J. Stegen

Building Cross-Site and Cross-Network Collaborations in Critical Zone Science
202327 citationsauthor #7
Microdiverse bacterial clades prevail across Antarctic wetlands
20234 citationsauthor #2
Metabolic multireactor: Practical considerations for using simple oxygen sensing optodes for high-throughput batch reactor metabolism experiments
20232 citationsauthor #3
A hydrogeophysical framework to assess infiltration during a simulated ecosystem-scale flooding experiment
20239 citationsauthor #12
Rethinking Aerobic Respiration in the Hyporheic Zone under Variation in Carbon and Nitrogen Stoichiometry
20239 citationsauthor #5
Ecohydrological decoupling under changing disturbances and climate
202317 citationsauthor #13
Vertical Hydrologic Exchange Flows Control Methane Emissions from Riverbed Sediments.
202343 citationsauthor #3
A functional microbiome catalog crowdsourced from North American rivers
20235 citationsauthor #27
Potential bioavailability of representative pyrogenic organic matter compounds in comparison to natural dissolved organic matter pools
20239 citationsauthor #5
Maximum respiration rates in hyporheic zone sediments are primarily constrained by organic carbon concentration and secondarily by organic matter chemistry
202312 citationsauthor #1
Riverine organic matter functional diversity increases with catchment size
20239 citationsauthor #12
Exploring the determinants of organic matter bioavailability through substrate-explicit thermodynamic modeling
202313 citationsauthor #4
Coordination and divergence in community assembly processes across co-occurring microbial groups separated by cell size
20236 citationsauthor #2
Laboratory evaluation of open source and commercial electrical conductivity sensor precision and accuracy: How do they compare?
20237 citationsauthor #2
Spatial and temporal metagenomics of river compartments reveals viral community dynamics in an urban impacted stream
20234 citationsauthor #14
Genome-Resolved Metaproteomics Decodes the Microbial and Viral Contributions to Coupled Carbon and Nitrogen Cycling in River Sediments
202230 citationsauthor #13
RNA Viruses Linked to Eukaryotic Hosts in Thawed Permafrost
202218 citationsauthor #4
Thousands of small, novel genes predicted in global phage genomes.
202240 citationsauthor #49
Comment on egusphere-2022-613
20220 citationsauthor #1
Microbial and Environmental Processes Shape the Link between Organic Matter Functional Traits and Composition.
202279 citationsauthor #4
The ecological assembly of bacterial communities in Antarctic wetlands varies across levels of phylogenetic resolution
20225 citationsauthor #5
It Takes a Village: Using a Crowdsourced Approach to Investigate Organic Matter Composition in Global Rivers Through the Lens of Ecological Theory
20228 citationsauthor #8
Inferring the Contribution of Microbial Taxa and Organic Matter Molecular Formulas to Ecological Assembly
20227 citationsauthor #9
Physical, resource supply, and biological controls on nutrient processing along the river continuum
20220 citationsauthor #5
Reviews and syntheses: Use and misuse of peak intensities from 1 high resolution mass spectrometry in organic matter studies: 2 opportunities for robust usage
20223 citationsauthor #9
Disinfection byproducts formed during drinking water treatment reveal an export control point for dissolved organic matter in a subalpine headwater stream
202219 citationsauthor #8
Organic Matter Transformations are Disconnected Between Surface Water and the Hyporheic Zone
202210 citationsauthor #1
Movement with meaning: integrating information into meta‐ecology
202220 citationsauthor #7
Multi-omics profiling of Earth’s biomes reveals patterns of diversity and co-occurrence in microbial and metabolite composition across environments
20223 citationsauthor #43
Implications of sample treatment on characterization of riverine dissolved organic matter.
20229 citationsauthor #9
Hyporheic Zone Respiration is Jointly Constrained by Organic 1 Carbon Concentration and Molecular Richness 2
20220 citationsauthor #1
Distinct and Temporally Stable Assembly Mechanisms Shape Bacterial and Fungal Communities in Vineyard Soils
202221 citationsauthor #3
Continental-scale niche differentiation of dominant topsoil archaea in drylands.
