J. Burleigh

Ancient reticulation, incomplete lineage sorting and the evolution of the pyrenoid at the dawn of hornwort diversification.
20258 citationsauthor #7
Dynamic evolution of olfactory receptor genes in the Turkey Vulture and Black Vulture
20250 citationsauthor #3
All tangled up: Unraveling phylogenetics and reticulate evolution in the vining ferns, Lygodium (Schizaeales).
20249 citationsauthor #5
Microsatellite Content in 397 Nuclear Exons and Their Flanking Regions in the Fern Family Ophioglossaceae
20241 citationsauthor #6
Target Capture Methods Offer Insight into the Evolution of Rapidly Diverged Taxa and Resolve Allopolyploid Homeologs in the Fern Genus Polypodium s.s.
20239 citationsauthor #2
Comprehensive phylogenomic time tree of bryophytes reveals deep relationships and uncovers gene incongruences in the last 500 million years of diversification.
202369 citationsauthor #4
Linking ecological specialization to its macroevolutionary consequences: 1 An example with passerine nest site
20221 citationsauthor #3
An NGS-Based Phylogeny of Orthotricheae (Orthotrichaceae, Bryophyta) With the Proposal of the New Genus Rehubryum From Zealandia
202215 citationsauthor #4
Updating splits, lumps, and shuffles: Reconciling GenBank names with standardized avian taxonomies
20227 citationsauthor #5
Reconciling GenBank names with standardized avian taxonomies to improve linkage between phylogeny and phenotype
20220 citationsauthor #5
Phylogenomic assessment prompts recognition of the Serianthes clade and confirms the monophyly of Serianthes and its relationship with Falcataria and Wallaceodendron in the wider ingoid clade (Leguminosae, Caesalpinioideae)
20224 citationsauthor #3
The rapid radiation of Bomarea (Alstroemeriaceae: Liliales), driven by the rise of the Andes
20229 citationsauthor #5
A target enrichment probe set for resolving the flagellate land plant tree of life
202162 citationsauthor #24
Linking ecological specialization to its macroevolutionary consequences: An example with passerine nest type
20219 citationsauthor #3
The Evolution of Nest Site Specialization and its Macroevolutionary 1 Consequences in Passerine Birds 2 3
20211 citationsauthor #3
Community Science, Storytelling, or Inquiry-Based Learning? Evaluating Three Technology-Enhanced Pedagogical Approaches in an Online Botany Course
20216 citationsauthor #10
Benefits and Limits of Phasing Alleles for Network Inference of Allopolyploid Complexes
202116 citationsauthor #7
Pith width, leaf size, and twig thickness.
20219 citationsauthor #2
Gene-rich UV sex chromosomes harbor conserved regulators of sexual development
202173 citationsauthor #23
A Global Phylogenomic Study of the Thelypteridaceae
202127 citationsauthor #4
Whole genome phylogeny of Gallus: introgression and data-type effects
202018 citationsauthor #6
Finding Our Way Through Phenotypes
20190 citationsauthor #9
Interaction among ploidy, breeding system and lineage diversification.
201965 citationsauthor #2
Inferring punctuated evolution in the learned songs of African sunbirds
20190 citationsauthor #11
Assessing the Performance of Ks Plots for Detecting Ancient Whole Genome Duplications
201869 citationsauthor #4
Comparison of the Chinese bamboo partridge and red Junglefowl genome sequences highlights the importance of demography in genome evolution
20188 citationsauthor #5
A Natural Language Processing Pipeline to Extract Phenotypic Data from Formal Taxonomic Descriptions with a Focus on Flagellate Plants
20184 citationsauthor #2
Dispersal predicts hybrid zone widths across animal diversity: Implications for species borders under incomplete reproductive isolation
201838 citationsauthor #2
Comparison of the Chinese bamboo partridge and red Junglefowl genome sequences highlights the importance of demography in genome evolution
20180 citationsauthor #4
Extraction of phenotypic traits from taxonomic descriptions for the tree of life using natural language processing
201820 citationsauthor #3
Tempo and timing of ecological trait divergence in bird speciation
201844 citationsauthor #5
The macroecology of passerine nest types, in the light of macroevolution
20185 citationsauthor #3
chromploid: An R package for chromosome number evolution across the plant tree of life
201823 citationsauthor #3
A roadmap for global synthesis of the plant tree of life.
201833 citationsauthor #5
Testing the association of phenotypes with polyploidy: An example using herbaceous and woody eudicots
201733 citationsauthor #3
Building the “Plant Glossary”—A controlled botanical vocabulary using terms extracted from the Floras of North America and China
201712 citationsauthor #3
Evolution of the 3R-MYB Gene Family in Plants
201746 citationsauthor #2
Historical climatic variability and geographical barriers as drivers of community composition in a biodiversity hotspot
201611 citationsauthor #2
Evaluating the role of genome downsizing and size thresholds from genome size distributions in angiosperms.
201636 citationsauthor #3
Tempo and timing of ecological trait divergence in bird speciation
20165 citationsauthor #4
Supertree Methods, Phylogenetic
20160 citationsauthor #1
Phylogeny of the Rosidae: A dense taxon sampling analysis
201677 citationsauthor #5
Tempo and timing of ecological trait divergence associated with transitions to coexistence in birds
20160 citationsauthor #3
Evaluating and Characterizing Ancient Whole-Genome Duplications in Plants with Gene Count Data
201650 citationsauthor #3
Effects of 16S rDNA sampling on estimates of the number of endosymbiont lineages in sucking lice
201614 citationsauthor #3
Evolutionary Questions USING ONLINE MOLECULAR DATABASES
20160 citationsauthor #2
Assessing approaches for inferring species trees from multi-copy genes.
