D. Croll

Chromosome-scale genome assembly of the most abundant ectomycorrhizal fungus Cenococcum geophilum reveals massive TE expansion and RIP defence mechanism.
20260 citationsauthor #10
Massive proliferation of retrotransposons contributes to genome size expansion in species of the Pseudocercospora genus.
20260 citationsauthor #8
Corn rust population genomics reveals a cryptic virulent group and adaptive effectorome
20251 citationsauthor #5
Giant transposons promote strain heterogeneity in a major fungal pathogen
20252 citationsauthor #6
Intra-population variability in genome-wide repressive histone marks underpins differential gene expression in a fungal wheat pathogen
20250 citationsauthor #5
MycoMobilome: A community-focused non-redundant database of transposable element consensus sequences for the fungal kingdom
20250 citationsauthor #2
A conserved fungal transcription factor domain drives protein-protein interactions and necrotrophic effector-mediated virulence in Parastagonospora nodorum
20250 citationsauthor #4
Recurrent chromosome destabilization through repeat-mediated rearrangements in a fungal pathogen
20252 citationsauthor #4
A new molecular seed assay to predict Ustilago nuda field infection levels
20250 citationsauthor #8
Genetic variation among progeny shapes symbiosis in a basidiomycete with poplar
20250 citationsauthor #3
A pangenomics-enabled platform for the high-throughput discovery of antifungal resistance factors in crop pathogens
20250 citationsauthor #8
Revisiting the Evolution and Function of NIP2 Paralogues in the Rhynchosporium Spp. Complex
20250 citationsauthor #7
Wheat infection by Fusarium graminearum species complex members is facilitated by a transcriptionally conserved non-ribosomal peptide synthetase gene cluster
20250 citationsauthor #9
Hybridization load introduced by Alpine ibex hybrid swarms
20250 citationsauthor #21
Discovery of globally rare CYP51 mutations associated with azole resistance in Iranian Zymoseptoria tritici isolates
20250 citationsauthor #7
A large European diversity panel reveals complex azole fungicide resistance gains of a major wheat pathogen
20254 citationsauthor #10
An Inversion Polymorphism Under Balancing Selection, Involving Giant Mobile Elements, in an Invasive Fungal Pathogen
20251 citationsauthor #10
Historic transposon mobilisation waves create distinct pools of adaptive variants in a major crop pathogen
20253 citationsauthor #3
High-resolution microbial network analysis defines biocontrol consortia in the wheat phyllosphere
20250 citationsauthor #4
Phylogenomic signatures of repeat-induced point mutations across the fungal kingdom
20253 citationsauthor #2
An ectomycorrhizal fungus alters developmental progression during endogenous rhythmic growth in pedunculate oak
20250 citationsauthor #8
Transposable elements create distinct genomic niches for effector evolution among Magnaporthe oryzae lineages
20252 citationsauthor #2
Rapid and In-situ Detection of Biological Agents via Near-Infrared Spectroscopy and Cloud-Powered Neural Networks
20240 citationsauthor #5
Dimensions of genome dynamics in fungal pathogens: from fundamentals to applications
20245 citationsauthor #1
Copy number variation introduced by a massive mobile element facilitates global thermal adaptation in a fungal wheat pathogen
202418 citationsauthor #4
Genomic Signatures of Domestication in a Fungus Obligately Farmed by Leafcutter Ants
20243 citationsauthor #7
Revisiting the evolution and function of NIP2 parologs in the Rhynchosporium spp. complex
20241 citationsauthor #6
High-resolution profiling of bacterial and fungal communities using pangenome-informed taxon-specific long-read amplicons
20241 citationsauthor #3
Landscape-scale endophytic community analyses in replicated grapevine stands reveal that dieback disease is not caused by specific fungal communities
20240 citationsauthor #6
Giant transposons promote strain heterogeneity in a major fungal pathogen
202412 citationsauthor #6
An old inversion polymorphism involving giant mobile elements in an invasive fungal pathogen
20240 citationsauthor #10
Diversification, loss, and virulence gains of the major effector AvrStb6 during continental spread of the wheat pathogen Zymoseptoria tritici
20242 citationsauthor #7
Quantitative pathogenicity and host adaptation in a fungal plant pathogen revealed by whole-genome sequencing
202420 citationsauthor #10
Genomic surveillance uncovers a pandemic clonal lineage of the wheat blast fungus
202355 citationsauthor #27
Combined reference-free and multi-reference based GWAS uncover cryptic variation underlying rapid adaptation in a fungal plant pathogen
20237 citationsauthor #3
Recent reactivation of a pathogenicity-associated transposable element is associated with major chromosomal rearrangements in a fungal wheat pathogen
202314 citationsauthor #4
A systematic screen for co-option of transposable elements across the fungal kingdom
20237 citationsauthor #3
A systemic approach allows to identify the pedoclimatic conditions most critical in the susceptibility of a grapevine cultivar to esca/Botryosphaeria dieback
20234 citationsauthor #6
Genome-wide expression QTL mapping reveals the highly dynamic regulatory landscape of a major wheat pathogen
20234 citationsauthor #2
Improved gene annotation of the fungal wheat pathogen Zymoseptoria tritici based on combined Iso-Seq and RNA-Seq evidence
202311 citationsauthor #20
The expression landscape and pangenome of long non-coding RNA in the fungal wheat pathogen Zymoseptoria tritici
20235 citationsauthor #3
Recent reactivation of a pathogenicity-associated transposable element triggers major chromosomal rearrangements in a fungal wheat pathogen
20233 citationsauthor #3
Two‐speed genomes of Epichloe fungal pathogens show contrasting signatures of selection between species and across populations
20232 citationsauthor #3
Virulence associations and global context of the AvrStb6 genetic diversity in Iranian populations of Zymoseptoria tritici.