202210 citationsauthor #4
Riverbed Temperature and 4D ERT Monitoring Reveals Heterogenous Horizontal and Vertical Groundwater-Surface Water Exchange Flows Under Dynamic Stage Conditions
20222 citationsauthor #5
Potential bioavailability of pyrogenic organic matter resembles 1 natural dissolved organic matter pools 2
20221 citationsauthor #5
Contrasting Community Assembly Forces Drive Microbial Structural and Potential Functional Responses to Precipitation in an Incipient Soil System
20217 citationsauthor #4
EdgeAI: How to Use AI to Collect Reliable and Relevant Watershed Data
20212 citationsauthor #13
ORT: A workflow linking genome-scale metabolic models with reactive transport codes
20211 citationsauthor #6
Inferred molecular bioavailability of pyrogenic organic matter compared to natural organic matter from global sediments and surface waters
20211 citationsauthor #5
Reply on RC2
20210 citationsauthor #1
Inferred bioavailability of pyrogenic organic matter in comparison to natural organic matter from global sediments and surface waters
20210 citationsauthor #5
Author Correction: A genomic catalog of Earth’s microbiomes
202116 citationsauthor #222
Historical Contingency in Microbial Resilience to Hydrologic Perturbations
20212 citationsauthor #2
Emergent Concepts from a Community Ideation on AI4ESP
20210 citationsauthor #1
Integrated, Coordinated, Open, and Networked (ICON) Science to Advance the Geosciences: Introduction and Synthesis of a Special Collection of Commentary Articles
202134 citationsauthor #5
Multi-omics profiling of Earth’s biomes reveals that microbial and metabolite composition are shaped by the environment
20216 citationsauthor #43
Implications of sample treatment on characterization of the riverine environmental metabolome
20211 citationsauthor #9
Microbial Genome-Resolved Metaproteomic Analyses Frame Intertwined Carbon and Nitrogen Cycles in River Hyporheic Sediments
20213 citationsauthor #13
Coupled Biotic-Abiotic Processes Control Biogeochemical Cycling of Dissolved Organic Matter in the Columbia River Hyporheic Zone
202123 citationsauthor #4
Evaluating a Laboratory Flume Microbiome as a Window Into Natural Riverbed Biogeochemistry
20218 citationsauthor #4
Reply on RC1
20210 citationsauthor #1
Special Collection on Open Collaboration Across Geosciences
202113 citationsauthor #5
Assembly of the Populus Microbiome Is Temporally Dynamic and Determined by Selective and Stochastic Factors
202138 citationsauthor #5
Antecedent conditions determine the biogeochemical response of coastal soils to seawater exposure
202113 citationsauthor #2
Advancing river corridor science beyond disciplinary boundaries with an inductive approach to hypothesis generation
20212 citationsauthor #7
Sample Identifiers and Metadata to Support Data Management and Reuse in Multidisciplinary Ecosystem Sciences
202120 citationsauthor #22
A novel construct for scaling groundwater–river interactions based on machine-guided hydromorphic classification
20215 citationsauthor #8
Amount and reactivity of dissolved organic matter export are affected by land cover change from old‐growth to second‐growth forests in headwater ecosystems
20217 citationsauthor #7
Using metacommunity ecology to understand environmental metabolomes
2020115 citationsauthor #8
Publisher Correction: A genomic catalog of Earth’s microbiomes
20200 citationsauthor #218
Disturbance Triggers Non-Linear Microbe-Environment Feedbacks
202018 citationsauthor #10
WHONDRS-GUI: a web application for global survey of surface water metabolites
20201 citationsauthor #4
Filling the Information Gap in Meta-Ecosystem Ecology
20202 citationsauthor #7
Active layer depth and soil properties impact specific leaf area variation and ecosystem productivity in a boreal forest
202011 citationsauthor #3
Dissolved oxygen dynamics reveal biogeochemical tipping points driven by river corridor hydrology
20202 citationsauthor #16
Using Community Science to Reveal the Global Chemogeography of River Metabolomes
202041 citationsauthor #3
Ecological theory applied to environmental metabolomes reveals compositional divergence despite conserved molecular properties
202030 citationsauthor #13
Carbon limitation leads to thermodynamic regulation of aerobic metabolism
202045 citationsauthor #2
A genomic catalog of Earth’s microbiomes
2020685 citationsauthor #222
Temperature drives local contributions to beta diversity in mountain streams: Stochastic and deterministic processes
202055 citationsauthor #6
Salinity and Inundation Alter Biogeochemistry and Carbon Fluxes in Two Coastal Forests
20200 citationsauthor #9
Representing Organic Matter Thermodynamics in Biogeochemical Reactions via Substrate-Explicit Modeling
202062 citationsauthor #2
Linking molecular properties of soil organic carbon to emergent ecosystem functions in a tidally influenced landscape of the Pacific Northwest
20200 citationsauthor #9
Front cover.
