J. Thorson

Catch per unit effort modelling for stock assessment: A summary of good practices
202470 citationsauthor #6
Joint spatiotemporal models to predict seabird densities at sea
20236 citationsauthor #3
Unlocking the triad of age, year, and cohort effects for stock assessment: Demonstration of a computationally efficient and reproducible framework using weight-at-age
20233 citationsauthor #2
The performance of model-based indices given alternative sampling strategies in a climate-adaptive survey design
20235 citationsauthor #2
Spatially varying catchability for integrating research survey data with other data sources: case studies involving observer samples, industry-cooperative surveys, and predators-as-samplers
202312 citationsauthor #2
Data weighting: An iterative process linking surveys, data synthesis, and population models to evaluate mis-specification
20238 citationsauthor #1
Integrating survey and observer data improves the predictions of New Zealand spatio-temporal models
202310 citationsauthor #3
Catchment-scale stream network spatio-temporal models, applied to the freshwater stages of a diadromous fish species, longfin eel (Anguilla dieffenbachii)
20238 citationsauthor #3
A step towards the integration of spatial dynamics in population dynamics models: Eastern Bering Sea snow crab as a case study
20235 citationsauthor #3
Spatio-temporal species distribution models reveal dynamic indicators for ecosystem-based fisheries management
20233 citationsauthor #3
Estimating climate-driven phenology shifts and survey availability using fishery-dependent data
202315 citationsauthor #6
Diet analysis using generalized linear models derived from foraging processes using R package mvtweedie
20223 citationsauthor #1
Do large‐scale associations in birds imply biotic interactions or environmental filtering?
20228 citationsauthor #8
Titmice are a better indicator of bird density in Northern European than in Western European forests
20220 citationsauthor #8
Forecasting community reassembly using climate‐linked spatio‐temporal ecosystem models
202125 citationsauthor #1
Synthesis of interannual variability in spatial demographic processes supports the strong influence of cold-pool extent on eastern Bering Sea walleye pollock (Gadus chalcogrammus)
202117 citationsauthor #2
Modeling nearshore fish habitats using Alaska as a regional case study
202117 citationsauthor #3
Implementing two-dimensional autocorrelation in either survival or natural mortality improves a state-space assessment model for Southern New England-Mid Atlantic yellowtail flounder
202118 citationsauthor #4
Grand challenge for habitat science: stage-structured responses, nonlocal drivers, and mechanistic associations among habitat variables affecting fishery productivity
20218 citationsauthor #1
Incorporating vertical distribution in index standardization accounts for spatiotemporal availability to acoustic and bottom trawl gear for semi-pelagic species
202118 citationsauthor #2
Predator stomach contents can provide accurate indices of prey biomass
202118 citationsauthor #6
The Role of Climate, Oceanography, and Prey in Driving Decadal Spatio-Temporal Patterns of a Highly Mobile Top Predator
202113 citationsauthor #17
The surprising sensitivity of index scale to delta-model assumptions: Recommendations for model-based index standardization
202122 citationsauthor #1
Corrigendum to “Perspective: Let’s simplify stock assessment by replacing tuning algorithms with statistics” [Fish. Res. 219 (2019) 133–139]
20210 citationsauthor #1
Estimating spatiotemporal availability of transboundary fishes to fishery‐independent surveys
20215 citationsauthor #4
The development of spatio-temporal models of fishery catch-per-unit-effort data to derive indices of relative abundance
202033 citationsauthor #1
Comparing the performance of three data-weighting methods when allowing for time-varying selectivity
202011 citationsauthor #2
Range edges of North American marine species are tracking temperature over decades
202058 citationsauthor #5
Crystal Structure of hMAT Mutant K289L
20200 citationsauthor #6
Are we ready to track climate-driven shifts in marine species across international boundaries? - A global survey of scientific bottom trawl data