201518 citationsauthor #4
Constructing and Employing Tree Alignment Graphs for Phylogenetic Synthesis
20153 citationsauthor #3
Erratum to: The relationship of recombination rate, genome structure, and patterns of molecular evolution across angiosperms
20152 citationsauthor #2
Finding Our Way through Phenotypes
2015299 citationsauthor #9
MatrixConverter: Facilitating construction of phenomic character matrices1
20156 citationsauthor #4
Peeking behind the page: using natural language processing to identify and explore the characters used to classify sea anemones
20155 citationsauthor #3
MulRF: a software package for phylogenetic analysis using multi-copy gene trees
201533 citationsauthor #3
Effects of 16S rDNA sampling on estimates of endosymbiont lineages in sucking lice
20151 citationsauthor #2
Deep phylogenetic incongruence in the angiosperm clade Rosidae.
2015133 citationsauthor #7
From algae to angiosperms–inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes
2014478 citationsauthor #8
Extracting phylogenetic signals from multi-labeled gene trees and its significance for species tree construction
20140 citationsauthor #3
Perspective Finding Our Way through Phenotypes
20140 citationsauthor #9
Data access for the 1,000 Plants (1KP) project
2014505 citationsauthor #11
Synthesis of phylogeny and taxonomy into a comprehensive tree of life
2014641 citationsauthor #4
Phylotranscriptomic analysis of the origin and early diversification of land plants
20141,116 citationsauthor #9
RECURRENT EVOLUTION OF DIOECY IN BRYOPHYTES
201373 citationsauthor #3
Phylogenetic relationships and character evolution analysis of Saxifragales using a supermatrix approach.
201396 citationsauthor #8
A preliminary analysis of application of Stanford Parser and OSCAR4 for parsing and annotating microbial descriptions
20130 citationsauthor #6
Next-generation phenomics for the Tree of Life
201342 citationsauthor #1
Stability analysis of phylogenetic trees
20137 citationsauthor #4
Inferring species trees from incongruent multi-copy gene trees using the Robinson-Foulds distance
201311 citationsauthor #2
Efficient Algorithms for Knowledge-Enhanced Supertree and Supermatrix Phylogenetic Problems
201310 citationsauthor #2
Next Generation Microbial Phenomics (Poster)
20130 citationsauthor #3
Generic recircumscriptions of Oncidiinae (Orchidaceae: Cymbidieae) based on maximum likelihood analysis of combined DNA datasets
2012103 citationsauthor #6
Identifying the Phylogenetic Context of Whole-Genome Duplications in Plants
20122 citationsauthor #1
GTP Supertrees from Unrooted Gene Trees: Linear Time Algorithms for NNI Based Local Searches
201218 citationsauthor #2
A scalable method for identifying frequent subtrees in sets of large phylogenetic trees
20126 citationsauthor #3
Variation in Rates of Molecular Evolution in Plants and Implications for Estimating Divergence Times
20122 citationsauthor #1
Gene discovery from a pilot study of the transcriptomes from three diverse microbial eukaryotes: Corallomyxa tenera, Chilodonella uncinata, and Subulatomonas tetraspora
201221 citationsauthor #4
Assessing Parameter Identifiability in Phylogenetic Models Using Data Cloning
201241 citationsauthor #2
Turning the crown upside down: gene tree parsimony roots the eukaryotic tree of life.
201292 citationsauthor #7
Explaining differences in the lifespan and replicative capacity of cells: a general model and comparative analysis of vertebrates
201226 citationsauthor #4
vertebrates of cells : a general model and comparative analysis of Explaining differences in the lifespan and replicative capacity
20120 citationsauthor #4
Efficient error correction algorithms for gene tree reconciliation based on duplication, duplication and loss, and deep coalescence
201229 citationsauthor #2
Exploring Diversification and Genome Size Evolution in Extant Gymnosperms through Phylogenetic Synthesis
201273 citationsauthor #1
Inferring species trees from incongruent multi-copy gene trees using the Robinson-Foulds distance
201245 citationsauthor #2
Consensus properties for the deep coalescence problem and their application for scalable tree search
201222 citationsauthor #2
Efficient Algorithms for Knowledge-Enhanced Supertree and Supermatrix Phylogenetic Problems.
20122 citationsauthor #2
Algorithms for Knowledge-Enhanced Supertrees
20125 citationsauthor #2
Fast Local Search for Unrooted Robinson-Foulds Supertrees
201127 citationsauthor #2
Algorithms for Rapid Error Correction for the Gene Duplication Problem
20118 citationsauthor #2
An ILP solution for the gene duplication problem
201128 citationsauthor #2
Maximum likelihood models and algorithms for gene tree evolution with duplications and losses
201143 citationsauthor #2
The Deep Coalescence Consensus Tree Problem is Pareto on Clusters
20115 citationsauthor #2
Gene and Genome Duplications in Plants
201113 citationsauthor #2
Assembling the Angiosperm Tree of Life: Progress and Future Prospects
201023 citationsauthor #3
Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models
201062 citationsauthor #2
Triplet-Supertrees constructed from Minimum Triplet Presentations
20100 citationsauthor #2
Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots
2010649 citationsauthor #4
Scaling the Gene Duplication Problem Towards the Tree of Life
201011 citationsauthor #2
Inferring species trees from gene duplication episodes
201013 citationsauthor #1
Robinson-Foulds Supertrees
2010106 citationsauthor #2
Surviving the K-T mass extinction: New perspectives of polyploidization in angiosperms
200959 citationsauthor #2
Triplet supertree heuristics for the tree of life
200951 citationsauthor #2

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