20200 citationsauthor #6
Localized basal area affects soil respiration temperature sensitivity in a coastal deciduous forest
202010 citationsauthor #4
Distinct temporal diversity profiles for nitrogen cycling genes in a hyporheic microbiome
202014 citationsauthor #7
Straw chemistry links the assembly of bacterial communities to decomposition in paddy soils
202082 citationsauthor #3
Tree growth, transpiration, and water-use efficiency between shoreline and upland red maple (Acer rubrum) trees in a coastal forest
20208 citationsauthor #11
Unification of Environmental Metabolomics with Metacommunity Ecology
20202 citationsauthor #8
Front Cover
20200 citationsauthor #6
Small streams dominate US tidal reaches and will be disproportionately impacted by sea-level rise.
202011 citationsauthor #4
Methane and nitrous oxide porewater concentrations and surface fluxes of a regulated river.
202030 citationsauthor #12
Distinct assembly mechanisms underlie similar biogeographical patterns of rare and abundant bacteria in Tibetan Plateau grassland soils.
2020115 citationsauthor #3
A Flux Detection Probe to Quantify Dynamic Groundwater‐Surface Water Exchange in the Hyporheic Zone
20208 citationsauthor #5
Integrating field observations and process-based modeling to predict watershed water quality under environmental perturbations
202040 citationsauthor #8
Controls on and consequences of specific leaf area variation with permafrost depth in a boreal forest
20201 citationsauthor #3
An inductive approach to characterize physical, chemical, and biological system interactions in a 5th order river basin
20200 citationsauthor #7
Assessing Microbial Community Patterns During Incipient Soil Formation From Basalt
201917 citationsauthor #2
Tree proximity affects soil respiration dynamics in a coastal temperate deciduous forest
20191 citationsauthor #4
The Hydro-bio-geochemistry of the Columbia River and its Tributary Confluences
20190 citationsauthor #6
WHONDRS: An open community resource for studying hydro-biogeochemistry of dynamic river corridors
20190 citationsauthor #1
Accounting for hydrological and microbial processes on greenhouse gas budgets from river systems. Final report
20190 citationsauthor #6
Small ripples can result in big tides: viral impacts on carbon and nitrogen transformations in Columbia River sediments
20190 citationsauthor #11
Multi-omics Integration for Substrate-Explicit Biogeochemical Modeling and More
20190 citationsauthor #7
The Influence of Microbial Priming Effects on the Hydro-bio-geochemistry in the Columbia River and its Tributary Confluences
20190 citationsauthor #6
Community use of persistent sample identifiers and metadata standards: supporting efficient data management in the field, laboratory, and online
20191 citationsauthor #22
Open Watershed Science by Design: Leveraging Distributed Research Networks to Understand Watershed Systems: Workshop Report
20197 citationsauthor #1
Tree proximity affects soil respiration dynamics in a 1 coastal temperate deciduous forest 2 3 5
20190 citationsauthor #4
Spatial gradients in the characteristics of soil-carbon fractions are associated with abiotic features but not microbial communities
201923 citationsauthor #9
Temporal dynamics of nitrogen cycle gene diversity in a hyporheic microbiome
20192 citationsauthor #7

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