20232 citationsauthor #3
A thousand-genome panel retraces the global spread and adaptation of a major fungal crop pathogen
202364 citationsauthor #26
Detection of genetically modified organisms using highly multiplexed amplicon sequencing
20234 citationsauthor #5
A pangenome-guided manually curated library of transposable elements for Zymoseptoria tritici
202310 citationsauthor #2
Recent transposable element bursts are associated with the proximity to genes in a fungal plant pathogen
202332 citationsauthor #2
A secreted protease-like protein in Zymoseptoria tritici is responsible for avirulence on Stb9 resistance gene in wheat
202324 citationsauthor #10
Population-level transposable element expression dynamics influence trait evolution in a fungal crop pathogen
202311 citationsauthor #3
A highly multiplexed assay to monitor pathogenicity, fungicide resistance and gene flow in the fungal wheat pathogen Zymoseptoria tritici
20238 citationsauthor #6
Copy number variation introduced by a massive mobile element underpins global thermal adaptation in a fungal wheat pathogen
20236 citationsauthor #4
H IGH - RESOLUTION P ROFILING OF B ACTERIAL AND F UNGAL 1 C OMMUNITIES USING P ANGENOME -I NFORMED T AXON - 2 S PECIFIC A MPLICONS AND L ONG -R EAD S EQUENCING 3
20230 citationsauthor #3
A highly multiplexed assay to monitor pathogenicity, fungicide resistance and gene flow in the fungal wheat pathogen Zymoseptoria tritici
20223 citationsauthor #6
Temporal changes in pathogen diversity in a perennial plant–pathogen–hyperparasite system
20229 citationsauthor #2
Organic acids and glucose prime late-stage fungal biotrophy in maize
202213 citationsauthor #5
Unraveling coevolutionary dynamics using ecological genomics.
202211 citationsauthor #6
Quantifying Trade-Offs in the Choice of Ribosomal Barcoding Markers for Fungal Amplicon Sequencing: a Case Study on the Grapevine Trunk Mycobiome
20223 citationsauthor #6
A thousand-genome panel retraces the global spread and climatic adaptation of a major crop pathogen
20226 citationsauthor #24
A secreted protease-like protein in Zymoseptoria tritici is responsible for avirulence 1 on Stb9 resistance gene in wheat 2
20220 citationsauthor #14
Combined reference-free and multi-reference approaches uncover cryptic variation underlying rapid adaptation in microbial pathogens
20222 citationsauthor #3
Global diversification of the common moonwort ferns (Botrychium lunaria group, Ophioglossaceae) was mainly driven by Pleistocene climatic shifts
20222 citationsauthor #4
A THOUSAND - GENOME PANEL RETRACES THE 1 GLOBAL SPREAD AND CLIMATIC ADAPTATION 2 OF A MAJOR CROP PATHOGEN 3
20220 citationsauthor #28
Chromosome-level genome assembly for the Aldabra giant tortoise enables insights into the genetic health of a threatened population
202211 citationsauthor #7
The era of reference genomes in conservation genomics.