202018 citationsauthor #75
Good Practices for Species Distribution Modeling of Deep-Sea Corals and Sponges for Resource Management: Data Collection, Analysis, Validation, and Communication
202033 citationsauthor #2
Simulation testing a new multi-stage process to measure the effect of increased sampling effort on effective sample size for age and length data
20209 citationsauthor #1
Crystal structure of Apo AtmM
20201 citationsauthor #4
Comparing predictions of fisheries bycatch using multiple spatiotemporal species distribution model frameworks
202052 citationsauthor #5
Empirical orthogonal function regression: Linking population biology to spatial varying environmental conditions using climate projections
202022 citationsauthor #1
AtmM with bound rebeccamycin analogue
20201 citationsauthor #4
Historical dynamics of the demersal fish community in the East and South China Seas
20205 citationsauthor #2
The need for spatio-temporal modeling to determine catch-per-unit effort based indices of abundance and associated composition data for inclusion in stock assessment models
202052 citationsauthor #2
Adapting to climate‐driven distribution shifts using model‐based indices and age composition from multiple surveys in the walleye pollock ( Gadus chalcogrammus ) stock assessment
202032 citationsauthor #2
Seasonal and interannual variation in spatio-temporal models for index standardization and phenology studies
202023 citationsauthor #1
Are we ready to track climate‐driven shifts in marine species across international boundaries? ‐ A global survey of scientific bottom trawl data
202065 citationsauthor #75
Predicting recruitment density dependence and intrinsic growth rate for all fishes worldwide using a data‐integrated life‐history model
202096 citationsauthor #1
JABBA-Select: Incorporating life history and fisheries’ selectivity into surplus production models
202036 citationsauthor #3
Spatio‐temporal analyses of marine predator diets from data‐rich and data‐limited systems
202025 citationsauthor #2
Defining indices of ecosystem variability using biological samples of fish communities: A generalization of empirical orthogonal functions
202013 citationsauthor #1
Estimating synchronous changes in condition and density in eastern Bering Sea fishes
202026 citationsauthor #3
Understanding patterns of distribution shifts and range expansion/contraction for small yellow croaker ( Larimichthys polyactis ) in the Yellow Sea
202024 citationsauthor #5
A novel spatiotemporal stock assessment framework to better address fine‐scale species distributions: Development and simulation testing
202035 citationsauthor #2
Comparison of multiple approaches to calculate time-varying biological reference points in climate-linked population-dynamics models
202021 citationsauthor #2
Guidance for decisions using the Vector Autoregressive Spatio-Temporal (VAST) package in stock, ecosystem, habitat and climate assessments
2019232 citationsauthor #1
A new semi-parametric method for autocorrelated age- and time-varying selectivity in age-structured assessment models
201925 citationsauthor #2
Developing spatio-temporal models using multiple data types for evaluating population trends and habitat usage
201956 citationsauthor #2
Accounting for shifting distributions and changing productivity in the development of scientific advice for fishery management
201987 citationsauthor #22
Spatio-temporal dynamics of summer flounder (Paralichthys dentatus) on the Northeast US shelf
201935 citationsauthor #2
Measuring the impact of oceanographic indices on species distribution shifts: The spatially varying effect of cold‐pool extent in the eastern Bering Sea
201950 citationsauthor #1
Evaluation of the impacts of different treatments of spatio-temporal variation in catch-per-unit-effort standardization models
201967 citationsauthor #5
Corrigendum to “Guidance for decisions using the Vector Autoregressive Spatio-Temporal (VAST) package in stock, ecosystem, habitat and climate assessments” [Fish. Res. 210 (February) 2019, 143–161]
20190 citationsauthor #1
Are hedge fund returns affected by media coverage of macroeconomic news?
