and Transcriptome Reveals the Importance of Unmethylated CpGs in Non-CpG Island Gene Activation
201310 citationsauthor #3
Systematic Determination of Replication Activity Type Highlights Interconnections between Replication, Chromatin Structure and Nuclear Localization
201213 citationsauthor #8
Genome-Wide Analysis of Androgen Receptor Targets Reveals COUP-TF1 as a Novel Player in Human Prostate Cancer
201229 citationsauthor #8
Studying and modelling dynamic biological processes using time-series gene expression data
2012479 citationsauthor #3
Competition between small RNAs: a quantitative view.
201250 citationsauthor #3
DECOD: fast and accurate discriminative DNA motif finding
201149 citationsauthor #8
Fusobacteria as a Bridge between Health and Disease: a Metatranscriptomic Approach
20111 citationsauthor #3
Combination of genomic approaches with functional genetic experiments reveals two modes of repression of yeast middle-phase meiosis genes
201013 citationsauthor #8
Integrating multiple evidence sources to predict transcription factor binding in the human genome.
2010114 citationsauthor #3
Modulation of the Vitamin D3 Response by Cancer-Associated Mutant p53 (DOI: 10.1016/j.ccr.2009.11.025)
20104 citationsauthor #12
DNA methylation and gene expression
2010101 citationsauthor #2
Modulation of the vitamin D3 response by cancer-associated mutant p53.
2010239 citationsauthor #12
Comparative Analysis of DNA Replication Timing Reveals Conserved Large-Scale Chromosomal Architecture
2010170 citationsauthor #6
Developmental programming of CpG island methylation profiles in the human genome
2009411 citationsauthor #7
Abstract B2: Coup‐tf1 is suppressed by androgen receptor in prostate cancer epithelial and normal stromal cells
20090 citationsauthor #3
Backup in gene regulatory networks explains differences between binding and knockout results
200961 citationsauthor #6
Genome-wide analysis of the replication program in mammals
200957 citationsauthor #2
Global organization of replication time zones of the mouse genome.
2008161 citationsauthor #7
Genome-wide transcriptional analysis of the human cell cycle identifies genes differentially regulated in normal and cancer cells
2008167 citationsauthor #8
Binding Proteins Genome-Wide Location and Function of DNA
200811 citationsauthor #6
A Combined Expression-Interaction Model for Inferring the Temporal Activity of Transcription Factors
200820 citationsauthor #3
Chromatin immunoprecipitation-on-chip reveals stress-dependent p53 occupancy in primary normal cells but not in established cell lines.
200857 citationsauthor #6
Characterizing Molecular Pathways Which Underlie the Development of Metastases From Uveal Melanoma
20070 citationsauthor #5
Molecular characteristics of liver metastases from uveal melanoma.
200754 citationsauthor #5
Reconstructing dynamic regulatory maps
2007235 citationsauthor #4
Polycomb-mediated methylation on Lys27 of histone H3 pre-marks genes for de novo methylation in cancer
20071,228 citationsauthor #12
Continuous hidden process model for time series expression experiments
200716 citationsauthor #3
Tamoxifen Induces Heparanase Expression in Estrogen Receptor–Positive Breast Cancer
200735 citationsauthor #3
Combined analysis reveals a core set of cycling genes
200743 citationsauthor #5
Evidence for an instructive mechanism of de novo methylation in cancer cells
2006502 citationsauthor #11
An analysis of intra array repeats: the good, the bad and the non informative
200616 citationsauthor #3
Regulation of heparanase expression in breast cancer by estrogen and tamoxifen
20060 citationsauthor #4
Combined static and dynamic analysis for determining the quality of time-series expression profiles
200531 citationsauthor #1
MILANO – custom annotation of microarray results using automatic literature searches
200573 citationsauthor #2
Supplementary Methods for : Combining Static and Time Series Data to Determine the Quality of Expression Profiles in Time Series Experiments
20050 citationsauthor #1
Deconvolving cell cycle expression data with complementary information
200465 citationsauthor #4
Program-specific distribution of a transcription factor dependent on partner transcription factor and MAPK signaling.
2003246 citationsauthor #2
Continuous Representations of Time-Series Gene Expression Data
2003288 citationsauthor #5
Comparing the continuous representation of time-series expression profiles to identify differentially expressed genes
2003145 citationsauthor #3
Systematic analysis of essential yeast TAFs in genome‐wide transcription and preinitiation complex assembly
2003114 citationsauthor #4
Transcriptional Regulatory Networks in Saccharomyces cerevisiae
2002429 citationsauthor #10
A new approach to analyzing gene expression time series data
2002225 citationsauthor #5
The genome-wide localization of Rsc9, a component of the RSC chromatin-remodeling complex, changes in response to stress.
2002157 citationsauthor #2
From promoter sequence to expression: a probabilistic framework
2002128 citationsauthor #3
Supporting online material for : Transcriptional Regulatory Networks in Saccharomyces cerevisiae
20021,820 citationsauthor #10
Developmental regulation of DNA replication timing at the human β globin locus
200185 citationsauthor #1
Serial regulation of transcriptional regulators in the yeast cell cycle.
2001707 citationsauthor #1
Developmental regulation of DNA replication timing at the human beta globin locus.
200140 citationsauthor #1
Genome-wide location and function of DNA binding proteins.
20001,527 citationsauthor #6
Allele-specific expression patterns of interleukin-2 and Pax-5 revealed by a sensitive single-cell RT-PCR analysis.
200082 citationsauthor #3
Asynchronous replication of imprinted genes is established in the gametes and maintained during development
1999182 citationsauthor #1
12 Temporal Order of DNA Replication
199620 citationsauthor #1
Allelic inactivation regulates olfactory receptor gene expression.
19941,055 citationsauthor #2
Higher‐order association of extrachromosomal rDNA genes in Dictyostelium discoideum.
19948 citationsauthor #1
Allele-specific replication timing of imprinted gene regions
1993391 citationsauthor #4
Modulation of the Vitamin D 3 Response by Cancer-Associated Mutant p 53
year unknown40 citationsauthor #12

TIMELINE

1993 391 citations

1994 1,063 citations

1996 20 citations

1999 182 citations

2000 1,609 citations

2001 832 citations

2002 2,759 citations

2003 793 citations

2004 65 citations

2005 104 citations

2006 518 citations

2007 1,611 citations

2008 416 citations

2009 529 citations

2010 641 citations

2011 50 citations

2012 571 citations

2013 10 citations

2014 0 citations

2015 137 citations

2016 75 citations

2017 58 citations

2018 80 citations

2020 3 citations

2021 59 citations

2022 27 citations

2023 23 citations

Unknown 40 citations

I. Simon

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