2022228 citationsauthor #55
Divergent Outcomes of Direct Conspecific Pathogen Strain Interaction and Plant Co-Infection Suggest Consequences for Disease Dynamics
20225 citationsauthor #3
Recent transposable element bursts triggered by insertions near genes in a fungal pathogen
20222 citationsauthor #2
Genome of Malassezia arunalokei and Its Distribution on Facial Skin
202212 citationsauthor #3
Genome-wide association mapping reveals genes underlying population-level metabolome diversity in a fungal crop pathogen
20228 citationsauthor #5
Chapter 10. Omics-based Detection, Identification and Quantification of GM Food and Feed: Current Challenges and Perspectives
20210 citationsauthor #3
Cryptic genetic structure and copy‐number variation in the ubiquitous forest symbiotic fungus Cenococcum geophilum
202110 citationsauthor #11
Genetics and Molecular Biology
20214 citationsauthor #5
Genome-scale phylogenies reveal relationships among Parastagonospora species infecting domesticated and wild grasses
202112 citationsauthor #1
Correction to: Genome-wide association study for septoria tritici blotch resistance reveals the occurrence and distribution of Stb6 in a historic Swiss landrace collection
20210 citationsauthor #2
Transcriptome‐wide SNPs for Botrychium lunaria ferns enable fine‐grained analysis of ploidy and population structure
20213 citationsauthor #6
Fusarium: more than a node or a foot-shaped basal cell
2021261 citationsauthor #41
A devil's bargain with transposable elements in plant pathogens.
202142 citationsauthor #4
Screening of grapevine red blotch virus in two European ampelographic collections
202111 citationsauthor #11
Soil composition and plant genotype determine benzoxazinoid‐mediated plant–soil feedbacks in cereals
202121 citationsauthor #7
Genome-Wide Association Study Reveals Genetic Architecture of Septoria Tritici Blotch Resistance in a Historic Landrace Collection
20210 citationsauthor #2
Emergence and diversification of a highly invasive chestnut pathogen lineage across southeastern Europe
202118 citationsauthor #5
Multiplex amplicon sequencing dataset for genotyping pandemic populations of the wheat blast fungus
20214 citationsauthor #19
Variability in an effector gene promoter of a necrotrophic fungal pathogen dictates epistasis and effector-triggered susceptibility in wheat
202116 citationsauthor #6
Population genomics of transposable element activation in the highly repressive genome of an agricultural pathogen
20216 citationsauthor #4
Cryptic genetic structure and copy-number variation in the 1 ubiquitous forest symbiotic fungus
20211 citationsauthor #10
Histone H3K27 Methylation Perturbs Transcriptional Robustness and Underpins Dispensability of Highly Conserved Genes in Fungi
202111 citationsauthor #4
The population genetics of adaptation through copy-number variation in a fungal plant pathogen
202137 citationsauthor #4
Rapid sequence evolution driven by transposable elements at a virulence locus in a fungal wheat pathogen
202126 citationsauthor #4
Genome-wide association study for septoria tritici blotch resistance reveals the occurrence and distribution of Stb6 in a historic Swiss landrace collection
20215 citationsauthor #2
A new method to determine the diet of pygmy hippopotamus in Taï National Park, Côte d’Ivoire
20216 citationsauthor #7
Transposable Elements in Fungi: Coevolution With the Host Genome Shapes, Genome Architecture, Plasticity and Adaptation
20215 citationsauthor #3
The Genetic Architecture of Emerging Fungicide Resistance in Populations of a Global Wheat Pathogen
202039 citationsauthor #3
Transcriptome plasticity underlying plant root colonization and insect invasion by Pseudomonas protegens
20200 citationsauthor #5
A Chromosome-Scale Genome Assembly for the Fusarium oxysporum Strain Fo5176 To Establish a Model Arabidopsis-Fungal Pathosystem
202032 citationsauthor #7
Genome evolution in fungal plant pathogens: looking beyond the two-speed genome model
202080 citationsauthor #3
Maintenance of variation in virulence and reproduction in populations of an agricultural plant pathogen
202024 citationsauthor #2
Author response: Emergence and diversification of a highly invasive chestnut pathogen lineage across southeastern Europe
20200 citationsauthor #5
Comparative Genomics Analyses of Lifestyle Transitions at the Origin of an Invasive Fungal Pathogen in the Genus Cryphonectria
202017 citationsauthor #3
A transcriptome for the early-branching fern Botrychium lunaria enables fine-grained resolution of population structure
20200 citationsauthor #5
The complex genomic basis of rapid convergent adaptation to pesticides across continents in a fungal plant pathogen
202029 citationsauthor #6

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