20191 citationsauthor #2
Understanding historical summer flounder (Paralichthys dentatus) abundance patterns through the incorporation of oceanography-dependent vital rates in Bayesian hierarchical models
201919 citationsauthor #3
Coupled changes in biomass and distribution drive trends in availability of fish stocks to US West Coast ports
201932 citationsauthor #2
Paulik revisited: Statistical framework and estimation performance of multistage recruitment functions
201914 citationsauthor #2
Overcoming long Bayesian run times in integrated fisheries stock assessments
201914 citationsauthor #3
The case for estimating recruitment variation in data-moderate and data-poor age-structured models
201915 citationsauthor #1
Correction: Eco-Label Conveys Reliable Information on Fish Stock Health to Seafood Consumers
20193 citationsauthor #21
Steepness for West Coast rockfishes: Results from a twelve-year experiment in iterative regional meta-analysis
201922 citationsauthor #1
Ensemble models for data-poor assessment: accounting for uncertainty in life-history information
201924 citationsauthor #2
The crystal structure of TerB co-crystallized with polyporic acid
20190 citationsauthor #6
Realizing the potential of trait‐based approaches to advance fisheries science
201931 citationsauthor #3
A review of methods for quantifying spatial predator–prey overlap
201966 citationsauthor #4
A novel approach to assess distribution trends from fisheries survey data
201915 citationsauthor #2
Spatiotemporal analysis of compositional data: increased precision and improved workflow using model-based inputs to stock assessment
201936 citationsauthor #1
Influence of environmental factors on capelin distributions in the Gulf of Alaska
201913 citationsauthor #3
The ocean's movescape: fisheries management in the bio‐logging decade (2018–2028)
201979 citationsauthor #3
Investigating the value of including depth during spatiotemporal index standardization
201915 citationsauthor #2
Trade‐offs in covariate selection for species distribution models: a methodological comparison
2019111 citationsauthor #2
Response to Comment on “Impacts of historical warming on marine fisheries production”
20193 citationsauthor #2
Impacts of historical warming on marine fisheries production
2019470 citationsauthor #2
Spatio-temporal models provide new insights on the biotic and abiotic drivers shaping Pacific Herring (Clupea pallasi) distribution
201921 citationsauthor #3
Modeling temporal variation in recruitment in fisheries stock assessment: A review of theory and practice
201946 citationsauthor #2
Spatio‐temporal models of intermediate complexity for ecosystem assessments: A new tool for spatial fisheries management
201932 citationsauthor #1
Design of Positive Electrodes for Li-Ion Full Cells with Silicon
201814 citationsauthor #7
The benefits and risks of incorporating climate-driven growth variation into stock assessment models, with application to Splitnose Rockfish (Sebastes diploproa)
201820 citationsauthor #2
Interannual and Secular Variability of Larvae of Mesopelagic and Forage Fishes in the Southern California Current System
201826 citationsauthor #8
Spatial heterogeneity contributes more to portfolio effects than species variability in bottom-associated marine fishes
201834 citationsauthor #1
Supplementary material from "Spatial heterogeneity contributes more to portfolio effects than species variability in bottom-associated marine fishes"
20180 citationsauthor #1
Perspective: Let’s simplify stock assessment by replacing tuning algorithms with statistics
201821 citationsauthor #1
Drivers and rates of stock assessments in the United States
201821 citationsauthor #2
Comparing models for predicting spatial effort allocation: what works well, when?
20180 citationsauthor #2
Apo Crystal Structure of TerC, a Terfestatin Biosynthesis Enzyme
20180 citationsauthor #6
Detecting mortality variation to enhance forage fish population assessments
20189 citationsauthor #2
Spatial separation of catches in highly mixed fisheries
201842 citationsauthor #2
Forecast skill for predicting distribution shifts: A retrospective experiment for marine fishes in the Eastern Bering Sea
201827 citationsauthor #1
Three problems with the conventional delta-model for biomass sampling data, and a computationally efficient alternative
201868 citationsauthor #1
Accounting for variable recruitment and fishing mortality in length-based stock assessments for data-limited fisheries
2018121 citationsauthor #2
The utility of spatial model‐based estimators of unobserved bycatch
201829 citationsauthor #3
A geostatistical state-space model of animal densities for stream networks.
201817 citationsauthor #2
Applying a New Ensemble Approach to Estimating Stock Status of Marine Fisheries around the World
201891 citationsauthor #21
Trade-offs for data-limited fisheries when using harvest strategies based on catch-only models
201821 citationsauthor #12
Vadimus : 1 Inclusion of ecological , economic , social and institutional considerations 2 when setting targets and limits for multispecies fisheries 3
20180 citationsauthor #3
Monitoring programs of the U.S. Gulf of Mexico: inventory, development and use of a large monitoring database to map fish and invertebrate spatial distributions
201828 citationsauthor #5

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